Wall clock time and date at job start Tue Mar 31 2020 19:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00041 * 2 1 4 4 C 1.52994 * 110.43779 * 304.77465 * 3 2 1 5 5 N 1.46498 * 109.47042 * 301.22756 * 4 3 2 6 6 C 1.34778 * 120.00362 * 175.01667 * 5 4 3 7 7 O 1.21284 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00227 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.38296 * 119.92556 * 269.72284 * 9 8 6 11 11 C 1.38099 * 120.06677 * 179.72566 * 10 9 8 12 12 C 1.38885 * 119.92992 * 0.54482 * 11 10 9 13 13 O 1.35749 * 120.06820 * 179.74820 * 12 11 10 14 14 C 1.34830 * 116.99776 * 185.69337 * 13 12 11 15 15 H 1.07999 * 120.00006 * 5.31710 * 14 13 12 16 16 C 1.38650 * 120.00029 * 185.31032 * 14 13 12 17 17 N 1.31559 * 120.00051 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99959 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47134 * 90.00092 * 18 16 14 20 20 H 1.48502 * 109.46919 * 209.99591 * 18 16 14 21 21 H 1.48494 * 109.47088 * 329.99500 * 18 16 14 22 22 C 1.38875 * 119.85999 * 359.73169 * 12 11 10 23 23 C 1.38105 * 119.93114 * 359.97438 * 22 12 11 24 24 C 1.54818 * 110.48649 * 67.31826 * 3 2 1 25 25 C 1.55339 * 101.93359 * 97.82342 * 24 3 2 26 26 O 1.44376 * 103.50328 * 37.05186 * 25 24 3 27 27 C 1.43743 * 106.97872 * 319.90957 * 26 25 24 28 28 H 1.08997 * 109.46835 * 295.23540 * 1 2 3 29 29 H 1.09001 * 109.46930 * 175.23988 * 1 2 3 30 30 H 1.08998 * 109.46717 * 55.23506 * 1 2 3 31 31 H 1.09000 * 109.47245 * 61.22846 * 4 3 2 32 32 H 1.08997 * 109.47340 * 181.22845 * 4 3 2 33 33 H 0.96998 * 119.99949 * 355.01246 * 5 4 3 34 34 H 1.09000 * 109.46702 * 299.99533 * 8 6 5 35 35 H 1.08993 * 109.47561 * 59.99407 * 8 6 5 36 36 H 1.08000 * 119.97135 * 0.02562 * 10 9 8 37 37 H 1.08007 * 120.03572 * 180.27503 * 11 10 9 38 38 H 0.97002 * 120.00171 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.03337 * 179.97438 * 22 12 11 40 40 H 1.07994 * 119.96217 * 179.97438 * 23 22 12 41 41 H 1.08999 * 110.90917 * 215.99767 * 24 3 2 42 42 H 1.08997 * 110.90609 * 339.59632 * 24 3 2 43 43 H 1.09004 * 110.64051 * 278.53581 * 25 24 3 44 44 H 1.09003 * 110.72697 * 155.60966 * 25 24 3 45 45 H 1.09003 * 109.87971 * 267.09126 * 27 26 25 46 46 H 1.08999 * 110.00832 * 146.00397 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4806 2.1261 -1.1776 5 7 1.7946 1.4384 -2.4325 6 6 1.3357 1.9269 -3.6018 7 8 0.6624 2.9356 -3.6151 8 6 1.6583 1.2192 -4.8925 9 6 1.0310 1.9629 -6.0435 10 6 -0.2472 1.6384 -6.4599 11 6 -0.8270 2.3218 -7.5107 12 6 -0.1206 3.3282 -8.1566 13 8 -0.6858 3.9983 -9.1931 14 6 0.0946 4.8795 -9.8506 15 1 1.1420 4.9639 -9.6015 16 6 -0.4477 5.6773 -10.8465 17 7 0.3139 6.5368 -11.4884 18 14 -2.2596 5.5317 -11.2769 19 1 -3.0446 6.4739 -10.4394 20 1 -2.4558 5.8630 -12.7112 21 1 -2.7187 4.1426 -11.0225 22 6 1.1650 3.6477 -7.7397 23 6 1.7369 2.9647 -6.6844 24 6 1.7198 2.0279 1.3381 25 6 3.0329 1.7784 2.1295 26 8 4.0585 1.8662 1.1172 27 6 3.5474 1.2115 -0.0560 28 1 -0.3633 0.4381 0.9296 29 1 -0.3633 -1.0241 -0.0853 30 1 -0.3633 0.5860 -0.8442 31 1 0.4003 2.2386 -1.0854 32 1 1.9498 3.1099 -1.1751 33 1 2.3328 0.6316 -2.4218 34 1 2.7393 1.1848 -5.0277 35 1 1.2639 0.2037 -4.8585 36 1 -0.7945 0.8531 -5.9598 37 1 -1.8270 2.0710 -7.8326 38 1 -0.0655 7.0952 -12.1849 39 1 1.7169 4.4294 -8.2403 40 1 2.7367 3.2124 -6.3601 41 1 1.5578 3.0938 1.1775 42 1 0.8663 1.5783 1.8456 43 1 3.0256 0.7875 2.5835 44 1 3.1771 2.5464 2.8895 45 1 3.8549 0.1658 -0.0606 46 1 3.9168 1.7102 -0.9522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763812184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:02 Heat of formation + Delta-G solvation = -146.309396 kcal Electronic energy + Delta-G solvation = -28327.696848 eV Core-core repulsion = 24182.605911 eV Total energy + Delta-G solvation = -4145.090937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59397 -40.98227 -40.23628 -38.39314 -38.11726 -35.59968 -34.52364 -33.16888 -32.38192 -31.80328 -30.51658 -28.83496 -27.81949 -26.93947 -26.05373 -23.77608 -23.68605 -22.41676 -21.50293 -21.12975 -19.82735 -19.12321 -18.60797 -18.07561 -17.32021 -17.04707 -16.81415 -16.54151 -16.23145 -16.15566 -15.83838 -15.76624 -15.68568 -15.49151 -15.18426 -15.09077 -14.54271 -14.35946 -14.25186 -14.08428 -13.84109 -13.73230 -13.31644 -13.05236 -12.86120 -12.77491 -12.58373 -12.51646 -12.40259 -12.32109 -12.20036 -11.92820 -11.66619 -11.30259 -11.04149 -10.88984 -10.72932 -10.63733 -10.14816 -9.78707 -8.98431 -8.50994 -6.23274 0.58626 0.61615 1.29550 1.34329 1.50744 1.70467 2.09589 2.27291 2.61083 2.78586 2.87368 3.11374 3.12535 3.29980 3.50360 3.71609 3.84090 4.03531 4.05905 4.14816 4.19142 4.23193 4.35267 4.40893 4.46823 4.51778 4.55125 4.58427 4.65430 4.67075 4.70457 4.79282 4.82448 4.84907 4.90617 4.96312 4.98755 5.25492 5.36666 5.38437 5.56410 5.69351 5.74054 5.79207 5.90969 6.10306 6.24776 6.56722 6.83281 7.31212 7.58253 8.60816 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.001988 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.948382 B =14084.201901 C =14387.363287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.374 6.374 3 C 0.080 3.920 4 C 0.103 3.897 5 N -0.715 5.715 6 C 0.513 3.487 7 O -0.579 6.579 8 C -0.080 4.080 9 C -0.137 4.137 10 C -0.059 4.059 11 C -0.194 4.194 12 C 0.117 3.883 13 O -0.246 6.246 14 C -0.399 4.399 15 H 0.079 0.921 16 C 0.008 3.992 17 N -0.923 5.923 18 Si 0.972 3.028 19 H -0.269 1.269 20 H -0.264 1.264 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.065 4.065 24 C -0.176 4.176 25 C 0.047 3.953 26 O -0.394 6.394 27 C 0.058 3.942 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.128 0.872 38 H 0.285 0.715 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -17.739 28.899 34.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.293 6.293 3 C 0.039 3.961 4 C -0.022 4.022 5 N -0.369 5.369 6 C 0.301 3.699 7 O -0.457 6.457 8 C -0.119 4.119 9 C -0.138 4.138 10 C -0.077 4.077 11 C -0.213 4.213 12 C 0.068 3.932 13 O -0.154 6.154 14 C -0.475 4.475 15 H 0.096 0.904 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.189 1.189 21 H -0.186 1.186 22 C -0.258 4.258 23 C -0.083 4.083 24 C -0.214 4.214 25 C -0.029 4.029 26 O -0.314 6.314 27 C -0.019 4.019 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.255 0.745 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.101 0.899 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.187 -16.950 28.668 33.456 hybrid contribution -0.551 0.649 -0.701 1.103 sum 2.636 -16.301 27.968 32.478 Atomic orbital electron populations 1.22988 0.79812 1.04028 1.00811 1.87965 1.21074 1.25423 1.94844 1.23041 0.94803 0.84231 0.94015 1.21827 1.01230 0.96046 0.83076 1.45765 1.55490 1.30720 1.04963 1.21157 0.78400 0.84300 0.86051 1.90762 1.40107 1.27094 1.87759 1.20552 1.04095 1.00086 0.87156 1.19297 0.95519 0.99791 0.99195 1.20942 0.94262 0.98390 0.94088 1.20508 1.01389 0.98523 1.00849 1.19699 0.92915 0.92663 0.87906 1.83518 1.40176 1.51153 1.40557 1.20691 0.93429 1.16412 1.16955 0.90374 1.25310 1.04497 0.94016 0.95231 1.69734 1.38367 1.23430 1.24888 0.85199 0.77865 0.79537 0.77980 1.19363 1.18882 1.18614 1.21251 0.96818 1.05011 1.02685 1.20916 0.99755 0.94200 0.93460 1.23758 1.00350 1.02382 0.94956 1.23751 0.84905 1.02901 0.91336 1.88909 1.40528 1.78688 1.23229 1.23198 0.89445 0.99493 0.89730 0.92600 0.87917 0.94102 0.91272 0.91285 0.74549 0.85524 0.84750 0.82867 0.85411 0.90566 0.87671 0.84968 0.89037 0.87755 0.90947 0.87243 0.89937 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.36 113.37 1.17 1.35 16 2 O -0.37 -4.36 10.12 -148.98 -1.51 -5.87 16 3 C 0.08 0.92 0.65 -9.80 -0.01 0.91 16 4 C 0.10 1.59 3.79 86.38 0.33 1.91 16 5 N -0.72 -10.66 5.09 -463.08 -2.35 -13.02 16 6 C 0.51 11.55 7.82 87.66 0.69 12.24 16 7 O -0.58 -19.80 16.03 -3.04 -0.05 -19.85 16 8 C -0.08 -1.47 5.83 29.10 0.17 -1.30 16 9 C -0.14 -4.16 4.38 -19.84 -0.09 -4.24 16 10 C -0.06 -1.88 9.69 22.25 0.22 -1.66 16 11 C -0.19 -7.81 9.99 22.39 0.22 -7.58 16 12 C 0.12 5.79 6.65 22.58 0.15 5.94 16 13 O -0.25 -14.01 8.59 -22.72 -0.20 -14.21 16 14 C -0.40 -24.41 9.90 67.92 0.67 -23.74 16 15 H 0.08 5.02 5.52 -2.91 -0.02 5.01 16 16 C 0.01 0.45 5.49 84.83 0.47 0.92 16 17 N -0.92 -56.59 13.96 21.61 0.30 -56.29 16 18 Si 0.97 46.90 28.62 68.60 1.96 48.86 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 22 C -0.24 -11.15 9.13 22.39 0.20 -10.94 16 23 C -0.07 -2.38 9.69 22.25 0.22 -2.17 16 24 C -0.18 -1.67 6.26 32.02 0.20 -1.47 16 25 C 0.05 0.48 7.73 72.79 0.56 1.04 16 26 O -0.39 -6.25 11.52 -148.98 -1.72 -7.97 16 27 C 0.06 0.72 6.72 72.36 0.49 1.20 16 28 H 0.06 0.39 6.64 -2.39 -0.02 0.38 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.48 6.19 -2.39 -0.01 0.46 16 31 H 0.07 1.22 6.54 -2.39 -0.02 1.20 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.42 3.84 8.07 -92.71 -0.75 3.09 16 34 H 0.13 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.13 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.11 5.40 5.71 -2.91 -0.02 5.38 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.09 0.88 7.87 -2.39 -0.02 0.87 16 42 H 0.10 0.72 6.45 -2.39 -0.02 0.71 16 43 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.90 7.97 -2.39 -0.02 0.88 16 46 H 0.10 1.18 7.48 -2.39 -0.02 1.16 16 Total: -1.00 -79.98 379.01 2.37 -77.62 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.26 Total: 18.31 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 5.66 Total: -27.59 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -2.05 Total: -69.31 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -3.47 Total: -47.89 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.96 Total: 48.86 kcal Total: -79.98 2.37 -77.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763812184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.693 kcal (2) G-P(sol) polarization free energy of solvation -79.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds