Wall clock time and date at job start Tue Mar 31 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 120.00050 * 2 1 4 4 O 1.21278 * 119.99703 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00129 * 179.97438 * 3 2 1 6 6 O 1.42901 * 109.47338 * 180.02562 * 5 3 2 7 7 C 1.35896 * 116.99712 * 180.02562 * 6 5 3 8 8 C 1.38743 * 120.06255 * 0.02562 * 7 6 5 9 9 C 1.38124 * 119.94816 * 179.97438 * 8 7 6 10 10 C 1.38291 * 120.05091 * 359.75002 * 9 8 7 11 11 C 1.38238 * 120.11192 * 0.50749 * 10 9 8 12 12 C 1.50703 * 119.96810 * 179.77007 * 11 10 9 13 13 C 1.50696 * 109.47225 * 269.71844 * 12 11 10 14 14 O 1.20833 * 119.99595 * 0.02562 * 13 12 11 15 15 O 1.34224 * 120.00302 * 180.02562 * 13 12 11 16 16 C 1.45206 * 117.00077 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46777 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.46997 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47240 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31522 * 120.00243 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46755 * 90.00221 * 23 21 19 25 25 H 1.48494 * 109.47308 * 209.99919 * 23 21 19 26 26 H 1.48496 * 109.47178 * 330.00271 * 23 21 19 27 27 C 1.38164 * 120.05763 * 359.48733 * 11 10 9 28 28 H 1.08992 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47079 * 299.99869 * 1 2 3 30 30 H 1.09003 * 109.46659 * 59.99723 * 1 2 3 31 31 H 0.97002 * 120.00474 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46704 * 60.00399 * 5 3 2 33 33 H 1.09003 * 109.46955 * 300.00592 * 5 3 2 34 34 H 1.08010 * 120.02392 * 359.95928 * 8 7 6 35 35 H 1.08001 * 119.97419 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.93940 * 180.27887 * 10 9 8 37 37 H 1.09009 * 109.46568 * 149.72304 * 12 11 10 38 38 H 1.08995 * 109.47249 * 29.72414 * 12 11 10 39 39 H 1.09000 * 109.47070 * 300.00162 * 16 15 13 40 40 H 1.09001 * 109.46626 * 60.00180 * 16 15 13 41 41 H 1.09000 * 109.47486 * 299.99948 * 17 16 15 42 42 H 1.09001 * 109.47362 * 60.00671 * 17 16 15 43 43 H 1.09000 * 109.46866 * 300.00212 * 18 17 16 44 44 H 1.08996 * 109.47261 * 59.99820 * 18 17 16 45 45 H 0.96992 * 120.00032 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.02918 * 180.23370 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 8 4.1223 2.5145 0.0011 7 6 5.4696 2.6925 0.0011 8 6 6.3159 1.5931 0.0001 9 6 7.6848 1.7767 -0.0004 10 6 8.2121 3.0551 -0.0052 11 6 7.3710 4.1522 0.0012 12 6 7.9492 5.5439 0.0012 13 6 8.1423 6.0076 1.4220 14 8 7.8418 5.2821 2.3403 15 8 8.6481 7.2265 1.6673 16 6 8.8071 7.6062 3.0598 17 6 9.3932 9.0172 3.1398 18 6 9.5613 9.4172 4.6071 19 6 10.1379 10.8072 4.6860 20 1 10.3617 11.3512 3.7802 21 6 10.3788 11.3849 5.9144 22 7 10.1058 10.7226 7.0175 23 14 11.0943 13.1077 6.0123 24 1 9.9908 14.1011 6.0393 25 1 11.9068 13.2368 7.2485 26 1 11.9538 13.3547 4.8269 27 6 6.0010 3.9738 0.0016 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9501 -0.8400 -0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 5.9045 0.5944 0.0000 35 1 8.3440 0.9211 -0.0016 36 1 9.2828 3.1966 -0.0101 37 1 7.2663 6.2209 -0.5123 38 1 8.9102 5.5382 -0.5130 39 1 7.8361 7.5870 3.5547 40 1 9.4803 6.9050 3.5529 41 1 10.3642 9.0360 2.6450 42 1 8.7203 9.7187 2.6465 43 1 8.5904 9.3983 5.1023 44 1 10.2343 8.7157 5.1001 45 1 10.2756 11.1289 7.8817 46 1 5.3443 4.8313 0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772355585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:38 Heat of formation + Delta-G solvation = -146.697125 kcal Electronic energy + Delta-G solvation = -26770.035388 eV Core-core repulsion = 22624.927638 eV Total energy + Delta-G solvation = -4145.107750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87982 -40.28444 -39.62612 -37.82308 -36.33478 -35.15796 -33.96640 -32.99755 -31.66135 -31.16754 -29.35953 -28.41828 -26.83765 -26.32788 -23.49619 -22.87551 -22.18601 -21.15068 -20.51449 -20.22506 -18.47939 -17.86165 -17.44735 -16.88082 -16.63036 -16.53659 -16.43085 -16.05055 -15.76333 -15.67243 -15.20955 -14.60490 -14.45808 -14.31109 -13.96651 -13.58215 -13.54572 -13.13252 -13.06934 -12.83932 -12.62090 -12.48629 -12.16497 -11.95959 -11.83911 -11.76563 -11.44043 -11.24376 -10.95098 -10.64327 -10.60709 -10.39026 -10.34974 -10.33098 -9.75604 -9.69325 -9.50152 -9.16789 -9.10249 -8.48800 -8.36868 -6.01635 -4.04708 0.96362 1.19156 2.02984 2.06947 2.39080 2.90473 3.20063 3.32616 3.38662 3.42172 3.58467 4.04597 4.32749 4.37622 4.45277 4.48266 4.55426 4.66517 4.71987 4.85284 4.96458 5.00924 5.07600 5.16283 5.26017 5.32960 5.34295 5.39508 5.61542 5.66841 5.72690 5.74002 5.96775 6.04875 6.12210 6.28615 6.39424 6.55056 6.56934 6.78035 6.88566 7.01426 7.04847 7.61547 7.62455 7.73592 7.96338 7.98598 8.37972 9.01598 9.59552 11.09792 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.001576 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.136253 B =17758.315364 C =18776.093970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.513 3.487 4 O -0.510 6.510 5 C 0.042 3.958 6 O -0.290 6.290 7 C 0.127 3.873 8 C -0.208 4.208 9 C -0.079 4.079 10 C -0.137 4.137 11 C -0.033 4.033 12 C -0.077 4.077 13 C 0.457 3.543 14 O -0.503 6.503 15 O -0.359 6.359 16 C 0.069 3.931 17 C -0.109 4.109 18 C 0.023 3.977 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.404 0.596 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.732 -27.952 -19.888 36.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.388 5.388 3 C 0.297 3.703 4 O -0.384 6.384 5 C -0.037 4.037 6 O -0.202 6.202 7 C 0.082 3.918 8 C -0.227 4.227 9 C -0.097 4.097 10 C -0.155 4.155 11 C -0.033 4.033 12 C -0.114 4.114 13 C 0.299 3.701 14 O -0.391 6.391 15 O -0.275 6.275 16 C -0.004 4.004 17 C -0.147 4.147 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.147 4.147 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.237 0.763 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.422 -27.182 -19.376 35.978 hybrid contribution 0.640 0.124 0.434 0.783 sum -12.782 -27.058 -18.942 35.416 Atomic orbital electron populations 1.21582 0.78607 1.02559 1.02772 1.45609 1.08133 1.08208 1.76894 1.20136 0.89003 0.84238 0.76879 1.90791 1.69801 1.31028 1.46761 1.22411 0.92463 0.84853 1.03958 1.86155 1.19283 1.25890 1.88914 1.18876 0.81536 0.94245 0.97135 1.21193 0.94570 0.97616 1.09340 1.20870 0.94221 0.97179 0.97389 1.20957 0.99839 0.91981 1.02734 1.19067 0.92397 0.93880 0.97935 1.20320 1.04746 0.94124 0.92234 1.23352 0.74435 0.80252 0.92050 1.90692 1.46512 1.55153 1.46765 1.86487 1.74601 1.33131 1.33314 1.23500 1.01548 0.98630 0.76743 1.21765 1.00045 0.90971 1.01877 1.19058 0.97507 0.96611 0.88207 1.21179 1.42265 1.00177 0.92368 0.92411 1.25030 0.95686 0.97960 0.95778 1.69968 1.48379 1.37512 0.97494 0.86544 0.79130 0.84525 0.77514 1.20619 1.21206 1.19808 1.20252 0.94432 0.95170 1.04839 0.90252 0.91878 0.91939 0.76283 0.88868 0.88800 0.85582 0.85487 0.85615 0.86498 0.86429 0.91521 0.91556 0.92146 0.92124 0.96230 0.96233 0.92911 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 10.70 59.85 0.64 1.00 16 2 N -0.73 -3.28 5.71 -67.08 -0.38 -3.66 16 3 C 0.51 4.38 7.91 -10.98 -0.09 4.30 16 4 O -0.51 -7.08 16.50 -14.35 -0.24 -7.32 16 5 C 0.04 0.28 5.22 36.01 0.19 0.47 16 6 O -0.29 -3.31 9.67 -39.32 -0.38 -3.69 16 7 C 0.13 1.40 6.69 -39.22 -0.26 1.14 16 8 C -0.21 -1.79 9.04 -39.44 -0.36 -2.15 16 9 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 10 C -0.14 -1.35 9.70 -39.56 -0.38 -1.73 16 11 C -0.03 -0.36 4.37 -104.65 -0.46 -0.82 16 12 C -0.08 -0.79 5.94 -29.04 -0.17 -0.96 16 13 C 0.46 6.92 7.95 36.00 0.29 7.21 16 14 O -0.50 -9.26 15.78 -18.76 -0.30 -9.56 16 15 O -0.36 -6.01 10.22 -39.24 -0.40 -6.41 16 16 C 0.07 1.30 5.47 37.16 0.20 1.50 16 17 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 23 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.13 -1.52 9.64 -39.43 -0.38 -1.90 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.40 0.30 8.83 -40.82 -0.36 -0.06 16 32 H 0.09 0.34 7.66 -51.93 -0.40 -0.05 16 33 H 0.09 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.13 0.67 6.30 -52.48 -0.33 0.34 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.96 8.09 -51.92 -0.42 0.54 16 38 H 0.12 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 40 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -38.32 399.87 -8.77 -47.09 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.94 Total: -4.23 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.88 Total: -8.62 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.35 Total: -30.00 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.31 Total: -26.98 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.32 -8.77 -47.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772355585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.608 kcal (2) G-P(sol) polarization free energy of solvation -38.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds