Wall clock time and date at job start Tue Mar 31 2020 19:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00610 * 2 1 4 4 C 1.53001 * 110.75240 * 60.84554 * 3 2 1 5 5 N 1.46498 * 109.46934 * 60.74577 * 4 3 2 6 6 C 1.34779 * 119.99932 * 174.98121 * 5 4 3 7 7 O 1.21281 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.38322 * 119.96559 * 89.99762 * 9 8 6 11 11 C 1.38268 * 120.13695 * 179.97438 * 10 9 8 12 12 C 1.38122 * 120.07079 * 359.97438 * 11 10 9 13 13 C 1.38855 * 119.93226 * 0.02562 * 12 11 10 14 14 O 1.35751 * 120.06996 * 179.97438 * 13 12 11 15 15 C 1.34823 * 117.00067 * 5.66445 * 14 13 12 16 16 H 1.08002 * 120.00171 * 5.25915 * 15 14 13 17 17 C 1.38662 * 119.99875 * 185.26124 * 15 14 13 18 18 N 1.31557 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99798 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47127 * 90.00520 * 19 17 15 21 21 H 1.48503 * 109.46958 * 210.00080 * 19 17 15 22 22 H 1.48494 * 109.47331 * 329.99741 * 19 17 15 23 23 C 1.38078 * 119.96231 * 269.72551 * 9 8 6 24 24 C 1.55303 * 110.84251 * 297.15380 * 3 2 1 25 25 C 1.54948 * 100.93995 * 275.93658 * 24 3 2 26 26 O 1.43641 * 105.13781 * 323.55900 * 25 24 3 27 27 C 1.43243 * 109.97088 * 24.42942 * 26 25 24 28 28 H 1.09002 * 109.47338 * 295.09942 * 1 2 3 29 29 H 1.08997 * 109.47689 * 175.09637 * 1 2 3 30 30 H 1.09003 * 109.46736 * 55.09483 * 1 2 3 31 31 H 1.08998 * 109.47328 * 180.74758 * 4 3 2 32 32 H 1.09009 * 109.46833 * 300.74806 * 4 3 2 33 33 H 0.96994 * 120.00291 * 354.97977 * 5 4 3 34 34 H 1.09000 * 109.46986 * 299.99814 * 8 6 5 35 35 H 1.08998 * 109.47309 * 59.99863 * 8 6 5 36 36 H 1.08001 * 119.93035 * 0.02570 * 10 9 8 37 37 H 1.08002 * 119.96680 * 180.02562 * 11 10 9 38 38 H 1.08006 * 120.03815 * 180.02562 * 12 11 10 39 39 H 0.96995 * 119.99994 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.03337 * 0.02562 * 23 9 8 41 41 H 1.08995 * 111.13315 * 33.85878 * 24 3 2 42 42 H 1.09004 * 111.12126 * 158.02624 * 24 3 2 43 43 H 1.09001 * 110.31312 * 204.64108 * 25 24 3 44 44 H 1.08999 * 110.39293 * 82.51972 * 25 24 3 45 45 H 1.09003 * 109.82566 * 238.77332 * 27 26 25 46 46 H 1.08997 * 109.90547 * 117.84349 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5942 2.0842 1.2495 5 7 2.0595 1.3754 2.4442 6 6 1.8953 1.9281 3.6624 7 8 1.3627 3.0124 3.7695 8 6 2.3744 1.1993 4.8913 9 6 2.0728 2.0257 6.1150 10 6 0.8671 1.8690 6.7745 11 6 0.5870 2.6249 7.8979 12 6 1.5111 3.5388 8.3652 13 6 2.7224 3.6985 7.7054 14 8 3.6325 4.5963 8.1620 15 6 3.3502 5.2162 9.3255 16 1 2.4771 4.9289 9.8925 17 6 4.1810 6.2226 9.7942 18 7 5.2448 6.5723 9.1037 19 14 3.7895 7.0820 11.4059 20 1 4.4469 6.3596 12.5244 21 1 4.2908 8.4790 11.3565 22 1 2.3199 7.0907 11.6180 23 6 3.0027 2.9344 6.5798 24 6 1.6300 2.0796 -1.2914 25 6 2.7048 1.5545 -2.2764 26 8 3.8950 1.4024 -1.4866 27 6 3.5480 1.2220 -0.1086 28 1 -0.3634 0.4359 0.9306 29 1 -0.3634 -1.0238 -0.0878 30 1 -0.3633 0.5881 -0.8428 31 1 2.0376 3.0795 1.2217 32 1 0.5079 2.1710 1.2785 33 1 2.4857 0.5083 2.3585 34 1 1.8636 0.2394 4.9667 35 1 3.4495 1.0342 4.8198 36 1 0.1434 1.1541 6.4118 37 1 -0.3552 2.5000 8.4110 38 1 1.2919 4.1287 9.2430 39 1 5.8262 7.2760 9.4317 40 1 3.9456 3.0534 6.0667 41 1 0.6272 1.8156 -1.6270 42 1 1.7230 3.1559 -1.1459 43 1 2.8709 2.2769 -3.0756 44 1 2.4016 0.5939 -2.6926 45 1 4.0044 2.0078 0.4934 46 1 3.8907 0.2463 0.2357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763810072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:51 Heat of formation + Delta-G solvation = -122.678898 kcal Electronic energy + Delta-G solvation = -28419.615879 eV Core-core repulsion = 24275.549638 eV Total energy + Delta-G solvation = -4144.066241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86445 -39.61240 -38.69555 -37.50826 -36.44895 -34.71150 -32.43494 -32.13863 -31.70600 -30.02204 -29.15800 -27.79506 -26.92633 -25.67308 -25.08861 -22.99177 -21.64764 -21.18909 -20.90481 -20.11886 -18.04610 -17.64068 -17.31665 -16.87300 -16.32299 -16.21424 -15.85657 -15.45142 -15.33751 -15.07769 -14.94721 -14.56787 -14.35675 -14.25882 -13.67099 -13.50392 -13.42455 -13.34041 -13.06047 -12.67303 -12.56745 -12.38064 -12.32381 -12.03952 -11.78308 -11.66282 -11.47940 -11.23605 -11.11115 -10.84891 -10.70166 -10.55868 -10.40413 -10.20322 -9.96495 -9.75033 -9.31599 -9.20835 -8.78656 -8.01630 -7.16773 -6.39540 -3.98421 2.13032 2.44156 2.75171 2.88871 3.15973 3.16752 3.21652 3.28364 3.38472 3.84771 4.00886 4.09036 4.33371 4.56268 4.63512 4.70254 4.77339 4.90554 4.94863 5.07727 5.12062 5.12612 5.19072 5.21376 5.24251 5.28967 5.35165 5.38902 5.46978 5.49700 5.54047 5.70722 5.80032 5.98064 6.23251 6.24217 6.38974 6.46503 6.64123 6.70750 6.96893 7.12636 7.31386 7.40223 7.42575 7.49286 7.88164 8.05531 8.28691 9.06244 9.77663 10.78865 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002154 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.445365 B =12995.363719 C =13910.489988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.366 6.366 3 C 0.070 3.930 4 C 0.106 3.894 5 N -0.735 5.735 6 C 0.514 3.486 7 O -0.518 6.518 8 C -0.093 4.093 9 C -0.033 4.033 10 C -0.197 4.197 11 C -0.075 4.075 12 C -0.230 4.230 13 C 0.154 3.846 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.174 4.174 24 C -0.181 4.181 25 C 0.058 3.942 26 O -0.379 6.379 27 C 0.067 3.933 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.403 0.597 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 -14.009 -19.824 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.285 6.285 3 C 0.030 3.970 4 C -0.019 4.019 5 N -0.390 5.390 6 C 0.301 3.699 7 O -0.392 6.392 8 C -0.133 4.133 9 C -0.034 4.034 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.194 4.194 24 C -0.219 4.219 25 C -0.018 4.018 26 O -0.298 6.298 27 C -0.010 4.010 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.237 0.763 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.029 -13.105 -19.877 25.126 hybrid contribution -0.648 0.270 0.819 1.079 sum -8.677 -12.835 -19.058 24.561 Atomic orbital electron populations 1.22890 0.80648 1.03140 1.00714 1.87987 1.20240 1.25439 1.94799 1.23314 0.95004 0.84484 0.94219 1.21707 1.00524 0.96336 0.83293 1.45915 1.63849 1.23704 1.05555 1.20812 0.78756 0.86262 0.84075 1.90769 1.41498 1.20669 1.86234 1.20581 1.03199 0.98872 0.90622 1.18653 0.94382 0.96303 0.94036 1.20335 0.97216 1.04734 0.99296 1.20674 0.97775 0.95199 0.95693 1.21180 0.95418 1.04090 1.04291 1.19286 0.88676 0.89684 0.92256 1.83988 1.39766 1.47106 1.37468 1.21306 1.12195 1.17502 0.95650 0.89169 1.25278 0.95399 0.96283 0.99617 1.70040 1.13029 1.28927 1.37959 0.85721 0.78913 0.78580 0.80262 1.19917 1.20301 1.19246 1.19943 1.00755 0.99996 0.98673 1.23826 1.01238 1.01789 0.95039 1.23319 0.83913 1.00608 0.94006 1.88434 1.29660 1.94186 1.17497 1.23157 0.90709 1.03083 0.84037 0.93264 0.89153 0.93505 0.89785 0.91012 0.76265 0.88355 0.88140 0.88007 0.87516 0.85629 0.92099 0.86824 0.88862 0.88668 0.89348 0.91717 0.89172 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.36 101.05 1.05 1.18 16 2 O -0.37 -2.89 10.19 -35.23 -0.36 -3.25 16 3 C 0.07 0.54 0.49 -88.68 -0.04 0.49 16 4 C 0.11 0.99 4.21 -4.04 -0.02 0.97 16 5 N -0.74 -7.40 5.26 -60.29 -0.32 -7.71 16 6 C 0.51 7.28 7.82 -10.99 -0.09 7.20 16 7 O -0.52 -9.95 16.03 5.56 0.09 -9.87 16 8 C -0.09 -1.22 5.83 -29.03 -0.17 -1.39 16 9 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 10 C -0.20 -3.58 9.70 -39.54 -0.38 -3.97 16 11 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 12 C -0.23 -5.26 9.13 -39.40 -0.36 -5.62 16 13 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 14 O -0.18 -5.29 9.76 0.07 0.00 -5.29 16 15 C -0.39 -11.20 9.44 30.89 0.29 -10.91 16 16 H 0.09 2.40 5.29 -52.49 -0.28 2.12 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 19 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.17 -3.85 9.64 -39.39 -0.38 -4.23 16 24 C -0.18 -1.14 6.16 -24.48 -0.15 -1.29 16 25 C 0.06 0.41 7.77 38.19 0.30 0.71 16 26 O -0.38 -3.76 11.36 -35.23 -0.40 -4.16 16 27 C 0.07 0.57 6.75 37.88 0.26 0.82 16 28 H 0.05 0.33 6.79 -51.93 -0.35 -0.03 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.22 6.09 -51.93 -0.32 -0.09 16 31 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.07 0.69 6.76 -51.92 -0.35 0.34 16 33 H 0.40 3.11 8.16 -40.82 -0.33 2.78 16 34 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.13 2.86 5.71 -52.48 -0.30 2.56 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 41 H 0.09 0.46 6.06 -51.93 -0.31 0.15 16 42 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.77 7.81 -51.93 -0.41 0.36 16 46 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -35.85 380.98 -6.84 -42.69 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.42 Total: 5.40 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.91 Total: -14.35 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.44 Total: -32.87 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.67 Total: -22.56 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.85 -6.84 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763810072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.992 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds