Wall clock time and date at job start Tue Mar 31 2020 19:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99927 * 2 1 4 4 C 1.53003 * 109.47433 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.44795 * 299.97244 * 4 3 2 6 6 C 1.53031 * 109.46343 * 179.97438 * 4 3 2 7 7 C 1.53198 * 109.31351 * 178.61587 * 6 4 3 8 8 N 1.46917 * 108.77365 * 54.63864 * 7 6 4 9 9 C 1.34775 * 120.63175 * 126.37456 * 8 7 6 10 10 O 1.21591 * 120.00248 * 354.16413 * 9 8 7 11 11 C 1.47533 * 119.99900 * 174.17118 * 9 8 7 12 12 C 1.39664 * 120.20026 * 306.19011 * 11 9 8 13 13 C 1.37824 * 119.92447 * 180.02562 * 12 11 9 14 14 C 1.38577 * 120.32246 * 359.97438 * 13 12 11 15 15 C 1.38022 * 120.39888 * 0.03174 * 14 13 12 16 16 C 1.38839 * 120.07659 * 359.66923 * 15 14 13 17 17 O 1.35513 * 120.16544 * 180.29984 * 16 15 14 18 18 C 1.34816 * 116.99907 * 5.43598 * 17 16 15 19 19 H 1.07996 * 120.00337 * 354.95471 * 18 17 16 20 20 C 1.38704 * 119.99915 * 174.95312 * 18 17 16 21 21 N 1.31519 * 119.99743 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47047 * 60.00269 * 22 20 18 24 24 H 1.48500 * 109.47277 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47358 * 300.00309 * 22 20 18 26 26 C 1.46934 * 118.74007 * 306.38731 * 8 7 6 27 27 C 1.53040 * 109.45675 * 59.93204 * 4 3 2 28 28 H 1.09001 * 109.46788 * 299.99255 * 1 2 3 29 29 H 1.08999 * 109.47578 * 59.99953 * 1 2 3 30 30 H 1.09005 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47297 * 60.00231 * 3 2 1 32 32 H 1.09005 * 109.47640 * 300.00286 * 3 2 1 33 33 H 0.96699 * 114.00620 * 60.02512 * 5 4 3 34 34 H 1.09001 * 109.49734 * 58.66660 * 6 4 3 35 35 H 1.09000 * 109.50093 * 298.56908 * 6 4 3 36 36 H 1.09003 * 109.58413 * 174.42787 * 7 6 4 37 37 H 1.09004 * 109.58230 * 294.84612 * 7 6 4 38 38 H 1.08006 * 120.03969 * 0.02562 * 12 11 9 39 39 H 1.07999 * 119.83961 * 179.97438 * 13 12 11 40 40 H 1.07998 * 119.80005 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.96462 * 179.97438 * 15 14 13 42 42 H 0.97005 * 119.99645 * 180.02562 * 21 20 18 43 43 H 1.08994 * 109.58697 * 293.82888 * 26 8 7 44 44 H 1.08998 * 109.58692 * 173.40025 * 26 8 7 45 45 H 1.08997 * 109.49984 * 301.34111 * 27 4 3 46 46 H 1.09007 * 109.50030 * 61.43858 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9571 0.4759 1.1663 6 6 4.1576 2.5828 -0.0013 7 6 5.6841 2.4581 0.0330 8 7 6.1141 1.6059 -1.0838 9 6 7.0443 2.0375 -1.9584 10 8 7.4586 3.1787 -1.8915 11 6 7.5597 1.1254 -2.9971 12 6 8.0859 -0.1185 -2.6415 13 6 8.5663 -0.9660 -3.6164 14 6 8.5298 -0.5905 -4.9498 15 6 8.0129 0.6356 -5.3162 16 6 7.5187 1.4997 -4.3483 17 8 7.0052 2.7015 -4.7066 18 6 6.8992 2.9527 -6.0269 19 1 7.2912 2.2469 -6.7441 20 6 6.2866 4.1178 -6.4642 21 7 5.8087 4.9771 -5.5908 22 14 6.1403 4.4662 -8.2935 23 1 5.3575 3.3839 -8.9425 24 1 5.4513 5.7659 -8.4964 25 1 7.4962 4.5259 -8.8961 26 6 5.5106 0.2742 -1.2294 27 6 3.9861 0.4240 -1.2498 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.6001 -0.4203 1.2326 34 1 3.8177 3.1327 0.8764 35 1 3.8562 3.1148 -0.9037 36 1 6.1337 3.4461 -0.0670 37 1 5.9928 2.0077 0.9764 38 1 8.1162 -0.4161 -1.6036 39 1 8.9733 -1.9274 -3.3398 40 1 8.9082 -1.2614 -5.7069 41 1 7.9882 0.9213 -6.3575 42 1 5.3799 5.7917 -5.8967 43 1 5.8051 -0.3543 -0.3890 44 1 5.8457 -0.1789 -2.1623 45 1 3.5240 -0.5632 -1.2611 46 1 3.6863 0.9766 -2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759970819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:40 Heat of formation + Delta-G solvation = -150.316855 kcal Electronic energy + Delta-G solvation = -30156.154775 eV Core-core repulsion = 26010.890062 eV Total energy + Delta-G solvation = -4145.264713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69824 -40.64380 -39.59701 -38.11061 -38.03710 -36.27195 -34.35175 -33.43138 -32.36717 -31.59488 -30.62389 -29.10697 -27.44392 -26.97989 -25.09121 -24.51746 -23.52141 -23.08150 -21.66002 -20.41417 -19.89957 -18.92056 -18.06037 -17.69940 -17.43380 -17.09608 -16.81996 -16.57295 -16.39404 -15.99218 -15.84973 -15.66552 -15.47430 -15.23117 -15.15288 -14.65124 -14.51748 -14.32593 -14.23956 -13.89228 -13.58289 -13.44695 -13.07179 -13.00112 -12.80230 -12.71422 -12.49330 -12.41253 -12.36714 -12.26647 -12.18111 -12.16059 -11.54460 -11.46153 -10.90402 -10.83799 -10.71442 -10.67999 -9.79949 -9.59532 -9.05868 -8.48543 -6.18937 0.25163 0.70236 1.31645 1.44038 1.49125 1.74739 2.11566 2.14800 2.65676 2.80936 3.14218 3.19775 3.40672 3.56970 3.68205 3.79929 3.93182 4.03397 4.11583 4.24394 4.27745 4.30514 4.33541 4.47765 4.52690 4.55811 4.57727 4.61057 4.63468 4.70573 4.78476 4.80917 4.85621 4.91385 4.97209 5.04292 5.07717 5.13630 5.24558 5.50733 5.57122 5.66432 5.69725 5.94684 6.09198 6.15755 6.42215 6.86084 6.92902 7.26384 7.74920 8.73246 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003937 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.299320 B = 7110.954345 C = 8266.296737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.041 3.959 4 C 0.154 3.846 5 O -0.553 6.553 6 C -0.118 4.118 7 C 0.120 3.880 8 N -0.606 5.606 9 C 0.567 3.433 10 O -0.587 6.587 11 C -0.229 4.229 12 C -0.036 4.036 13 C -0.190 4.190 14 C -0.046 4.046 15 C -0.249 4.249 16 C 0.146 3.854 17 O -0.214 6.214 18 C -0.422 4.422 19 H 0.108 0.892 20 C -0.022 4.022 21 N -0.915 5.915 22 Si 1.021 2.979 23 H -0.251 1.251 24 H -0.274 1.274 25 H -0.256 1.256 26 C 0.114 3.886 27 C -0.152 4.152 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.393 0.607 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.125 0.875 42 H 0.271 0.729 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 -15.902 10.331 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.037 4.037 4 C 0.113 3.887 5 O -0.361 6.361 6 C -0.157 4.157 7 C -0.002 4.002 8 N -0.339 5.339 9 C 0.357 3.643 10 O -0.467 6.467 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.208 4.208 14 C -0.064 4.064 15 C -0.269 4.269 16 C 0.093 3.907 17 O -0.118 6.118 18 C -0.497 4.497 19 H 0.125 0.875 20 C -0.220 4.220 21 N -0.551 5.551 22 Si 0.840 3.160 23 H -0.175 1.175 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.008 4.008 27 C -0.191 4.191 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.243 0.757 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.167 0.833 39 H 0.182 0.818 40 H 0.173 0.827 41 H 0.143 0.857 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.125 0.875 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.461 -14.515 10.636 19.480 hybrid contribution -0.698 0.835 -1.131 1.569 sum -8.160 -13.680 9.505 18.549 Atomic orbital electron populations 1.22925 0.79377 1.04045 1.00560 1.87731 1.21453 1.27247 1.95555 1.23184 0.93598 0.85560 1.01311 1.20857 0.90483 0.91829 0.85516 1.86455 1.74824 1.32490 1.42307 1.21825 0.95061 0.95459 1.03307 1.21454 0.94376 0.95226 0.89166 1.48048 1.39685 1.18403 1.27781 1.18600 0.78895 0.86141 0.80627 1.90723 1.61439 1.21352 1.73187 1.19091 1.15238 0.98833 0.90186 1.21152 0.94040 0.89370 1.00869 1.21151 1.06100 1.01759 0.91828 1.21403 0.93638 0.93673 0.97666 1.21293 1.08811 0.97441 0.99311 1.19895 0.91718 0.85721 0.93396 1.84004 1.71278 1.29130 1.27400 1.21924 1.40287 1.07671 0.79849 0.87512 1.26714 0.94975 0.94298 1.06020 1.70255 1.37061 1.10727 1.37081 0.84626 0.79625 0.78432 0.73352 1.17543 1.19821 1.18060 1.21891 0.92518 0.82757 1.03644 1.22496 0.95939 1.02814 0.97816 0.93061 0.94078 0.87895 0.91322 0.93156 0.75689 0.87964 0.92228 0.92028 0.88865 0.83304 0.81812 0.82692 0.85743 0.91959 0.88230 0.89836 0.87520 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.44 9.49 -139.77 -1.33 -8.77 16 3 C 0.04 0.82 5.06 71.98 0.36 1.18 16 4 C 0.15 3.53 0.79 -10.77 -0.01 3.53 16 5 O -0.55 -11.01 11.70 -139.77 -1.64 -12.64 16 6 C -0.12 -3.28 5.11 30.67 0.16 -3.13 16 7 C 0.12 3.95 6.20 86.37 0.54 4.49 16 8 N -0.61 -22.28 2.97 -822.65 -2.44 -24.72 16 9 C 0.57 27.18 6.82 86.70 0.59 27.77 16 10 O -0.59 -34.62 16.18 -1.02 -0.02 -34.63 16 11 C -0.23 -10.25 4.62 -19.99 -0.09 -10.34 16 12 C -0.04 -1.16 7.77 22.52 0.18 -0.99 16 13 C -0.19 -5.21 10.03 22.25 0.22 -4.99 16 14 C -0.05 -1.43 10.03 22.30 0.22 -1.20 16 15 C -0.25 -10.63 9.16 22.36 0.20 -10.42 16 16 C 0.15 7.54 6.65 22.91 0.15 7.69 16 17 O -0.21 -13.57 8.96 -17.02 -0.15 -13.72 16 18 C -0.42 -25.30 9.49 67.93 0.64 -24.66 16 19 H 0.11 5.74 5.20 -2.91 -0.02 5.72 16 20 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 21 N -0.91 -59.02 13.67 21.62 0.30 -58.72 16 22 Si 1.02 43.79 29.55 68.60 2.03 45.82 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 C 0.11 3.16 5.33 86.36 0.46 3.62 16 27 C -0.15 -3.88 4.95 30.67 0.15 -3.72 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.39 5.54 8.57 -74.06 -0.63 4.91 16 34 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 2.41 7.00 -2.39 -0.02 2.39 16 37 H 0.09 2.63 7.81 -2.38 -0.02 2.62 16 38 H 0.15 3.80 7.75 -2.91 -0.02 3.78 16 39 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 42 H 0.27 16.08 8.31 -92.70 -0.77 15.31 16 43 H 0.10 2.16 7.81 -2.39 -0.02 2.14 16 44 H 0.08 2.49 5.39 -2.39 -0.01 2.47 16 45 H 0.11 2.22 7.64 -2.39 -0.02 2.20 16 46 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -86.43 374.72 2.62 -83.81 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.37 Total: 33.96 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.50 Total: -10.38 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.15 Total: -83.45 kcal Atomic # 8 Polarization: -66.63 SS G_CDS: -3.13 Total: -69.76 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -86.43 2.62 -83.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759970819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.507 kcal (2) G-P(sol) polarization free energy of solvation -86.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds