Wall clock time and date at job start Tue Mar 31 2020 19:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00047 * 2 1 4 4 C 1.53006 * 110.43663 * 64.00548 * 3 2 1 5 5 N 1.46500 * 109.47054 * 59.98349 * 4 3 2 6 6 C 1.34775 * 119.99791 * 184.97183 * 5 4 3 7 7 O 1.21282 * 120.00067 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00230 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.47682 * 180.02562 * 8 6 5 10 10 C 1.38321 * 119.96328 * 270.02540 * 9 8 6 11 11 C 1.38279 * 120.13801 * 179.97438 * 10 9 8 12 12 C 1.38126 * 120.06639 * 359.67415 * 11 10 9 13 13 C 1.38859 * 119.92732 * 0.59882 * 12 11 10 14 14 O 1.35758 * 120.06723 * 179.69628 * 13 12 11 15 15 C 1.34833 * 116.99633 * 5.28570 * 14 13 12 16 16 H 1.07993 * 120.00297 * 354.61245 * 15 14 13 17 17 C 1.38658 * 119.99356 * 174.88268 * 15 14 13 18 18 N 1.31554 * 120.00498 * 359.72620 * 17 15 14 19 19 Si 1.86801 * 119.99669 * 179.72896 * 17 15 14 20 20 H 1.48507 * 109.47151 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47617 * 119.99913 * 19 17 15 22 22 H 1.48502 * 109.47048 * 240.00325 * 19 17 15 23 23 C 1.38078 * 119.96590 * 89.99351 * 9 8 6 24 24 C 1.54811 * 110.49009 * 186.54754 * 3 2 1 25 25 C 1.55229 * 101.98812 * 98.00124 * 24 3 2 26 26 O 1.44382 * 103.56090 * 36.88574 * 25 24 3 27 27 C 1.43742 * 106.97632 * 320.00830 * 26 25 24 28 28 H 1.09000 * 109.46717 * 64.97159 * 1 2 3 29 29 H 1.09003 * 109.47124 * 184.97168 * 1 2 3 30 30 H 1.08998 * 109.47007 * 304.97799 * 1 2 3 31 31 H 1.09001 * 109.46887 * 299.98347 * 4 3 2 32 32 H 1.08997 * 109.46776 * 179.97438 * 4 3 2 33 33 H 0.96996 * 119.99910 * 4.98668 * 5 4 3 34 34 H 1.08998 * 109.47354 * 59.99916 * 8 6 5 35 35 H 1.09003 * 109.46798 * 300.00694 * 8 6 5 36 36 H 1.07999 * 119.92918 * 359.97233 * 10 9 8 37 37 H 1.08000 * 119.96644 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.03548 * 180.31601 * 12 11 10 39 39 H 0.96996 * 119.99924 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.03056 * 0.02562 * 23 9 8 41 41 H 1.08995 * 110.90859 * 216.12861 * 24 3 2 42 42 H 1.09004 * 110.90438 * 339.73440 * 24 3 2 43 43 H 1.08999 * 110.51998 * 278.39188 * 25 24 3 44 44 H 1.08998 * 110.77652 * 155.50097 * 25 24 3 45 45 H 1.09005 * 109.88047 * 267.09089 * 27 26 25 46 46 H 1.08996 * 109.87988 * 145.94125 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6535 2.0491 1.2887 5 7 2.1617 1.3007 2.4410 6 6 1.8781 1.7149 3.6918 7 8 1.2018 2.7069 3.8634 8 6 2.4013 0.9455 4.8772 9 6 1.9452 1.6117 6.1497 10 6 2.7258 2.5927 6.7341 11 6 2.3105 3.2067 7.9014 12 6 1.1109 2.8465 8.4838 13 6 0.3278 1.8580 7.9026 14 8 -0.8487 1.4975 8.4760 15 6 -1.2525 2.2119 9.5459 16 1 -0.6078 2.9716 9.9625 17 6 -2.4932 1.9673 10.1146 18 7 -3.2786 1.0419 9.6071 19 14 -3.0495 2.9518 11.6015 20 1 -1.9907 3.9234 11.9761 21 1 -4.2990 3.6832 11.2717 22 1 -3.3005 2.0309 12.7391 23 6 0.7482 1.2426 6.7306 24 6 3.5468 1.2145 -0.1654 25 6 3.7236 1.4761 -1.6852 26 8 2.7152 2.4672 -1.9777 27 6 1.5415 2.1046 -1.2313 28 1 -0.3633 0.4348 -0.9312 29 1 -0.3633 -1.0238 0.0891 30 1 -0.3633 0.5891 0.8420 31 1 0.5703 2.1434 1.3657 32 1 2.1045 3.0412 1.2723 33 1 2.7025 0.5073 2.3038 34 1 3.4907 0.9274 4.8465 35 1 2.0200 -0.0751 4.8449 36 1 3.6616 2.8797 6.2777 37 1 2.9224 3.9720 8.3556 38 1 0.7846 3.3300 9.3928 39 1 -4.1466 0.8711 10.0048 40 1 0.1391 0.4765 6.2737 41 1 4.0475 1.9839 0.4223 42 1 3.9091 0.2227 0.1054 43 1 3.5416 0.5640 -2.2536 44 1 4.7188 1.8669 -1.8971 45 1 0.8870 1.4873 -1.8467 46 1 1.0137 3.0029 -0.9112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763810073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:54 Heat of formation + Delta-G solvation = -150.061867 kcal Electronic energy + Delta-G solvation = -28457.437313 eV Core-core repulsion = 24312.183657 eV Total energy + Delta-G solvation = -4145.253656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59879 -40.93500 -40.20502 -38.28371 -38.05470 -35.68977 -34.34770 -33.54674 -32.48818 -30.94188 -30.54909 -28.76390 -27.78601 -27.33709 -26.34937 -23.66350 -23.29014 -22.78009 -21.51324 -21.31596 -19.52952 -18.88005 -18.41999 -18.13610 -17.51921 -16.87292 -16.70238 -16.67639 -16.29226 -16.13640 -16.06042 -15.79997 -15.68685 -15.46996 -15.28267 -14.97084 -14.56709 -14.37108 -14.19225 -13.96819 -13.73592 -13.55326 -13.18275 -12.99041 -12.83519 -12.71489 -12.65235 -12.50634 -12.34922 -12.21731 -12.16903 -12.08542 -11.73243 -11.21106 -11.05418 -10.89576 -10.81219 -10.55627 -10.16284 -9.63517 -8.97547 -8.47767 -6.16108 0.52009 0.75991 1.33272 1.42204 1.52104 1.65765 2.07315 2.17307 2.57204 2.85068 2.94929 3.16617 3.29889 3.44296 3.45192 3.70342 3.81720 4.05391 4.10885 4.13628 4.22563 4.29939 4.32377 4.35121 4.42810 4.46344 4.52540 4.59405 4.61383 4.65281 4.67172 4.74179 4.82636 4.83846 4.90140 5.00680 5.07358 5.13074 5.30628 5.35941 5.65392 5.73066 5.73255 5.75716 6.02695 6.04426 6.23777 6.54422 6.97056 7.27727 7.78849 8.76142 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.002165 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.325514 B =12928.734165 C =13678.867888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.373 6.373 3 C 0.077 3.923 4 C 0.104 3.896 5 N -0.709 5.709 6 C 0.515 3.485 7 O -0.579 6.579 8 C -0.090 4.090 9 C -0.026 4.026 10 C -0.179 4.179 11 C -0.074 4.074 12 C -0.247 4.247 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.265 1.265 23 C -0.192 4.192 24 C -0.138 4.138 25 C 0.043 3.957 26 O -0.393 6.393 27 C 0.025 3.975 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.418 0.582 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.045 -1.808 -21.759 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.292 6.292 3 C 0.037 3.963 4 C -0.021 4.021 5 N -0.363 5.363 6 C 0.303 3.697 7 O -0.458 6.458 8 C -0.129 4.129 9 C -0.027 4.027 10 C -0.198 4.198 11 C -0.092 4.092 12 C -0.266 4.266 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.489 4.489 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.190 1.190 23 C -0.212 4.212 24 C -0.176 4.176 25 C -0.033 4.033 26 O -0.312 6.312 27 C -0.053 4.053 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.256 0.744 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.133 0.867 45 H 0.096 0.904 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.345 -1.361 -21.822 27.299 hybrid contribution -1.139 0.051 0.880 1.440 sum 15.206 -1.310 -20.942 25.913 Atomic orbital electron populations 1.22977 0.80212 1.04074 1.00683 1.87980 1.20697 1.25686 1.94789 1.23092 0.96097 0.84156 0.92951 1.21821 0.99633 0.95779 0.84823 1.45648 1.55101 1.31505 1.04051 1.20943 0.79350 0.84539 0.84912 1.90765 1.40010 1.28642 1.86371 1.20694 1.04913 0.99906 0.87420 1.19200 0.92483 0.95976 0.94996 1.20982 1.02025 0.99222 0.97557 1.21139 0.94205 0.98452 0.95410 1.21299 0.98446 1.02997 1.03895 1.19880 0.86948 0.94054 0.93023 1.83937 1.33232 1.53853 1.43159 1.21860 1.02664 1.18683 1.05701 0.88261 1.26617 0.94548 0.98357 1.02707 1.70193 1.10598 1.32858 1.42449 0.84515 0.78717 0.77542 0.75308 1.17528 1.19413 1.19033 1.20216 0.99388 1.05438 0.96121 1.23267 0.90800 1.05633 0.97872 1.23824 0.93174 0.92298 0.93995 1.88896 1.23730 1.50157 1.68433 1.23803 0.89382 1.00305 0.91769 0.92385 0.88029 0.94490 0.92343 0.90592 0.74425 0.83597 0.86147 0.83388 0.83707 0.86529 0.91864 0.87650 0.88133 0.86989 0.91151 0.86747 0.90375 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.37 113.37 1.18 1.40 16 2 O -0.37 -5.52 10.21 -148.98 -1.52 -7.04 16 3 C 0.08 1.05 0.65 -9.80 -0.01 1.05 16 4 C 0.10 1.89 4.05 86.38 0.35 2.24 16 5 N -0.71 -12.69 5.28 -463.06 -2.44 -15.14 16 6 C 0.51 13.63 7.82 87.66 0.69 14.31 16 7 O -0.58 -22.23 16.03 -3.04 -0.05 -22.28 16 8 C -0.09 -2.05 5.83 29.10 0.17 -1.88 16 9 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 10 C -0.18 -5.88 9.70 22.30 0.22 -5.66 16 11 C -0.07 -2.72 10.04 22.25 0.22 -2.49 16 12 C -0.25 -11.51 9.17 22.39 0.21 -11.30 16 13 C 0.11 5.89 6.65 22.57 0.15 6.04 16 14 O -0.23 -14.85 9.76 -22.86 -0.22 -15.07 16 15 C -0.41 -25.13 9.49 67.92 0.64 -24.49 16 16 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 17 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 18 N -0.92 -58.37 13.67 21.61 0.30 -58.07 16 19 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 20 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 C -0.19 -8.73 9.64 22.39 0.22 -8.52 16 24 C -0.14 -1.30 5.88 31.98 0.19 -1.11 16 25 C 0.04 0.44 7.72 72.75 0.56 1.01 16 26 O -0.39 -6.56 11.52 -148.98 -1.72 -8.27 16 27 C 0.03 0.36 6.62 72.35 0.48 0.84 16 28 H 0.06 0.65 6.52 -2.39 -0.02 0.64 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.62 6.38 -2.39 -0.02 0.61 16 31 H 0.06 1.29 6.61 -2.39 -0.02 1.27 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.42 4.87 8.06 -92.71 -0.75 4.13 16 34 H 0.15 2.00 8.09 -2.39 -0.02 1.98 16 35 H 0.12 2.32 8.08 -2.39 -0.02 2.30 16 36 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 37 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 38 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 39 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.10 0.87 7.87 -2.39 -0.02 0.85 16 42 H 0.11 0.73 8.08 -2.38 -0.02 0.71 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 1.04 6.41 -2.38 -0.02 1.02 16 46 H 0.09 1.33 7.69 -2.39 -0.02 1.31 16 Total: -1.00 -85.28 380.52 2.27 -83.01 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.27 Total: 27.02 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 5.64 Total: -30.60 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -2.15 Total: -73.21 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -3.51 Total: -52.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -85.28 2.27 -83.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763810073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.050 kcal (2) G-P(sol) polarization free energy of solvation -85.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds