Wall clock time and date at job start Tue Mar 31 2020 19:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99858 * 2 1 4 4 C 1.53007 * 109.47210 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46749 * 64.99707 * 4 3 2 6 6 C 1.46505 * 120.00149 * 270.00002 * 5 4 3 7 7 C 1.50702 * 109.46836 * 270.00364 * 6 5 4 8 8 H 1.07994 * 120.00445 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99368 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00175 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99773 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46664 * 60.00603 * 11 9 7 13 13 H 1.48500 * 109.47160 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47130 * 300.00431 * 11 9 7 15 15 C 1.34777 * 119.99736 * 90.00407 * 5 4 3 16 16 O 1.21282 * 119.99620 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00369 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 5 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 15 20 20 C 1.35912 * 117.00151 * 180.02562 * 19 18 17 21 21 C 1.38896 * 119.96904 * 359.71802 * 20 19 18 22 22 C 1.38290 * 120.28957 * 179.76866 * 21 20 19 23 23 C 1.37933 * 120.23791 * 0.51098 * 22 21 20 24 24 C 1.39831 * 119.93687 * 359.74749 * 23 22 21 25 25 C 1.47186 * 120.14631 * 180.02562 * 24 23 22 26 26 O 1.21252 * 119.99690 * 179.97438 * 25 24 23 27 27 C 1.38379 * 119.97072 * 180.02562 * 20 19 18 28 28 H 1.09001 * 109.47373 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47479 * 300.00489 * 1 2 3 30 30 H 1.09006 * 109.46787 * 60.00617 * 1 2 3 31 31 H 1.09003 * 109.47687 * 59.99592 * 3 2 1 32 32 H 1.09005 * 109.47292 * 299.99388 * 3 2 1 33 33 H 1.09003 * 109.46871 * 305.00060 * 4 3 2 34 34 H 1.08994 * 109.47270 * 184.99538 * 4 3 2 35 35 H 1.08998 * 109.46420 * 30.00391 * 6 5 4 36 36 H 1.08995 * 109.46904 * 150.00397 * 6 5 4 37 37 H 0.97004 * 119.99914 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47120 * 59.99760 * 17 15 5 39 39 H 1.08998 * 109.46862 * 300.00562 * 17 15 5 40 40 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 41 41 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 42 42 H 1.07998 * 119.85124 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.87745 * 180.25834 * 22 21 20 44 44 H 1.07996 * 120.02781 * 179.76315 * 23 22 21 45 45 H 1.08000 * 119.99738 * 359.97438 * 25 24 23 46 46 H 1.08006 * 120.11752 * 359.94747 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3403 7 6 5.5017 -1.2981 -0.9411 8 1 6.2200 -0.5462 -0.6496 9 6 5.8610 -2.6293 -0.9472 10 7 4.9861 -3.5449 -1.3017 11 14 7.5910 -3.1320 -0.4531 12 1 7.8537 -2.6957 0.9418 13 1 7.7223 -4.6084 -0.5436 14 1 8.5721 -2.4913 -1.3653 15 6 4.2633 1.3329 -2.3200 16 8 4.6290 0.8190 -3.3559 17 6 4.1295 2.8311 -2.2283 18 6 4.5119 3.4604 -3.5694 19 8 4.3856 4.8811 -3.4822 20 6 4.6893 5.5972 -4.5968 21 6 5.1064 4.9435 -5.7491 22 6 5.4126 5.6652 -6.8884 23 6 5.3162 7.0411 -6.8858 24 6 4.9024 7.7095 -5.7294 25 6 4.7974 9.1776 -5.7218 26 8 4.4379 9.7544 -4.7177 27 6 4.5889 6.9772 -4.5805 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0901 35 1 3.3857 -1.3631 -0.6713 36 1 3.9139 -1.2123 -2.3644 37 1 5.2388 -4.4815 -1.3055 38 1 4.7909 3.2078 -1.4480 39 1 3.0986 3.0896 -1.9867 40 1 3.8502 3.0836 -4.3494 41 1 5.5428 3.2018 -3.8113 42 1 5.1880 3.8666 -5.7567 43 1 5.7323 5.1498 -7.7820 44 1 5.5598 7.6016 -7.7762 45 1 5.0406 9.7410 -6.6105 46 1 4.2686 7.4867 -3.6836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749305625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:21 Heat of formation + Delta-G solvation = -148.757311 kcal Electronic energy + Delta-G solvation = -28102.216918 eV Core-core repulsion = 23957.019832 eV Total energy + Delta-G solvation = -4145.197086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41551 -40.80992 -39.93577 -38.77512 -38.11545 -36.57771 -34.84689 -33.28738 -32.26253 -31.18374 -30.75868 -29.01534 -27.09881 -26.49612 -25.51486 -24.23989 -23.62718 -23.35942 -21.61784 -20.06038 -19.25251 -18.63488 -18.09465 -17.58108 -17.41409 -17.27954 -17.11929 -16.82169 -16.56542 -16.32794 -16.09492 -15.97332 -15.79815 -15.48869 -15.24648 -14.71461 -14.46637 -14.44653 -14.27275 -13.87430 -13.60963 -13.38883 -13.08617 -13.01897 -12.96132 -12.79705 -12.73545 -12.66247 -12.51610 -12.17876 -12.00676 -11.92908 -11.79850 -11.69831 -10.83749 -10.72088 -10.61958 -10.52701 -10.08797 -9.45048 -9.29898 -8.19173 -6.33948 -0.39212 0.39681 1.36512 1.40873 1.47981 1.49371 1.73710 1.78489 2.36684 2.57031 2.79915 2.97491 3.10531 3.35611 3.55050 3.76027 3.85433 3.87941 4.03313 4.10539 4.15884 4.21440 4.24469 4.37768 4.40012 4.43053 4.52510 4.53397 4.60995 4.65015 4.69447 4.76408 4.86038 4.90004 4.96496 5.19072 5.23112 5.27422 5.29282 5.38789 5.57353 5.67667 5.85744 6.09793 6.28262 6.34068 6.48545 6.71823 6.79295 7.27698 7.43046 8.87874 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.002463 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.634599 B =11365.409340 C =12918.941672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.043 3.957 4 C 0.102 3.898 5 N -0.592 5.592 6 C 0.271 3.729 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.276 1.276 15 C 0.501 3.499 16 O -0.596 6.596 17 C -0.125 4.125 18 C 0.084 3.916 19 O -0.323 6.323 20 C 0.097 3.903 21 C -0.188 4.188 22 C -0.096 4.096 23 C -0.089 4.089 24 C -0.168 4.168 25 C 0.395 3.605 26 O -0.505 6.505 27 C -0.116 4.116 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.028 0.972 36 H -0.010 1.010 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.158 0.842 44 H 0.180 0.820 45 H 0.168 0.832 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 23.503 -6.764 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.034 4.034 4 C -0.020 4.020 5 N -0.322 5.322 6 C 0.150 3.850 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.193 4.193 10 N -0.568 5.568 11 Si 0.791 3.209 12 H -0.185 1.185 13 H -0.205 1.205 14 H -0.202 1.202 15 C 0.290 3.710 16 O -0.478 6.478 17 C -0.165 4.165 18 C 0.008 3.992 19 O -0.237 6.237 20 C 0.052 3.948 21 C -0.207 4.207 22 C -0.114 4.114 23 C -0.107 4.107 24 C -0.169 4.169 25 C 0.256 3.744 26 O -0.381 6.381 27 C -0.135 4.135 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.046 0.954 36 H 0.008 0.992 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.175 0.825 44 H 0.197 0.803 45 H 0.184 0.816 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.958 23.229 -6.554 24.459 hybrid contribution 0.497 -1.341 0.192 1.443 sum -3.461 21.889 -6.362 23.056 Atomic orbital electron populations 1.22849 0.80083 1.03041 1.00809 1.88044 1.21106 1.29018 1.95529 1.23205 0.93438 0.84818 1.01937 1.21943 0.93262 1.00416 0.86425 1.48117 1.63972 1.08008 1.12078 1.18659 0.95554 0.75585 0.95195 1.21725 0.98281 0.92626 1.45560 0.92739 1.25874 1.01840 0.96435 0.95157 1.70073 1.36606 1.01401 1.48747 0.85481 0.79084 0.77123 0.79182 1.18537 1.20467 1.20173 1.20874 0.77103 0.89894 0.83142 1.90652 1.49266 1.76514 1.31388 1.21469 1.06761 0.89319 0.98902 1.22303 1.01756 0.77024 0.98074 1.85950 1.83650 1.19745 1.34394 1.19115 0.97569 0.91650 0.86500 1.21831 1.03473 1.01394 0.94007 1.21356 0.97546 0.94711 0.97778 1.21739 0.96874 0.94144 0.97983 1.21111 1.03930 0.97614 0.94275 1.24862 0.70047 0.87416 0.92031 1.90540 1.35758 1.73181 1.38587 1.20762 1.02168 0.90502 1.00058 0.90159 0.91960 0.93778 0.88967 0.92728 0.90387 0.85548 0.95370 0.99213 0.92541 0.85704 0.85730 0.91757 0.92026 0.85333 0.82458 0.80281 0.81623 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.42 -14.12 9.53 -148.98 -1.42 -15.54 16 3 C 0.04 1.11 6.28 71.98 0.45 1.56 16 4 C 0.10 3.09 5.62 86.38 0.49 3.57 16 5 N -0.59 -25.05 2.42 -826.13 -2.00 -27.05 16 6 C 0.27 15.05 4.98 85.63 0.43 15.48 16 7 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.34 5.46 84.65 0.46 0.80 16 10 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 11 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 C 0.50 20.27 7.67 87.66 0.67 20.94 16 16 O -0.60 -30.17 15.56 -3.04 -0.05 -30.21 16 17 C -0.13 -3.37 4.62 29.85 0.14 -3.23 16 18 C 0.08 2.33 4.03 71.98 0.29 2.62 16 19 O -0.32 -8.54 10.13 -92.56 -0.94 -9.48 16 20 C 0.10 2.35 6.68 22.46 0.15 2.50 16 21 C -0.19 -4.03 9.04 22.44 0.20 -3.83 16 22 C -0.10 -1.40 10.02 22.21 0.22 -1.18 16 23 C -0.09 -0.96 9.79 22.58 0.22 -0.74 16 24 C -0.17 -2.63 5.87 -20.16 -0.12 -2.75 16 25 C 0.40 4.91 11.46 70.17 0.80 5.71 16 26 O -0.51 -11.32 17.16 -2.94 -0.05 -11.37 16 27 C -0.12 -2.58 9.54 22.68 0.22 -2.37 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.29 7.30 -2.38 -0.02 1.27 16 33 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 34 H 0.13 2.68 6.44 -2.39 -0.02 2.66 16 35 H 0.03 1.65 7.11 -2.39 -0.02 1.63 16 36 H -0.01 -0.66 7.42 -2.39 -0.02 -0.68 16 37 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.12 2.78 7.40 -2.39 -0.02 2.76 16 39 H 0.12 2.67 7.26 -2.39 -0.02 2.66 16 40 H 0.06 1.85 7.62 -2.39 -0.02 1.84 16 41 H 0.06 1.84 7.60 -2.39 -0.02 1.82 16 42 H 0.13 2.93 6.28 -2.91 -0.02 2.91 16 43 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 44 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 45 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 46 H 0.13 3.04 7.65 -2.91 -0.02 3.01 16 Total: -1.00 -86.21 393.41 4.95 -81.26 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.98 Total: 12.68 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.11 Total: 9.43 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.71 Total: -84.37 kcal Atomic # 8 Polarization: -64.14 SS G_CDS: -2.45 Total: -66.59 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -86.21 4.95 -81.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749305625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.497 kcal (2) G-P(sol) polarization free energy of solvation -86.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds