Wall clock time and date at job start Tue Mar 31 2020 19:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00041 * 2 1 4 4 C 1.52994 * 110.43779 * 304.77465 * 3 2 1 5 5 N 1.46498 * 109.47042 * 301.22756 * 4 3 2 6 6 C 1.34778 * 120.00362 * 175.01667 * 5 4 3 7 7 O 1.21284 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00227 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.38296 * 119.92556 * 269.72284 * 9 8 6 11 11 C 1.38099 * 120.06677 * 179.72566 * 10 9 8 12 12 C 1.38885 * 119.92992 * 0.54482 * 11 10 9 13 13 O 1.35749 * 120.06820 * 179.74820 * 12 11 10 14 14 C 1.34830 * 116.99776 * 185.69337 * 13 12 11 15 15 H 1.07999 * 120.00006 * 5.31710 * 14 13 12 16 16 C 1.38650 * 120.00029 * 185.31032 * 14 13 12 17 17 N 1.31559 * 120.00051 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99959 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47134 * 90.00092 * 18 16 14 20 20 H 1.48502 * 109.46919 * 209.99591 * 18 16 14 21 21 H 1.48494 * 109.47088 * 329.99500 * 18 16 14 22 22 C 1.38875 * 119.85999 * 359.73169 * 12 11 10 23 23 C 1.38105 * 119.93114 * 359.97438 * 22 12 11 24 24 C 1.54818 * 110.48649 * 67.31826 * 3 2 1 25 25 C 1.55339 * 101.93359 * 97.82342 * 24 3 2 26 26 O 1.44376 * 103.50328 * 37.05186 * 25 24 3 27 27 C 1.43743 * 106.97872 * 319.90957 * 26 25 24 28 28 H 1.08997 * 109.46835 * 295.23540 * 1 2 3 29 29 H 1.09001 * 109.46930 * 175.23988 * 1 2 3 30 30 H 1.08998 * 109.46717 * 55.23506 * 1 2 3 31 31 H 1.09000 * 109.47245 * 61.22846 * 4 3 2 32 32 H 1.08997 * 109.47340 * 181.22845 * 4 3 2 33 33 H 0.96998 * 119.99949 * 355.01246 * 5 4 3 34 34 H 1.09000 * 109.46702 * 299.99533 * 8 6 5 35 35 H 1.08993 * 109.47561 * 59.99407 * 8 6 5 36 36 H 1.08000 * 119.97135 * 0.02562 * 10 9 8 37 37 H 1.08007 * 120.03572 * 180.27503 * 11 10 9 38 38 H 0.97002 * 120.00171 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.03337 * 179.97438 * 22 12 11 40 40 H 1.07994 * 119.96217 * 179.97438 * 23 22 12 41 41 H 1.08999 * 110.90917 * 215.99767 * 24 3 2 42 42 H 1.08997 * 110.90609 * 339.59632 * 24 3 2 43 43 H 1.09004 * 110.64051 * 278.53581 * 25 24 3 44 44 H 1.09003 * 110.72697 * 155.60966 * 25 24 3 45 45 H 1.09003 * 109.87971 * 267.09126 * 27 26 25 46 46 H 1.08999 * 110.00832 * 146.00397 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4806 2.1261 -1.1776 5 7 1.7946 1.4384 -2.4325 6 6 1.3357 1.9269 -3.6018 7 8 0.6624 2.9356 -3.6151 8 6 1.6583 1.2192 -4.8925 9 6 1.0310 1.9629 -6.0435 10 6 -0.2472 1.6384 -6.4599 11 6 -0.8270 2.3218 -7.5107 12 6 -0.1206 3.3282 -8.1566 13 8 -0.6858 3.9983 -9.1931 14 6 0.0946 4.8795 -9.8506 15 1 1.1420 4.9639 -9.6015 16 6 -0.4477 5.6773 -10.8465 17 7 0.3139 6.5368 -11.4884 18 14 -2.2596 5.5317 -11.2769 19 1 -3.0446 6.4739 -10.4394 20 1 -2.4558 5.8630 -12.7112 21 1 -2.7187 4.1426 -11.0225 22 6 1.1650 3.6477 -7.7397 23 6 1.7369 2.9647 -6.6844 24 6 1.7198 2.0279 1.3381 25 6 3.0329 1.7784 2.1295 26 8 4.0585 1.8662 1.1172 27 6 3.5474 1.2115 -0.0560 28 1 -0.3633 0.4381 0.9296 29 1 -0.3633 -1.0241 -0.0853 30 1 -0.3633 0.5860 -0.8442 31 1 0.4003 2.2386 -1.0854 32 1 1.9498 3.1099 -1.1751 33 1 2.3328 0.6316 -2.4218 34 1 2.7393 1.1848 -5.0277 35 1 1.2639 0.2037 -4.8585 36 1 -0.7945 0.8531 -5.9598 37 1 -1.8270 2.0710 -7.8326 38 1 -0.0655 7.0952 -12.1849 39 1 1.7169 4.4294 -8.2403 40 1 2.7367 3.2124 -6.3601 41 1 1.5578 3.0938 1.1775 42 1 0.8663 1.5783 1.8456 43 1 3.0256 0.7875 2.5835 44 1 3.1771 2.5464 2.8895 45 1 3.8549 0.1658 -0.0606 46 1 3.9168 1.7102 -0.9522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763812184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:03 Heat of formation + Delta-G solvation = -120.942069 kcal Electronic energy + Delta-G solvation = -28326.596838 eV Core-core repulsion = 24182.605911 eV Total energy + Delta-G solvation = -4143.990927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92707 -39.65853 -38.86009 -37.64266 -36.65055 -34.71200 -32.51767 -32.08477 -31.43748 -30.20822 -29.90144 -27.82977 -26.81567 -25.72040 -24.71680 -23.19052 -22.06430 -21.06900 -20.84559 -20.03475 -17.99815 -17.86377 -17.40270 -17.16874 -16.45804 -16.39553 -15.86565 -15.55872 -15.36836 -15.12975 -14.70386 -14.63813 -14.42018 -13.96312 -13.79860 -13.65810 -13.39999 -13.32790 -13.14728 -12.77393 -12.64411 -12.38695 -12.34952 -12.17627 -12.08826 -11.75000 -11.60758 -11.28233 -11.14333 -10.92309 -10.72636 -10.64975 -10.25972 -10.15313 -10.12175 -9.76810 -9.37675 -9.26490 -8.83304 -8.20220 -7.27768 -6.39007 -4.05160 2.17351 2.19119 2.70258 2.86889 3.22895 3.25283 3.28561 3.38704 3.42622 3.86003 4.05659 4.25567 4.26306 4.48062 4.57520 4.66638 4.81299 4.86118 4.89890 4.95457 5.05371 5.10286 5.11911 5.16087 5.17959 5.23845 5.28053 5.29437 5.35771 5.37971 5.49108 5.62417 5.69135 5.78472 6.16778 6.18385 6.20563 6.36626 6.59778 6.62809 6.82857 7.05499 7.25579 7.34133 7.37397 7.64997 7.83104 8.06960 8.24447 8.96474 9.59511 10.68731 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.001988 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.948382 B =14084.201901 C =14387.363287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.368 6.368 3 C 0.072 3.928 4 C 0.102 3.898 5 N -0.736 5.736 6 C 0.510 3.490 7 O -0.520 6.520 8 C -0.081 4.081 9 C -0.162 4.162 10 C -0.062 4.062 11 C -0.191 4.191 12 C 0.162 3.838 13 O -0.218 6.218 14 C -0.388 4.388 15 H 0.106 0.894 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.219 4.219 23 C -0.058 4.058 24 C -0.178 4.178 25 C 0.051 3.949 26 O -0.371 6.371 27 C 0.059 3.941 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -14.642 26.094 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.287 6.287 3 C 0.031 3.969 4 C -0.023 4.023 5 N -0.391 5.391 6 C 0.297 3.703 7 O -0.394 6.394 8 C -0.121 4.121 9 C -0.163 4.163 10 C -0.080 4.080 11 C -0.211 4.211 12 C 0.110 3.890 13 O -0.123 6.123 14 C -0.463 4.463 15 H 0.123 0.877 16 C -0.141 4.141 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.238 4.238 23 C -0.076 4.076 24 C -0.216 4.216 25 C -0.026 4.026 26 O -0.289 6.289 27 C -0.018 4.018 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.236 0.764 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.571 -13.783 25.803 29.471 hybrid contribution -0.843 -0.087 -0.184 0.867 sum 2.728 -13.869 25.619 29.260 Atomic orbital electron populations 1.22889 0.80504 1.03296 1.00682 1.87967 1.20357 1.25561 1.94830 1.23160 0.95004 0.84366 0.94355 1.21817 1.01647 0.96098 0.82726 1.45979 1.56699 1.30734 1.05718 1.21065 0.79170 0.85139 0.84948 1.90756 1.37165 1.24512 1.86953 1.20419 1.02205 0.99254 0.90191 1.18692 0.96202 1.01954 0.99438 1.20390 0.93862 0.98296 0.95484 1.20144 1.00877 0.99502 1.00539 1.19136 0.91621 0.91143 0.87150 1.83584 1.40124 1.49986 1.38604 1.20764 0.93987 1.15552 1.16046 0.87664 1.24473 0.99960 0.94306 0.95346 1.69650 1.36477 1.22009 1.23677 0.86176 0.83431 0.79862 0.77402 1.19920 1.20799 1.18357 1.21230 0.96877 1.04535 1.01150 1.20569 0.98358 0.94138 0.94567 1.23744 0.99935 1.02382 0.95580 1.23589 0.85478 1.01985 0.91524 1.88933 1.39303 1.78355 1.22337 1.23156 0.89415 0.99216 0.89966 0.93718 0.89156 0.92969 0.90558 0.90224 0.76387 0.88765 0.88831 0.87256 0.86569 0.91092 0.84954 0.87517 0.88998 0.89027 0.91625 0.88482 0.90593 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.36 101.05 1.05 1.18 16 2 O -0.37 -2.72 10.12 -35.23 -0.36 -3.07 16 3 C 0.07 0.50 0.65 -89.09 -0.06 0.44 16 4 C 0.10 0.89 3.79 -4.05 -0.02 0.87 16 5 N -0.74 -6.72 5.09 -60.30 -0.31 -7.02 16 6 C 0.51 6.62 7.82 -10.99 -0.09 6.53 16 7 O -0.52 -9.37 16.03 5.55 0.09 -9.28 16 8 C -0.08 -0.95 5.83 -29.03 -0.17 -1.12 16 9 C -0.16 -2.71 4.38 -104.58 -0.46 -3.17 16 10 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 11 C -0.19 -3.94 9.99 -39.39 -0.39 -4.33 16 12 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 13 O -0.22 -5.91 8.59 0.05 0.00 -5.90 16 14 C -0.39 -11.15 9.90 30.88 0.31 -10.85 16 15 H 0.11 3.09 5.52 -52.49 -0.29 2.80 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.78 13.96 55.48 0.77 -25.00 16 18 Si 0.91 22.08 28.62 -169.99 -4.86 17.21 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.22 -4.90 9.13 -39.39 -0.36 -5.26 16 23 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 24 C -0.18 -1.04 6.26 -24.53 -0.15 -1.20 16 25 C 0.05 0.31 7.73 38.40 0.30 0.61 16 26 O -0.37 -3.27 11.52 -35.23 -0.41 -3.67 16 27 C 0.06 0.43 6.72 37.73 0.25 0.69 16 28 H 0.04 0.22 6.64 -51.93 -0.34 -0.12 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.37 6.19 -51.93 -0.32 0.05 16 31 H 0.08 0.73 6.54 -51.93 -0.34 0.39 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 2.71 8.07 -40.82 -0.33 2.38 16 34 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 38 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.13 3.10 5.71 -52.49 -0.30 2.80 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.09 0.52 7.87 -51.93 -0.41 0.11 16 42 H 0.09 0.44 6.45 -51.93 -0.33 0.11 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.52 7.97 -51.93 -0.41 0.10 16 46 H 0.10 0.70 7.48 -51.93 -0.39 0.31 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -34.25 379.01 -6.68 -40.92 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.41 Total: 3.37 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.91 Total: -13.26 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.47 Total: -32.03 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.67 Total: -21.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.25 -6.68 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763812184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.017 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds