Wall clock time and date at job start Tue Mar 31 2020 19:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42906 * 113.99872 * 2 1 4 4 C 1.53002 * 109.46673 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47479 * 64.99903 * 4 3 2 6 6 C 1.46496 * 119.99930 * 270.00009 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99873 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00208 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99909 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46837 * 89.99940 * 11 9 7 13 13 H 1.48492 * 109.46987 * 209.99702 * 11 9 7 14 14 H 1.48497 * 109.47110 * 330.00327 * 11 9 7 15 15 C 1.34777 * 120.00195 * 89.99263 * 5 4 3 16 16 O 1.21723 * 120.00037 * 0.02562 * 15 5 4 17 17 C 1.46256 * 119.99913 * 180.27926 * 15 5 4 18 18 C 1.34986 * 119.99674 * 179.72989 * 17 15 5 19 19 C 1.47004 * 119.99456 * 179.97438 * 18 17 15 20 20 C 1.39949 * 120.10159 * 359.97438 * 19 18 17 21 21 C 1.37746 * 119.98250 * 180.02562 * 20 19 18 22 22 C 1.38864 * 120.16882 * 0.02562 * 21 20 19 23 23 O 1.35824 * 119.90055 * 179.97438 * 22 21 20 24 24 C 1.42904 * 117.00024 * 0.02562 * 23 22 21 25 25 C 1.39438 * 120.19478 * 359.97438 * 22 21 20 26 26 O 1.35991 * 119.98815 * 179.97438 * 25 22 21 27 27 C 1.38096 * 120.01859 * 359.71484 * 25 22 21 28 28 H 1.09002 * 109.47522 * 60.00261 * 1 2 3 29 29 H 1.09000 * 109.47601 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47380 * 300.00265 * 1 2 3 31 31 H 1.08991 * 109.47511 * 59.99748 * 3 2 1 32 32 H 1.09001 * 109.46642 * 299.99683 * 3 2 1 33 33 H 1.08999 * 109.47707 * 304.99573 * 4 3 2 34 34 H 1.09005 * 109.46685 * 184.99559 * 4 3 2 35 35 H 1.08997 * 109.47346 * 29.99458 * 6 5 4 36 36 H 1.09004 * 109.47612 * 149.99556 * 6 5 4 37 37 H 0.96999 * 119.99756 * 180.02562 * 10 9 7 38 38 H 1.08002 * 120.00313 * 359.72194 * 17 15 5 39 39 H 1.07991 * 120.00539 * 359.97438 * 18 17 15 40 40 H 1.08005 * 120.00754 * 359.97438 * 20 19 18 41 41 H 1.07993 * 119.91810 * 180.02562 * 21 20 19 42 42 H 1.09005 * 109.46648 * 179.97438 * 24 23 22 43 43 H 1.08991 * 109.47291 * 299.99873 * 24 23 22 44 44 H 1.09005 * 109.47083 * 60.00161 * 24 23 22 45 45 H 0.96710 * 114.00014 * 90.00113 * 26 25 22 46 46 H 1.08001 * 120.08500 * 180.30049 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.1062 -0.8926 -1.3402 7 6 5.5016 -1.2982 -0.9410 8 1 6.2202 -0.5461 -0.6502 9 6 5.8613 -2.6293 -0.9479 10 7 4.9867 -3.5449 -1.3034 11 14 7.5912 -3.1319 -0.4538 12 1 7.6346 -3.3841 1.0090 13 1 7.9740 -4.3687 -1.1809 14 1 8.5402 -2.0423 -0.7965 15 6 4.2633 1.3328 -2.3200 16 8 4.1560 2.5430 -2.2457 17 6 4.6979 0.7126 -3.5712 18 6 4.9798 1.4823 -4.6437 19 6 5.4172 0.8590 -5.9011 20 6 5.5427 -0.5321 -5.9884 21 6 5.9532 -1.1136 -7.1677 22 6 6.2440 -0.3228 -8.2715 23 8 6.6489 -0.9018 -9.4315 24 6 6.7525 -2.3271 -9.4436 25 6 6.1214 1.0640 -8.1926 26 8 6.4077 1.8344 -9.2760 27 6 5.7043 1.6548 -7.0162 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8463 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9784 2.1766 0.0901 35 1 3.3857 -1.3632 -0.6712 36 1 3.9138 -1.2124 -2.3643 37 1 5.2396 -4.4813 -1.3079 38 1 4.7936 -0.3612 -3.6371 39 1 4.8839 2.5560 -4.5780 40 1 5.3184 -1.1495 -5.1311 41 1 6.0493 -2.1872 -7.2341 42 1 7.0843 -2.6589 -10.4274 43 1 7.4731 -2.6453 -8.6903 44 1 5.7787 -2.7641 -9.2224 45 1 5.6496 1.9980 -9.8537 46 1 5.6043 2.7284 -6.9553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772835669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:06 Heat of formation + Delta-G solvation = -135.045592 kcal Electronic energy + Delta-G solvation = -28612.135317 eV Core-core repulsion = 24467.532816 eV Total energy + Delta-G solvation = -4144.602501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44565 -40.80253 -38.95900 -38.70170 -37.86893 -36.62407 -34.63636 -34.23535 -31.71058 -31.24310 -30.00109 -28.88253 -28.04370 -27.13055 -25.36393 -24.77452 -23.88081 -23.27349 -21.56463 -19.73428 -19.48131 -18.61426 -18.49626 -18.24476 -17.64241 -17.17210 -17.06591 -16.81238 -16.53570 -16.22835 -16.00044 -15.94696 -15.63038 -15.29170 -15.05673 -14.98985 -14.42109 -14.26755 -13.74689 -13.60912 -13.54336 -13.30750 -13.18147 -13.04017 -12.79517 -12.75217 -12.72089 -12.50790 -12.35507 -12.17909 -12.10720 -11.87456 -11.66028 -11.60950 -10.88853 -10.79595 -10.61488 -10.46807 -9.91743 -9.45714 -8.79775 -8.16215 -6.30675 -0.44603 0.18367 0.95661 1.41175 1.43187 1.52789 2.23187 2.26629 2.38015 2.46889 2.75569 2.95125 3.13444 3.15156 3.63233 3.72375 3.99883 4.09105 4.15247 4.17722 4.25575 4.32431 4.36761 4.39066 4.41490 4.53331 4.55174 4.56466 4.66053 4.71481 4.77944 4.84535 4.88995 4.98199 5.05776 5.08382 5.21252 5.33583 5.37600 5.56911 5.67278 5.70140 5.89943 6.10930 6.20510 6.29296 6.59848 6.84832 6.85584 7.30975 7.42806 8.89020 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009095 B = 0.003427 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.007603 B = 8168.835793 C =10029.662566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.057 3.943 4 C 0.114 3.886 5 N -0.587 5.587 6 C 0.261 3.739 7 C -0.546 4.546 8 H 0.049 0.951 9 C 0.026 3.974 10 N -0.917 5.917 11 Si 0.952 3.048 12 H -0.275 1.275 13 H -0.278 1.278 14 H -0.274 1.274 15 C 0.540 3.460 16 O -0.600 6.600 17 C -0.209 4.209 18 C -0.020 4.020 19 C -0.100 4.100 20 C -0.075 4.075 21 C -0.195 4.195 22 C 0.106 3.894 23 O -0.320 6.320 24 C 0.014 3.986 25 C 0.065 3.935 26 O -0.494 6.494 27 C -0.081 4.081 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.267 0.733 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.153 0.847 42 H 0.124 0.876 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.405 0.595 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 4.767 -12.149 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.021 4.021 4 C -0.009 4.009 5 N -0.315 5.315 6 C 0.140 3.860 7 C -0.585 4.585 8 H 0.067 0.933 9 C -0.175 4.175 10 N -0.556 5.556 11 Si 0.778 3.222 12 H -0.200 1.200 13 H -0.203 1.203 14 H -0.199 1.199 15 C 0.333 3.667 16 O -0.486 6.486 17 C -0.229 4.229 18 C -0.040 4.040 19 C -0.100 4.100 20 C -0.094 4.094 21 C -0.214 4.214 22 C 0.059 3.941 23 O -0.233 6.233 24 C -0.080 4.080 25 C 0.019 3.981 26 O -0.305 6.305 27 C -0.099 4.099 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.142 0.858 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.263 0.737 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.735 5.054 -12.054 13.354 hybrid contribution 0.105 -0.750 0.492 0.903 sum -2.630 4.304 -11.562 12.615 Atomic orbital electron populations 1.22875 0.79980 1.03358 1.00636 1.88005 1.21194 1.28275 1.95482 1.22923 0.93455 0.84769 1.00934 1.21524 0.93047 0.99460 0.86854 1.48050 1.63149 1.09059 1.11214 1.19051 0.95725 0.74127 0.97092 1.21706 0.97924 0.92514 1.46354 0.93264 1.25577 1.00763 0.96255 0.94891 1.70028 1.35955 1.01448 1.48173 0.85645 0.80303 0.77750 0.78521 1.20050 1.20311 1.19877 1.18519 0.77067 0.85981 0.85156 1.90657 1.57715 1.14835 1.85437 1.23093 1.05386 1.01379 0.93061 1.22241 0.91681 0.99878 0.90190 1.18803 1.04469 0.93101 0.93634 1.21452 0.95770 0.94372 0.97764 1.21268 1.06351 1.01239 0.92525 1.19787 0.95794 0.92179 0.86317 1.86072 1.81606 1.24379 1.31230 1.23419 1.02546 0.76623 1.05442 1.17615 1.05096 0.86095 0.89280 1.84854 1.39952 1.69839 1.35897 1.21566 0.96438 1.01266 0.90618 0.93994 0.89268 0.92328 0.89836 0.94136 0.90096 0.88763 0.95377 0.95862 0.92365 0.85258 0.84451 0.85461 0.82991 0.85768 0.92112 0.91470 0.73688 0.82298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.76 9.53 -148.98 -1.42 -16.18 16 3 C 0.06 1.85 6.28 71.98 0.45 2.30 16 4 C 0.11 4.35 5.81 86.38 0.50 4.85 16 5 N -0.59 -26.11 2.42 -831.36 -2.01 -28.12 16 6 C 0.26 13.07 4.70 85.63 0.40 13.47 16 7 C -0.55 -29.28 9.39 25.60 0.24 -29.04 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.03 1.36 5.46 84.66 0.46 1.83 16 10 N -0.92 -50.86 13.29 21.45 0.28 -50.58 16 11 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 C 0.54 23.75 7.60 86.33 0.66 24.41 16 16 O -0.60 -27.31 15.81 -4.42 -0.07 -27.38 16 17 C -0.21 -8.31 8.60 23.61 0.20 -8.10 16 18 C -0.02 -0.67 9.45 23.82 0.23 -0.44 16 19 C -0.10 -2.94 5.87 -20.15 -0.12 -3.06 16 20 C -0.08 -2.26 9.40 22.57 0.21 -2.05 16 21 C -0.20 -5.02 9.01 22.30 0.20 -4.82 16 22 C 0.11 2.67 6.71 22.71 0.15 2.82 16 23 O -0.32 -7.25 10.27 -77.54 -0.80 -8.05 16 24 C 0.01 0.21 9.81 113.37 1.11 1.32 16 25 C 0.06 1.60 6.71 22.53 0.15 1.75 16 26 O -0.49 -10.58 13.28 -79.41 -1.05 -11.64 16 27 C -0.08 -2.01 9.72 22.65 0.22 -1.79 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 3.13 8.07 -2.39 -0.02 3.11 16 34 H 0.09 3.41 7.42 -2.38 -0.02 3.39 16 35 H 0.03 1.53 7.11 -2.39 -0.02 1.51 16 36 H 0.02 1.22 6.08 -2.38 -0.01 1.20 16 37 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.13 5.44 4.21 -2.91 -0.01 5.43 16 39 H 0.14 4.35 7.52 -2.91 -0.02 4.32 16 40 H 0.13 4.18 6.15 -2.91 -0.02 4.16 16 41 H 0.15 3.26 6.27 -2.91 -0.02 3.24 16 42 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.06 0.88 7.65 -2.39 -0.02 0.87 16 44 H 0.07 0.88 7.65 -2.38 -0.02 0.86 16 45 H 0.41 4.68 9.07 -74.05 -0.67 4.01 16 46 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -69.50 391.21 3.62 -65.88 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.34 Total: 26.22 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 6.32 Total: 5.40 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.73 Total: -78.70 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -3.34 Total: -63.24 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.50 3.62 -65.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772835669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.165 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds