Wall clock time and date at job start Tue Mar 31 2020 19:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00047 * 2 1 4 4 C 1.53006 * 110.43663 * 64.00548 * 3 2 1 5 5 N 1.46500 * 109.47054 * 59.98349 * 4 3 2 6 6 C 1.34775 * 119.99791 * 184.97183 * 5 4 3 7 7 O 1.21282 * 120.00067 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00230 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.47682 * 180.02562 * 8 6 5 10 10 C 1.38321 * 119.96328 * 270.02540 * 9 8 6 11 11 C 1.38279 * 120.13801 * 179.97438 * 10 9 8 12 12 C 1.38126 * 120.06639 * 359.67415 * 11 10 9 13 13 C 1.38859 * 119.92732 * 0.59882 * 12 11 10 14 14 O 1.35758 * 120.06723 * 179.69628 * 13 12 11 15 15 C 1.34833 * 116.99633 * 5.28570 * 14 13 12 16 16 H 1.07993 * 120.00297 * 354.61245 * 15 14 13 17 17 C 1.38658 * 119.99356 * 174.88268 * 15 14 13 18 18 N 1.31554 * 120.00498 * 359.72620 * 17 15 14 19 19 Si 1.86801 * 119.99669 * 179.72896 * 17 15 14 20 20 H 1.48507 * 109.47151 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47617 * 119.99913 * 19 17 15 22 22 H 1.48502 * 109.47048 * 240.00325 * 19 17 15 23 23 C 1.38078 * 119.96590 * 89.99351 * 9 8 6 24 24 C 1.54811 * 110.49009 * 186.54754 * 3 2 1 25 25 C 1.55229 * 101.98812 * 98.00124 * 24 3 2 26 26 O 1.44382 * 103.56090 * 36.88574 * 25 24 3 27 27 C 1.43742 * 106.97632 * 320.00830 * 26 25 24 28 28 H 1.09000 * 109.46717 * 64.97159 * 1 2 3 29 29 H 1.09003 * 109.47124 * 184.97168 * 1 2 3 30 30 H 1.08998 * 109.47007 * 304.97799 * 1 2 3 31 31 H 1.09001 * 109.46887 * 299.98347 * 4 3 2 32 32 H 1.08997 * 109.46776 * 179.97438 * 4 3 2 33 33 H 0.96996 * 119.99910 * 4.98668 * 5 4 3 34 34 H 1.08998 * 109.47354 * 59.99916 * 8 6 5 35 35 H 1.09003 * 109.46798 * 300.00694 * 8 6 5 36 36 H 1.07999 * 119.92918 * 359.97233 * 10 9 8 37 37 H 1.08000 * 119.96644 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.03548 * 180.31601 * 12 11 10 39 39 H 0.96996 * 119.99924 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.03056 * 0.02562 * 23 9 8 41 41 H 1.08995 * 110.90859 * 216.12861 * 24 3 2 42 42 H 1.09004 * 110.90438 * 339.73440 * 24 3 2 43 43 H 1.08999 * 110.51998 * 278.39188 * 25 24 3 44 44 H 1.08998 * 110.77652 * 155.50097 * 25 24 3 45 45 H 1.09005 * 109.88047 * 267.09089 * 27 26 25 46 46 H 1.08996 * 109.87988 * 145.94125 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6535 2.0491 1.2887 5 7 2.1617 1.3007 2.4410 6 6 1.8781 1.7149 3.6918 7 8 1.2018 2.7069 3.8634 8 6 2.4013 0.9455 4.8772 9 6 1.9452 1.6117 6.1497 10 6 2.7258 2.5927 6.7341 11 6 2.3105 3.2067 7.9014 12 6 1.1109 2.8465 8.4838 13 6 0.3278 1.8580 7.9026 14 8 -0.8487 1.4975 8.4760 15 6 -1.2525 2.2119 9.5459 16 1 -0.6078 2.9716 9.9625 17 6 -2.4932 1.9673 10.1146 18 7 -3.2786 1.0419 9.6071 19 14 -3.0495 2.9518 11.6015 20 1 -1.9907 3.9234 11.9761 21 1 -4.2990 3.6832 11.2717 22 1 -3.3005 2.0309 12.7391 23 6 0.7482 1.2426 6.7306 24 6 3.5468 1.2145 -0.1654 25 6 3.7236 1.4761 -1.6852 26 8 2.7152 2.4672 -1.9777 27 6 1.5415 2.1046 -1.2313 28 1 -0.3633 0.4348 -0.9312 29 1 -0.3633 -1.0238 0.0891 30 1 -0.3633 0.5891 0.8420 31 1 0.5703 2.1434 1.3657 32 1 2.1045 3.0412 1.2723 33 1 2.7025 0.5073 2.3038 34 1 3.4907 0.9274 4.8465 35 1 2.0200 -0.0751 4.8449 36 1 3.6616 2.8797 6.2777 37 1 2.9224 3.9720 8.3556 38 1 0.7846 3.3300 9.3928 39 1 -4.1466 0.8711 10.0048 40 1 0.1391 0.4765 6.2737 41 1 4.0475 1.9839 0.4223 42 1 3.9091 0.2227 0.1054 43 1 3.5416 0.5640 -2.2536 44 1 4.7188 1.8669 -1.8971 45 1 0.8870 1.4873 -1.8467 46 1 1.0137 3.0029 -0.9112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763810073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:55 Heat of formation + Delta-G solvation = -122.836515 kcal Electronic energy + Delta-G solvation = -28456.256733 eV Core-core repulsion = 24312.183657 eV Total energy + Delta-G solvation = -4144.073076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86361 -39.59933 -38.69026 -37.50683 -36.44430 -34.70702 -32.42514 -32.12230 -31.65970 -29.97292 -29.15187 -27.52521 -27.14676 -25.64425 -25.04889 -23.13790 -21.66636 -21.21498 -20.78831 -20.10966 -17.93870 -17.59874 -17.28810 -16.85546 -16.70474 -16.06175 -15.63951 -15.46055 -15.21825 -15.00359 -14.91560 -14.69904 -14.34145 -14.27978 -13.75643 -13.62610 -13.37647 -13.29213 -12.94594 -12.66190 -12.45875 -12.37604 -12.18387 -12.08954 -11.77589 -11.68083 -11.47935 -11.24627 -11.11409 -10.81887 -10.72472 -10.56779 -10.39264 -10.30033 -10.03996 -9.69719 -9.28423 -9.17439 -8.79518 -8.01651 -7.16643 -6.39782 -3.98615 2.13301 2.44107 2.77254 2.93388 3.15305 3.17001 3.22454 3.30003 3.50027 3.91305 4.00811 4.07491 4.30024 4.58835 4.63152 4.72236 4.89372 4.92069 4.96604 5.04150 5.07610 5.16134 5.19567 5.24019 5.26238 5.27399 5.34382 5.39669 5.47727 5.52640 5.56611 5.71044 5.80045 5.97964 6.22669 6.25486 6.30785 6.38763 6.67135 6.70905 6.96739 7.12563 7.31631 7.41526 7.44960 7.49342 7.88033 8.05653 8.31365 9.06282 9.77437 10.78713 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.002165 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.325514 B =12928.734165 C =13678.867888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.367 6.367 3 C 0.071 3.929 4 C 0.104 3.896 5 N -0.732 5.732 6 C 0.513 3.487 7 O -0.519 6.519 8 C -0.093 4.093 9 C -0.033 4.033 10 C -0.196 4.196 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.154 3.846 14 O -0.181 6.181 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.174 4.174 24 C -0.143 4.143 25 C 0.047 3.953 26 O -0.371 6.371 27 C 0.027 3.973 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.402 0.598 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.268 0.732 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.713 -2.176 -20.653 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.286 6.286 3 C 0.031 3.969 4 C -0.021 4.021 5 N -0.387 5.387 6 C 0.300 3.700 7 O -0.392 6.392 8 C -0.132 4.132 9 C -0.034 4.034 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.101 3.899 14 O -0.084 6.084 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.193 4.193 24 C -0.181 4.181 25 C -0.029 4.029 26 O -0.290 6.290 27 C -0.051 4.051 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.091 0.909 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.929 -1.694 -20.656 24.428 hybrid contribution -0.376 0.175 0.808 0.908 sum 12.553 -1.519 -19.848 23.534 Atomic orbital electron populations 1.22907 0.80484 1.03602 1.00650 1.87986 1.20345 1.25466 1.94841 1.23143 0.94881 0.84605 0.94282 1.21793 1.00601 0.95511 0.84147 1.45866 1.56229 1.31494 1.05068 1.20799 0.80183 0.85357 0.83659 1.90770 1.37133 1.25868 1.85478 1.20576 1.02061 0.99826 0.90776 1.18658 0.94418 0.96646 0.93664 1.20344 1.01042 1.01285 0.98840 1.20680 0.95441 0.98049 0.95159 1.21179 0.97004 1.03122 1.03689 1.19272 0.87200 0.92026 0.91400 1.83978 1.30777 1.51873 1.41808 1.21364 1.01825 1.18169 1.05232 0.89077 1.25276 0.94896 0.97190 0.99236 1.70049 1.09777 1.30282 1.39925 0.85655 0.78999 0.79000 0.79806 1.19124 1.20184 1.20204 1.19936 0.97658 1.05193 0.96532 1.23232 0.92370 1.04578 0.97878 1.23641 0.92985 0.92459 0.93851 1.88915 1.22957 1.49039 1.68064 1.23785 0.89418 1.00181 0.91723 0.93606 0.88960 0.92992 0.90677 0.90310 0.76370 0.88378 0.88236 0.87961 0.87489 0.85619 0.92178 0.86879 0.88623 0.88516 0.91629 0.88406 0.90863 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.37 101.05 1.05 1.19 16 2 O -0.37 -3.09 10.21 -35.23 -0.36 -3.45 16 3 C 0.07 0.55 0.65 -89.09 -0.06 0.49 16 4 C 0.10 1.01 4.05 -4.04 -0.02 0.99 16 5 N -0.73 -7.49 5.28 -60.29 -0.32 -7.80 16 6 C 0.51 7.38 7.82 -10.99 -0.09 7.29 16 7 O -0.52 -10.11 16.03 5.56 0.09 -10.02 16 8 C -0.09 -1.23 5.83 -29.04 -0.17 -1.40 16 9 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 10 C -0.20 -3.58 9.70 -39.54 -0.38 -3.96 16 11 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 12 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16 13 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 14 O -0.18 -5.32 9.76 0.02 0.00 -5.32 16 15 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 16 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 19 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 C -0.17 -3.85 9.64 -39.40 -0.38 -4.23 16 24 C -0.14 -0.89 5.88 -24.60 -0.14 -1.03 16 25 C 0.05 0.30 7.72 38.34 0.30 0.60 16 26 O -0.37 -3.39 11.52 -35.23 -0.41 -3.80 16 27 C 0.03 0.21 6.62 37.73 0.25 0.46 16 28 H 0.05 0.28 6.52 -51.93 -0.34 -0.06 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.44 6.38 -51.93 -0.33 0.11 16 31 H 0.08 0.82 6.61 -51.93 -0.34 0.48 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 3.10 8.06 -40.82 -0.33 2.77 16 34 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 35 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 41 H 0.10 0.58 7.87 -51.93 -0.41 0.17 16 42 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.53 6.41 -51.93 -0.33 0.20 16 46 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -35.90 380.52 -6.85 -42.75 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.41 Total: 5.52 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.92 Total: -14.47 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.44 Total: -32.96 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.68 Total: -22.59 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.90 -6.85 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763810073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.084 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds