Wall clock time and date at job start Tue Mar 31 2020 18:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 120.00050 * 2 1 4 4 O 1.21278 * 119.99703 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00129 * 179.97438 * 3 2 1 6 6 O 1.42901 * 109.47338 * 180.02562 * 5 3 2 7 7 C 1.35896 * 116.99712 * 180.02562 * 6 5 3 8 8 C 1.38743 * 120.06255 * 0.02562 * 7 6 5 9 9 C 1.38124 * 119.94816 * 179.97438 * 8 7 6 10 10 C 1.38291 * 120.05091 * 359.75002 * 9 8 7 11 11 C 1.38238 * 120.11192 * 0.50749 * 10 9 8 12 12 C 1.50703 * 119.96810 * 179.77007 * 11 10 9 13 13 C 1.50696 * 109.47225 * 269.71844 * 12 11 10 14 14 O 1.20833 * 119.99595 * 0.02562 * 13 12 11 15 15 O 1.34224 * 120.00302 * 180.02562 * 13 12 11 16 16 C 1.45206 * 117.00077 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46777 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.46997 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47240 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31522 * 120.00243 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46755 * 90.00221 * 23 21 19 25 25 H 1.48494 * 109.47308 * 209.99919 * 23 21 19 26 26 H 1.48496 * 109.47178 * 330.00271 * 23 21 19 27 27 C 1.38164 * 120.05763 * 359.48733 * 11 10 9 28 28 H 1.08992 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47079 * 299.99869 * 1 2 3 30 30 H 1.09003 * 109.46659 * 59.99723 * 1 2 3 31 31 H 0.97002 * 120.00474 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46704 * 60.00399 * 5 3 2 33 33 H 1.09003 * 109.46955 * 300.00592 * 5 3 2 34 34 H 1.08010 * 120.02392 * 359.95928 * 8 7 6 35 35 H 1.08001 * 119.97419 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.93940 * 180.27887 * 10 9 8 37 37 H 1.09009 * 109.46568 * 149.72304 * 12 11 10 38 38 H 1.08995 * 109.47249 * 29.72414 * 12 11 10 39 39 H 1.09000 * 109.47070 * 300.00162 * 16 15 13 40 40 H 1.09001 * 109.46626 * 60.00180 * 16 15 13 41 41 H 1.09000 * 109.47486 * 299.99948 * 17 16 15 42 42 H 1.09001 * 109.47362 * 60.00671 * 17 16 15 43 43 H 1.09000 * 109.46866 * 300.00212 * 18 17 16 44 44 H 1.08996 * 109.47261 * 59.99820 * 18 17 16 45 45 H 0.96992 * 120.00032 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.02918 * 180.23370 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 8 4.1223 2.5145 0.0011 7 6 5.4696 2.6925 0.0011 8 6 6.3159 1.5931 0.0001 9 6 7.6848 1.7767 -0.0004 10 6 8.2121 3.0551 -0.0052 11 6 7.3710 4.1522 0.0012 12 6 7.9492 5.5439 0.0012 13 6 8.1423 6.0076 1.4220 14 8 7.8418 5.2821 2.3403 15 8 8.6481 7.2265 1.6673 16 6 8.8071 7.6062 3.0598 17 6 9.3932 9.0172 3.1398 18 6 9.5613 9.4172 4.6071 19 6 10.1379 10.8072 4.6860 20 1 10.3617 11.3512 3.7802 21 6 10.3788 11.3849 5.9144 22 7 10.1058 10.7226 7.0175 23 14 11.0943 13.1077 6.0123 24 1 9.9908 14.1011 6.0393 25 1 11.9068 13.2368 7.2485 26 1 11.9538 13.3547 4.8269 27 6 6.0010 3.9738 0.0016 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9501 -0.8400 -0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 5.9045 0.5944 0.0000 35 1 8.3440 0.9211 -0.0016 36 1 9.2828 3.1966 -0.0101 37 1 7.2663 6.2209 -0.5123 38 1 8.9102 5.5382 -0.5130 39 1 7.8361 7.5870 3.5547 40 1 9.4803 6.9050 3.5529 41 1 10.3642 9.0360 2.6450 42 1 8.7203 9.7187 2.6465 43 1 8.5904 9.3983 5.1023 44 1 10.2343 8.7157 5.1001 45 1 10.2756 11.1289 7.8817 46 1 5.3443 4.8313 0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772355585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:37 Heat of formation + Delta-G solvation = -171.500376 kcal Electronic energy + Delta-G solvation = -26771.110937 eV Core-core repulsion = 22624.927638 eV Total energy + Delta-G solvation = -4146.183300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73107 -41.31402 -40.38427 -38.62644 -37.66468 -35.93128 -35.74253 -33.93478 -33.52171 -31.82361 -29.96189 -29.57177 -28.43568 -26.80971 -25.27459 -23.65086 -23.12320 -22.16767 -21.92878 -21.32204 -19.13711 -18.82812 -18.47762 -18.41952 -17.78625 -17.47165 -17.32085 -17.02897 -16.78912 -16.49160 -16.41310 -15.82053 -15.72136 -15.14141 -14.89066 -14.69434 -14.28923 -14.14557 -14.01788 -13.97530 -13.78537 -13.64346 -13.30167 -13.13562 -12.99405 -12.80468 -12.54428 -12.50704 -12.37151 -12.08153 -12.06748 -11.93078 -11.78747 -11.41776 -11.40896 -11.22577 -11.09157 -10.57570 -10.26224 -9.87095 -9.20642 -8.21857 -6.33726 0.22335 0.46412 1.18434 1.41299 1.41554 1.43261 1.53614 1.54645 1.74297 2.41546 2.65582 2.80280 3.11987 3.53277 3.60167 3.85252 3.87504 3.98378 4.00893 4.06784 4.08407 4.11197 4.21632 4.34661 4.41225 4.43149 4.47627 4.57941 4.59332 4.73542 4.79591 4.87639 4.92584 5.03427 5.07824 5.26965 5.29339 5.43117 5.43577 5.53577 5.56861 5.63086 5.75067 5.79714 6.18738 6.30235 6.47692 6.71860 6.82404 7.11872 7.35957 8.90375 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.001576 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.136253 B =17758.315364 C =18776.093970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.506 3.494 4 O -0.578 6.578 5 C 0.037 3.963 6 O -0.324 6.324 7 C 0.111 3.889 8 C -0.202 4.202 9 C -0.079 4.079 10 C -0.148 4.148 11 C -0.048 4.048 12 C -0.067 4.067 13 C 0.456 3.544 14 O -0.540 6.540 15 O -0.357 6.357 16 C 0.078 3.922 17 C -0.094 4.094 18 C 0.025 3.975 19 C -0.544 4.544 20 H 0.066 0.934 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.158 4.158 28 H 0.119 0.881 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.425 0.575 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.066 0.934 43 H -0.006 1.006 44 H -0.003 1.003 45 H 0.264 0.736 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 -29.710 -21.648 38.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C 0.292 3.708 4 O -0.457 6.457 5 C -0.041 4.041 6 O -0.238 6.238 7 C 0.067 3.933 8 C -0.220 4.220 9 C -0.097 4.097 10 C -0.166 4.166 11 C -0.049 4.049 12 C -0.104 4.104 13 C 0.301 3.699 14 O -0.429 6.429 15 O -0.273 6.273 16 C 0.005 3.995 17 C -0.131 4.131 18 C -0.013 4.013 19 C -0.582 4.582 20 H 0.084 0.916 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.177 4.177 28 H 0.137 0.863 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.263 0.737 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.013 0.987 44 H 0.016 0.984 45 H 0.073 0.927 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.299 -29.012 -21.167 37.960 hybrid contribution 0.211 0.499 0.966 1.107 sum -12.087 -28.513 -20.201 36.976 Atomic orbital electron populations 1.21715 0.78263 1.04669 1.01403 1.45518 1.08469 1.08093 1.74664 1.20644 0.89987 0.84248 0.75896 1.90761 1.71136 1.33478 1.50291 1.22742 0.90994 0.83464 1.06859 1.86108 1.19701 1.28807 1.89169 1.19065 0.81815 0.94742 0.97722 1.21590 0.94413 0.98493 1.07546 1.21310 0.94735 0.97711 0.95943 1.21289 1.00600 0.92329 1.02424 1.19181 0.92228 0.94565 0.98876 1.20478 1.06924 0.94193 0.88816 1.24379 0.72815 0.78976 0.93767 1.90678 1.48032 1.55858 1.48362 1.86481 1.75061 1.34406 1.31381 1.23098 1.00769 0.97401 0.78264 1.21459 1.00896 0.92349 0.98420 1.18948 0.95399 0.95729 0.91185 1.21635 1.42391 1.01234 0.92945 0.91569 1.26023 0.95944 1.02624 0.95314 1.70107 1.49470 1.39644 0.98174 0.85372 0.78513 0.78775 0.77935 1.19812 1.20768 1.18429 1.20390 0.95003 0.95670 1.06604 0.86303 0.93515 0.93178 0.73728 0.85252 0.86113 0.81962 0.82359 0.84096 0.84549 0.83164 0.92455 0.91927 0.91192 0.91519 0.98729 0.98438 0.92703 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.70 127.77 1.37 1.96 16 2 N -0.71 -5.26 5.71 -484.52 -2.77 -8.03 16 3 C 0.51 8.50 7.91 87.66 0.69 9.20 16 4 O -0.58 -17.02 16.50 16.01 0.26 -16.76 16 5 C 0.04 0.44 5.22 71.24 0.37 0.81 16 6 O -0.32 -7.46 9.67 -73.34 -0.71 -8.17 16 7 C 0.11 2.40 6.69 22.51 0.15 2.55 16 8 C -0.20 -2.93 9.04 22.36 0.20 -2.73 16 9 C -0.08 -1.12 10.04 22.26 0.22 -0.90 16 10 C -0.15 -2.63 9.70 22.28 0.22 -2.42 16 11 C -0.05 -1.03 4.37 -19.88 -0.09 -1.12 16 12 C -0.07 -1.29 5.94 29.10 0.17 -1.12 16 13 C 0.46 13.66 7.95 71.23 0.57 14.23 16 14 O -0.54 -20.15 15.78 21.94 0.35 -19.81 16 15 O -0.36 -11.76 10.22 -51.35 -0.52 -12.29 16 16 C 0.08 3.01 5.47 71.98 0.39 3.40 16 17 C -0.09 -3.97 5.53 30.60 0.17 -3.80 16 18 C 0.02 1.32 4.97 29.85 0.15 1.47 16 19 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 20 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 21 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 22 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 23 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 C -0.16 -3.82 9.64 22.37 0.22 -3.60 16 28 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.43 -0.63 8.83 -92.71 -0.82 -1.45 16 32 H 0.13 0.53 7.66 -2.39 -0.02 0.51 16 33 H 0.12 0.73 7.66 -2.39 -0.02 0.71 16 34 H 0.16 1.01 6.30 -2.91 -0.02 0.99 16 35 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.14 2.08 8.09 -2.38 -0.02 2.06 16 38 H 0.15 1.89 8.08 -2.39 -0.02 1.87 16 39 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 40 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 41 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 43 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -87.66 399.87 4.59 -83.07 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.17 Total: 5.46 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 5.50 Total: -12.69 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -2.48 Total: -65.30 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -0.62 Total: -57.03 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -87.66 4.59 -83.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772355585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.433 kcal (2) G-P(sol) polarization free energy of solvation -87.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds