Wall clock time and date at job start Tue Mar 31 2020 19:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00610 * 2 1 4 4 C 1.53001 * 110.75240 * 60.84554 * 3 2 1 5 5 N 1.46498 * 109.46934 * 60.74577 * 4 3 2 6 6 C 1.34779 * 119.99932 * 174.98121 * 5 4 3 7 7 O 1.21281 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.38322 * 119.96559 * 89.99762 * 9 8 6 11 11 C 1.38268 * 120.13695 * 179.97438 * 10 9 8 12 12 C 1.38122 * 120.07079 * 359.97438 * 11 10 9 13 13 C 1.38855 * 119.93226 * 0.02562 * 12 11 10 14 14 O 1.35751 * 120.06996 * 179.97438 * 13 12 11 15 15 C 1.34823 * 117.00067 * 5.66445 * 14 13 12 16 16 H 1.08002 * 120.00171 * 5.25915 * 15 14 13 17 17 C 1.38662 * 119.99875 * 185.26124 * 15 14 13 18 18 N 1.31557 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99798 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47127 * 90.00520 * 19 17 15 21 21 H 1.48503 * 109.46958 * 210.00080 * 19 17 15 22 22 H 1.48494 * 109.47331 * 329.99741 * 19 17 15 23 23 C 1.38078 * 119.96231 * 269.72551 * 9 8 6 24 24 C 1.55303 * 110.84251 * 297.15380 * 3 2 1 25 25 C 1.54948 * 100.93995 * 275.93658 * 24 3 2 26 26 O 1.43641 * 105.13781 * 323.55900 * 25 24 3 27 27 C 1.43243 * 109.97088 * 24.42942 * 26 25 24 28 28 H 1.09002 * 109.47338 * 295.09942 * 1 2 3 29 29 H 1.08997 * 109.47689 * 175.09637 * 1 2 3 30 30 H 1.09003 * 109.46736 * 55.09483 * 1 2 3 31 31 H 1.08998 * 109.47328 * 180.74758 * 4 3 2 32 32 H 1.09009 * 109.46833 * 300.74806 * 4 3 2 33 33 H 0.96994 * 120.00291 * 354.97977 * 5 4 3 34 34 H 1.09000 * 109.46986 * 299.99814 * 8 6 5 35 35 H 1.08998 * 109.47309 * 59.99863 * 8 6 5 36 36 H 1.08001 * 119.93035 * 0.02570 * 10 9 8 37 37 H 1.08002 * 119.96680 * 180.02562 * 11 10 9 38 38 H 1.08006 * 120.03815 * 180.02562 * 12 11 10 39 39 H 0.96995 * 119.99994 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.03337 * 0.02562 * 23 9 8 41 41 H 1.08995 * 111.13315 * 33.85878 * 24 3 2 42 42 H 1.09004 * 111.12126 * 158.02624 * 24 3 2 43 43 H 1.09001 * 110.31312 * 204.64108 * 25 24 3 44 44 H 1.08999 * 110.39293 * 82.51972 * 25 24 3 45 45 H 1.09003 * 109.82566 * 238.77332 * 27 26 25 46 46 H 1.08997 * 109.90547 * 117.84349 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5942 2.0842 1.2495 5 7 2.0595 1.3754 2.4442 6 6 1.8953 1.9281 3.6624 7 8 1.3627 3.0124 3.7695 8 6 2.3744 1.1993 4.8913 9 6 2.0728 2.0257 6.1150 10 6 0.8671 1.8690 6.7745 11 6 0.5870 2.6249 7.8979 12 6 1.5111 3.5388 8.3652 13 6 2.7224 3.6985 7.7054 14 8 3.6325 4.5963 8.1620 15 6 3.3502 5.2162 9.3255 16 1 2.4771 4.9289 9.8925 17 6 4.1810 6.2226 9.7942 18 7 5.2448 6.5723 9.1037 19 14 3.7895 7.0820 11.4059 20 1 4.4469 6.3596 12.5244 21 1 4.2908 8.4790 11.3565 22 1 2.3199 7.0907 11.6180 23 6 3.0027 2.9344 6.5798 24 6 1.6300 2.0796 -1.2914 25 6 2.7048 1.5545 -2.2764 26 8 3.8950 1.4024 -1.4866 27 6 3.5480 1.2220 -0.1086 28 1 -0.3634 0.4359 0.9306 29 1 -0.3634 -1.0238 -0.0878 30 1 -0.3633 0.5881 -0.8428 31 1 2.0376 3.0795 1.2217 32 1 0.5079 2.1710 1.2785 33 1 2.4857 0.5083 2.3585 34 1 1.8636 0.2394 4.9667 35 1 3.4495 1.0342 4.8198 36 1 0.1434 1.1541 6.4118 37 1 -0.3552 2.5000 8.4110 38 1 1.2919 4.1287 9.2430 39 1 5.8262 7.2760 9.4317 40 1 3.9456 3.0534 6.0667 41 1 0.6272 1.8156 -1.6270 42 1 1.7230 3.1559 -1.1459 43 1 2.8709 2.2769 -3.0756 44 1 2.4016 0.5939 -2.6926 45 1 4.0044 2.0078 0.4934 46 1 3.8907 0.2463 0.2357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763810072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:50 Heat of formation + Delta-G solvation = -149.796905 kcal Electronic energy + Delta-G solvation = -28420.791804 eV Core-core repulsion = 24275.549638 eV Total energy + Delta-G solvation = -4145.242166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59760 -40.93516 -40.21281 -38.28160 -38.04688 -35.67458 -34.34433 -33.54794 -32.54445 -30.95660 -30.60416 -28.88372 -27.71637 -27.25814 -26.36592 -23.65600 -23.25399 -22.69396 -21.62686 -21.29369 -19.53381 -18.87410 -18.54308 -18.16408 -17.23050 -16.93793 -16.85888 -16.64786 -16.33710 -16.16658 -16.05647 -15.92292 -15.69468 -15.47163 -15.16011 -14.90143 -14.61355 -14.33045 -13.99676 -13.98443 -13.86351 -13.56267 -13.27857 -12.97353 -12.93408 -12.77277 -12.57033 -12.52585 -12.32091 -12.22017 -12.18039 -12.10873 -11.70920 -11.23683 -11.05672 -10.80011 -10.68310 -10.60412 -10.16793 -9.63213 -8.97476 -8.47191 -6.15578 0.52261 0.76340 1.33706 1.43756 1.51788 1.64963 2.05651 2.17712 2.58224 2.78943 2.85425 3.17669 3.24679 3.43845 3.46367 3.70896 3.80671 4.03872 4.10914 4.15190 4.19564 4.32486 4.33687 4.39489 4.45123 4.49326 4.53009 4.59343 4.63422 4.65293 4.65581 4.74573 4.79194 4.82198 4.93782 4.97060 5.07038 5.12878 5.30802 5.34603 5.65455 5.73567 5.75850 5.87057 6.02729 6.07573 6.23902 6.51783 6.97451 7.25795 7.79477 8.76602 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002154 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.445365 B =12995.363719 C =13910.489988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.374 6.374 3 C 0.080 3.920 4 C 0.106 3.894 5 N -0.714 5.714 6 C 0.517 3.483 7 O -0.577 6.577 8 C -0.091 4.091 9 C -0.026 4.026 10 C -0.180 4.180 11 C -0.074 4.074 12 C -0.247 4.247 13 C 0.111 3.889 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.020 2.980 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.254 1.254 23 C -0.193 4.193 24 C -0.177 4.177 25 C 0.052 3.948 26 O -0.403 6.403 27 C 0.063 3.937 28 H 0.042 0.958 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.418 0.582 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 -16.552 -20.711 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.293 6.293 3 C 0.039 3.961 4 C -0.018 4.018 5 N -0.368 5.368 6 C 0.304 3.696 7 O -0.455 6.455 8 C -0.131 4.131 9 C -0.026 4.026 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.266 4.266 13 C 0.061 3.939 14 O -0.141 6.141 15 C -0.489 4.489 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.178 1.178 23 C -0.212 4.212 24 C -0.215 4.215 25 C -0.023 4.023 26 O -0.323 6.323 27 C -0.013 4.013 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.255 0.745 34 H 0.162 0.838 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.531 -15.741 -20.818 28.143 hybrid contribution -0.036 0.780 0.838 1.146 sum -10.567 -14.961 -19.980 27.105 Atomic orbital electron populations 1.23040 0.79574 1.04293 1.00942 1.87982 1.21385 1.25155 1.94819 1.23139 0.94489 0.84592 0.93840 1.21748 1.00483 0.95992 0.83586 1.45717 1.62438 1.23937 1.04720 1.20913 0.77960 0.85440 0.85257 1.90764 1.44560 1.23127 1.87095 1.20701 1.05332 0.99407 0.87617 1.19190 0.93349 0.94868 0.95209 1.20969 0.97361 1.03813 0.97715 1.21131 0.98273 0.93727 0.96074 1.21298 0.95594 1.05402 1.04321 1.19894 0.89635 0.90268 0.94101 1.83943 1.42185 1.49475 1.38544 1.21812 1.12811 1.18031 0.96264 0.88266 1.26626 0.94946 0.96760 1.03895 1.70191 1.14827 1.30420 1.40685 0.84571 0.79418 0.77202 0.74899 1.18538 1.19570 1.17760 1.20227 1.01806 1.00954 0.98203 1.23841 1.01959 1.01700 0.93969 1.23495 0.83271 1.01381 0.94182 1.88408 1.31337 1.94326 1.18184 1.23180 0.91357 1.03104 0.83675 0.93909 0.87795 0.92215 0.91185 0.90865 0.74510 0.83832 0.85979 0.83481 0.83725 0.86540 0.91856 0.87538 0.87107 0.88523 0.88080 0.91178 0.89790 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.36 113.37 1.17 1.33 16 2 O -0.37 -4.90 10.19 -148.98 -1.52 -6.42 16 3 C 0.08 1.07 0.49 -9.54 0.00 1.07 16 4 C 0.11 1.83 4.21 86.38 0.36 2.19 16 5 N -0.71 -12.70 5.26 -463.05 -2.44 -15.14 16 6 C 0.52 13.51 7.82 87.66 0.69 14.20 16 7 O -0.58 -21.75 16.03 -3.03 -0.05 -21.80 16 8 C -0.09 -2.09 5.83 29.10 0.17 -1.92 16 9 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 10 C -0.18 -5.90 9.70 22.30 0.22 -5.68 16 11 C -0.07 -2.71 10.04 22.25 0.22 -2.49 16 12 C -0.25 -11.48 9.13 22.39 0.20 -11.28 16 13 C 0.11 5.89 6.65 22.58 0.15 6.04 16 14 O -0.23 -14.83 9.76 -22.67 -0.22 -15.05 16 15 C -0.41 -25.08 9.44 67.92 0.64 -24.43 16 16 H 0.10 5.55 5.29 -2.91 -0.02 5.53 16 17 C -0.03 -1.49 5.49 84.84 0.47 -1.02 16 18 N -0.92 -58.50 13.67 21.62 0.30 -58.20 16 19 Si 1.02 44.27 29.55 68.60 2.03 46.30 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 23 C -0.19 -8.72 9.64 22.39 0.22 -8.51 16 24 C -0.18 -1.88 6.16 32.05 0.20 -1.68 16 25 C 0.05 0.65 7.77 72.65 0.56 1.22 16 26 O -0.40 -7.58 11.36 -148.98 -1.69 -9.27 16 27 C 0.06 1.00 6.75 72.45 0.49 1.49 16 28 H 0.04 0.45 6.79 -2.39 -0.02 0.43 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.38 6.09 -2.39 -0.01 0.37 16 31 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.07 1.29 6.76 -2.38 -0.02 1.27 16 33 H 0.42 5.13 8.16 -92.71 -0.76 4.37 16 34 H 0.14 2.05 8.08 -2.39 -0.02 2.03 16 35 H 0.12 2.33 8.08 -2.39 -0.02 2.31 16 36 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.12 5.49 5.71 -2.91 -0.02 5.47 16 39 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.11 0.78 6.06 -2.39 -0.01 0.76 16 42 H 0.10 1.01 8.05 -2.39 -0.02 0.99 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 1.39 7.81 -2.39 -0.02 1.37 16 46 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 Total: -1.00 -85.03 380.98 2.33 -82.70 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.26 Total: 27.34 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 5.67 Total: -30.45 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.14 Total: -73.34 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -3.48 Total: -52.55 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -85.03 2.33 -82.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763810072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.096 kcal (2) G-P(sol) polarization free energy of solvation -85.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds