Wall clock time and date at job start Tue Mar 31 2020 19:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42903 * 114.00199 * 2 1 4 4 C 1.53000 * 109.47352 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46992 * 65.00417 * 4 3 2 6 6 C 1.46497 * 119.99904 * 279.28815 * 5 4 3 7 7 C 1.53001 * 109.46793 * 270.00088 * 6 5 4 8 8 C 1.50708 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.20829 * 119.99489 * 0.02562 * 8 7 6 10 10 O 1.34226 * 120.00001 * 180.02562 * 8 7 6 11 11 C 1.45206 * 116.99758 * 180.02562 * 10 8 7 12 12 C 1.34778 * 119.99907 * 99.28788 * 5 4 3 13 13 O 1.21591 * 119.99989 * 186.48046 * 12 5 4 14 14 C 1.47646 * 120.00232 * 6.48257 * 12 5 4 15 15 C 1.40009 * 119.89790 * 149.56094 * 14 12 5 16 16 C 1.36313 * 120.10735 * 180.25500 * 15 14 12 17 17 C 1.40884 * 119.89202 * 359.51942 * 16 15 14 18 18 C 1.41112 * 120.10653 * 180.23246 * 17 16 15 19 19 H 1.08000 * 119.99961 * 209.59616 * 18 17 16 20 20 C 1.40225 * 119.99824 * 29.59736 * 18 17 16 21 21 N 1.30644 * 119.99816 * 10.62076 * 20 18 17 22 22 Si 1.86801 * 119.99947 * 190.62469 * 20 18 17 23 23 H 1.48494 * 109.47061 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46913 * 119.99954 * 22 20 18 25 25 H 1.48500 * 109.47057 * 239.99499 * 22 20 18 26 26 C 1.40893 * 119.79301 * 0.50264 * 17 16 15 27 27 C 1.36316 * 119.88819 * 359.72737 * 26 17 16 28 28 H 1.09000 * 109.47722 * 59.99787 * 1 2 3 29 29 H 1.09005 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47631 * 299.99432 * 1 2 3 31 31 H 1.09000 * 109.46515 * 60.00030 * 3 2 1 32 32 H 1.08997 * 109.47187 * 300.00705 * 3 2 1 33 33 H 1.09001 * 109.47145 * 305.00111 * 4 3 2 34 34 H 1.08999 * 109.46563 * 185.00209 * 4 3 2 35 35 H 1.08997 * 109.47485 * 29.99787 * 6 5 4 36 36 H 1.08997 * 109.47299 * 150.00139 * 6 5 4 37 37 H 1.09000 * 109.47494 * 299.99411 * 7 6 5 38 38 H 1.08998 * 109.47285 * 60.00502 * 7 6 5 39 39 H 1.08997 * 109.47095 * 180.02562 * 11 10 8 40 40 H 1.09001 * 109.46533 * 299.99647 * 11 10 8 41 41 H 1.08998 * 109.47176 * 60.00011 * 11 10 8 42 42 H 1.08006 * 119.94528 * 359.97438 * 15 14 12 43 43 H 1.07999 * 120.05545 * 179.72648 * 16 15 14 44 44 H 0.97008 * 119.99961 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.05502 * 179.70868 * 26 17 16 46 46 H 1.08002 * 119.94236 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 3.9115 -0.8904 -1.4117 7 6 5.2266 -1.5134 -0.9391 8 6 5.1610 -3.0100 -1.1032 9 8 4.1647 -3.5254 -1.5525 10 8 6.2093 -3.7705 -0.7502 11 6 6.0758 -5.2043 -0.9365 12 6 4.4395 1.3325 -2.2585 13 8 4.6936 0.8330 -3.3375 14 6 4.6391 2.7805 -2.0500 15 6 5.6444 3.4548 -2.7536 16 6 5.8358 4.7906 -2.5605 17 6 5.0135 5.4947 -1.6590 18 6 5.2045 6.8785 -1.4594 19 1 4.9623 7.3251 -0.5063 20 6 5.7086 7.6737 -2.4985 21 7 5.8062 7.1854 -3.7063 22 14 6.2408 9.4312 -2.1557 23 1 6.0303 9.7407 -0.7187 24 1 7.6792 9.5871 -2.4906 25 1 5.4356 10.3630 -2.9855 26 6 4.0034 4.8117 -0.9529 27 6 3.8227 3.4749 -1.1491 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9784 2.1765 0.0890 35 1 3.0881 -1.2850 -0.8165 36 1 3.7505 -1.1345 -2.4617 37 1 6.0502 -1.1188 -1.5343 38 1 5.3876 -1.2694 0.1109 39 1 6.9911 -5.6996 -0.6122 40 1 5.2361 -5.5708 -0.3460 41 1 5.9000 -5.4190 -1.9905 42 1 6.2722 2.9148 -3.4469 43 1 6.6144 5.3090 -3.1004 44 1 6.1546 7.7356 -4.4252 45 1 3.3737 5.3463 -0.2573 46 1 3.0490 2.9504 -0.6081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759104292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:07 Heat of formation + Delta-G solvation = -139.151094 kcal Electronic energy + Delta-G solvation = -29014.658990 eV Core-core repulsion = 24869.878460 eV Total energy + Delta-G solvation = -4144.780529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71557 -41.20113 -39.02053 -38.80393 -37.68325 -36.70360 -35.68905 -33.61351 -31.88270 -31.28890 -30.46798 -28.76535 -27.67763 -27.19102 -25.35715 -24.16086 -23.13832 -22.78874 -21.79334 -20.29083 -19.45836 -18.80232 -18.27935 -17.80185 -17.60754 -17.55371 -17.09788 -16.80703 -16.68281 -16.13454 -15.79688 -15.48504 -15.31907 -15.14000 -14.81761 -14.44954 -14.27596 -14.19437 -13.86997 -13.74934 -13.52252 -13.30857 -13.11901 -13.01266 -12.85186 -12.83227 -12.77932 -12.43127 -12.29856 -12.25526 -11.92605 -11.80397 -11.66519 -11.62694 -11.21467 -11.16804 -10.63779 -10.57581 -9.76486 -9.48344 -9.30208 -8.69476 -6.46028 0.48766 1.09789 1.12947 1.40345 1.42761 1.55055 1.56675 2.05390 2.19056 2.24450 2.76279 2.84366 3.65443 3.68389 3.77426 3.99332 4.08946 4.11549 4.22405 4.29496 4.32181 4.36472 4.41333 4.43397 4.45700 4.57021 4.60553 4.62256 4.69600 4.76081 4.87937 4.95931 4.99600 5.01528 5.06197 5.21034 5.28614 5.32042 5.59525 5.63045 5.78468 5.98003 6.04293 6.19530 6.25704 6.50811 6.60756 6.65104 6.82221 6.92569 7.32778 8.25010 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.002715 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.783543 B =10310.537600 C =11562.439781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.036 3.964 4 C 0.075 3.925 5 N -0.599 5.599 6 C 0.137 3.863 7 C -0.124 4.124 8 C 0.473 3.527 9 O -0.535 6.535 10 O -0.364 6.364 11 C 0.027 3.973 12 C 0.570 3.430 13 O -0.601 6.601 14 C -0.279 4.279 15 C -0.054 4.054 16 C -0.192 4.192 17 C 0.100 3.900 18 C -0.475 4.475 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.818 5.818 22 Si 0.989 3.011 23 H -0.250 1.250 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.235 4.235 27 C -0.069 4.069 28 H 0.035 0.965 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.291 0.709 45 H 0.121 0.879 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 -12.809 11.780 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.041 4.041 4 C -0.046 4.046 5 N -0.330 5.330 6 C 0.014 3.986 7 C -0.163 4.163 8 C 0.317 3.683 9 O -0.425 6.425 10 O -0.281 6.281 11 C -0.066 4.066 12 C 0.365 3.635 13 O -0.484 6.484 14 C -0.283 4.283 15 C -0.073 4.073 16 C -0.211 4.211 17 C 0.097 3.903 18 C -0.503 4.503 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.442 5.442 22 Si 0.809 3.191 23 H -0.173 1.173 24 H -0.192 1.192 25 H -0.193 1.193 26 C -0.254 4.254 27 C -0.087 4.087 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.139 0.861 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.551 -13.388 10.865 17.604 hybrid contribution 0.070 0.741 -0.834 1.118 sum -3.481 -12.646 10.031 16.513 Atomic orbital electron populations 1.22881 0.79982 1.03501 1.00627 1.87835 1.21018 1.27837 1.95551 1.23174 0.93817 0.85378 1.01714 1.22755 0.92955 1.02895 0.86036 1.47637 1.63909 1.05996 1.15463 1.21065 0.96365 0.79041 1.02160 1.21753 1.01316 0.86384 1.06831 1.23740 0.80371 0.91096 0.73076 1.90662 1.33434 1.75709 1.42696 1.86510 1.41885 1.22406 1.77256 1.23570 1.05327 0.75216 1.02465 1.18676 0.74905 0.87083 0.82830 1.90647 1.54757 1.76166 1.26872 1.19116 1.07416 0.92024 1.09751 1.20490 0.96472 0.94315 0.96043 1.20961 1.02603 0.92666 1.04913 1.18168 0.88680 0.93812 0.89599 1.20127 1.37205 0.93110 0.99869 0.88970 1.26976 0.92245 1.05708 0.93781 1.69802 1.32362 1.40159 1.01922 0.85043 0.78524 0.75338 0.80182 1.17282 1.19203 1.19310 1.21044 1.01684 0.94883 1.07822 1.21525 0.98022 0.94233 0.94935 0.94604 0.88842 0.92246 0.88873 0.93973 0.87457 0.85036 0.87569 0.92571 0.88207 0.84609 0.84921 0.91507 0.92328 0.89328 0.87924 0.89793 0.86128 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -9.35 8.73 -148.98 -1.30 -10.65 16 3 C 0.04 0.80 5.08 71.98 0.37 1.17 16 4 C 0.08 1.81 5.35 86.38 0.46 2.27 16 5 N -0.60 -19.04 2.48 -825.45 -2.05 -21.09 16 6 C 0.14 4.08 4.58 86.38 0.40 4.48 16 7 C -0.12 -3.07 6.14 29.85 0.18 -2.88 16 8 C 0.47 12.31 7.96 71.24 0.57 12.88 16 9 O -0.54 -16.74 15.73 21.95 0.35 -16.40 16 10 O -0.36 -8.09 10.57 -51.38 -0.54 -8.64 16 11 C 0.03 0.42 10.56 113.37 1.20 1.62 16 12 C 0.57 23.79 7.44 86.73 0.65 24.43 16 13 O -0.60 -29.54 16.25 -4.00 -0.07 -29.61 16 14 C -0.28 -12.24 5.60 -19.93 -0.11 -12.35 16 15 C -0.05 -2.64 9.52 22.25 0.21 -2.43 16 16 C -0.19 -9.94 8.59 22.47 0.19 -9.75 16 17 C 0.10 5.01 5.54 -21.28 -0.12 4.90 16 18 C -0.47 -23.25 9.05 23.46 0.21 -23.04 16 19 H 0.09 4.19 7.87 -2.91 -0.02 4.17 16 20 C 0.03 1.38 5.25 85.35 0.45 1.83 16 21 N -0.82 -41.18 10.87 21.87 0.24 -40.94 16 22 Si 0.99 35.33 29.57 68.60 2.03 37.36 16 23 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 24 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 25 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 26 C -0.24 -10.04 9.73 22.47 0.22 -9.82 16 27 C -0.07 -2.67 7.39 22.25 0.16 -2.50 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.09 7.27 -2.39 -0.02 1.07 16 33 H 0.11 1.97 8.13 -2.39 -0.02 1.95 16 34 H 0.13 3.43 3.98 -2.73 -0.01 3.42 16 35 H 0.11 2.98 6.26 -2.39 -0.01 2.96 16 36 H 0.06 2.05 7.30 -2.39 -0.02 2.03 16 37 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 41 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 42 H 0.09 4.38 7.92 -2.91 -0.02 4.35 16 43 H 0.10 5.60 6.27 -2.91 -0.02 5.58 16 44 H 0.29 13.27 8.29 -92.70 -0.77 12.50 16 45 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 46 H 0.16 4.69 2.71 -2.91 -0.01 4.68 16 Total: -1.00 -68.65 381.63 5.94 -62.71 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 1.00 Total: 34.75 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 6.28 Total: -7.49 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -1.81 Total: -62.04 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -1.56 Total: -65.29 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -68.65 5.94 -62.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759104292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.440 kcal (2) G-P(sol) polarization free energy of solvation -68.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds