Wall clock time and date at job start Tue Mar 31 2020 19:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00429 * 2 1 4 4 O 1.20832 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00317 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.46456 * 328.99016 * 5 3 2 7 7 C 1.53038 * 109.45375 * 88.96932 * 5 3 2 8 8 H 1.08998 * 109.50525 * 59.24231 * 7 5 3 9 9 O 1.42905 * 109.50004 * 299.12993 * 7 5 3 10 10 C 1.53117 * 109.28158 * 179.19244 * 7 5 3 11 11 C 1.53127 * 109.15744 * 302.34335 * 10 7 5 12 12 C 1.53040 * 109.27800 * 57.64960 * 11 10 7 13 13 N 1.46841 * 109.52519 * 300.82427 * 12 11 10 14 14 C 1.46903 * 110.99954 * 185.83904 * 13 12 11 15 15 C 1.50696 * 109.47114 * 51.67887 * 14 13 12 16 16 C 1.38307 * 119.93259 * 90.00290 * 15 14 13 17 17 C 1.38093 * 120.07027 * 180.02562 * 16 15 14 18 18 C 1.38878 * 119.93266 * 359.97438 * 17 16 15 19 19 O 1.35761 * 120.06960 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99673 * 5.42780 * 19 18 17 21 21 H 1.07997 * 120.00252 * 354.90525 * 20 19 18 22 22 C 1.38653 * 119.99395 * 174.90512 * 20 19 18 23 23 N 1.31553 * 120.00161 * 0.27741 * 22 20 19 24 24 Si 1.86799 * 119.99528 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47504 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46986 * 120.00500 * 24 22 20 27 27 H 1.48500 * 109.47327 * 240.00182 * 24 22 20 28 28 C 1.38874 * 119.86380 * 0.26117 * 18 17 16 29 29 C 1.38105 * 119.92657 * 359.48482 * 28 18 17 30 30 H 1.09000 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46992 * 299.99836 * 1 2 3 32 32 H 1.08998 * 109.46962 * 59.99949 * 1 2 3 33 33 H 0.96698 * 114.00091 * 180.02562 * 9 7 5 34 34 H 1.08995 * 109.52097 * 62.24068 * 10 7 5 35 35 H 1.08999 * 109.52292 * 182.37813 * 10 7 5 36 36 H 1.08992 * 109.50133 * 177.59428 * 11 10 7 37 37 H 1.09005 * 109.49983 * 297.71478 * 11 10 7 38 38 H 1.08999 * 109.46172 * 180.80224 * 12 11 10 39 39 H 1.09006 * 109.45788 * 60.84315 * 12 11 10 40 40 H 1.09005 * 109.47040 * 291.68244 * 14 13 12 41 41 H 1.09000 * 109.47445 * 171.68163 * 14 13 12 42 42 H 1.07995 * 119.95958 * 359.97438 * 16 15 14 43 43 H 1.08006 * 120.03417 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00405 * 359.72090 * 23 22 20 45 45 H 1.08002 * 120.04158 * 179.72336 * 28 18 17 46 46 H 1.07999 * 119.96317 * 180.22847 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9749 0.4143 0.5304 7 6 4.0773 1.2752 -1.4420 8 1 3.6581 2.1278 -1.9763 9 8 3.6809 0.0641 -2.0888 10 6 5.6051 1.3757 -1.4372 11 6 6.0229 2.6454 -0.6900 12 6 5.4555 2.6053 0.7308 13 7 3.9914 2.5097 0.6720 14 6 3.4031 2.6082 2.0145 15 6 3.9395 3.8331 2.7093 16 6 3.2802 5.0423 2.5834 17 6 3.7696 6.1667 3.2185 18 6 4.9248 6.0822 3.9847 19 8 5.4086 7.1859 4.6099 20 6 4.6614 8.3060 4.5397 21 1 3.7661 8.3210 3.9360 22 6 5.0426 9.4386 5.2429 23 7 6.1361 9.4220 5.9740 24 14 4.0078 10.9907 5.1452 25 1 2.8412 10.7529 4.2578 26 1 3.5300 11.3534 6.5037 27 1 4.8293 12.0997 4.5970 28 6 5.5873 4.8676 4.1053 29 6 5.0900 3.7456 3.4719 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.9718 -0.0040 -3.0085 34 1 6.0259 0.5036 -0.9369 35 1 5.9705 1.4189 -2.4632 36 1 7.1105 2.7005 -0.6461 37 1 5.6343 3.5196 -1.2125 38 1 5.7391 3.5144 1.2609 39 1 5.8553 1.7385 1.2571 40 1 3.6628 1.7204 2.5911 41 1 2.3188 2.6831 1.9315 42 1 2.3822 5.1074 1.9871 43 1 3.2545 7.1108 3.1195 44 1 6.6737 8.6161 6.0245 45 1 6.4884 4.7997 4.6967 46 1 5.6027 2.8000 3.5683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781957248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:56 Heat of formation + Delta-G solvation = -129.345050 kcal Electronic energy + Delta-G solvation = -29442.560160 eV Core-core repulsion = 25298.204852 eV Total energy + Delta-G solvation = -4144.355307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05096 -39.45023 -38.86109 -37.27030 -36.53075 -35.95339 -33.31472 -32.27496 -31.06677 -30.28066 -29.21977 -27.94702 -26.15370 -24.85310 -24.12559 -22.99274 -21.94893 -21.17510 -20.50793 -19.94129 -18.38827 -17.99854 -17.58603 -16.93430 -16.89787 -16.53728 -15.48588 -15.33347 -15.06407 -14.67475 -14.49294 -14.22833 -14.03327 -13.95652 -13.71242 -13.52843 -13.38138 -13.31601 -13.18058 -13.02708 -12.65303 -12.39161 -12.14434 -11.82787 -11.37636 -11.25778 -11.11689 -11.06226 -10.94109 -10.83134 -10.76282 -10.64734 -10.48416 -10.33298 -10.26668 -10.06751 -9.40939 -8.78110 -8.47076 -8.23397 -7.26798 -6.78507 -4.07557 2.05061 2.11621 2.18065 2.45423 3.24122 3.29977 3.41429 3.42032 4.10399 4.18530 4.35665 4.41787 4.58833 4.68347 4.78260 4.84555 4.92651 4.99382 5.00653 5.04501 5.16859 5.20512 5.25608 5.31879 5.32797 5.41421 5.52832 5.56870 5.67650 5.69093 5.76544 5.86270 6.01270 6.09384 6.14575 6.23012 6.36169 6.59898 6.78369 6.82305 6.88018 7.05927 7.22414 7.24548 7.35347 7.57170 7.68822 7.71450 8.38785 8.90398 9.58998 10.65545 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.002628 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.740165 B =10651.503722 C =11356.065478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.486 6.486 5 C 0.104 3.896 6 H 0.076 0.924 7 C 0.118 3.882 8 H 0.073 0.927 9 O -0.562 6.562 10 C -0.149 4.149 11 C -0.119 4.119 12 C 0.051 3.949 13 N -0.511 5.511 14 C 0.106 3.894 15 C -0.182 4.182 16 C -0.043 4.043 17 C -0.231 4.231 18 C 0.160 3.840 19 O -0.202 6.202 20 C -0.471 4.471 21 H 0.085 0.915 22 C 0.010 3.990 23 N -0.882 5.882 24 Si 1.101 2.899 25 H -0.283 1.283 26 H -0.279 1.279 27 H -0.279 1.279 28 C -0.197 4.197 29 C -0.068 4.068 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.383 0.617 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.282 0.718 45 H 0.115 0.885 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -19.439 -15.031 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.312 3.688 4 O -0.371 6.371 5 C -0.006 4.006 6 H 0.094 0.906 7 C 0.059 3.941 8 H 0.091 0.909 9 O -0.368 6.368 10 C -0.186 4.186 11 C -0.156 4.156 12 C -0.076 4.076 13 N -0.239 5.239 14 C -0.020 4.020 15 C -0.183 4.183 16 C -0.062 4.062 17 C -0.250 4.250 18 C 0.107 3.893 19 O -0.106 6.106 20 C -0.547 4.547 21 H 0.103 0.897 22 C -0.195 4.195 23 N -0.514 5.514 24 Si 0.926 3.074 25 H -0.208 1.208 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.216 4.216 29 C -0.087 4.087 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.093 0.907 45 H 0.133 0.867 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.177 -17.224 -14.029 22.810 hybrid contribution 0.326 -2.138 -0.695 2.272 sum -4.850 -19.362 -14.725 24.804 Atomic orbital electron populations 1.23245 0.76546 1.03518 1.02496 1.86535 1.23090 1.33235 1.83918 1.23289 0.91381 0.81493 0.72679 1.90690 1.66618 1.36134 1.43676 1.20999 0.88219 0.94633 0.96722 0.90584 1.21586 0.94046 0.87566 0.90913 0.90901 1.86516 1.80236 1.39879 1.30159 1.22312 0.95010 0.99591 1.01736 1.21603 1.00717 0.97725 0.95601 1.22318 0.85441 1.02760 0.97074 1.61778 1.09667 1.32149 1.20257 1.20991 0.99782 0.95369 0.85821 1.18955 0.99383 0.94539 1.05404 1.20638 0.98027 0.91525 0.96039 1.21188 0.99891 0.99617 1.04354 1.19250 0.91624 0.87299 0.91142 1.83662 1.45442 1.16737 1.64762 1.22298 1.09617 0.88987 1.33790 0.89705 1.26542 0.98920 1.00943 0.93126 1.70515 1.13074 1.32239 1.35592 0.83003 0.74305 0.73192 0.76940 1.20830 1.20503 1.20481 1.20128 1.03142 0.90900 1.07422 1.20487 0.95109 0.96780 0.96294 0.88205 0.91939 0.91978 0.76932 0.90960 0.90862 0.90592 0.90497 0.87927 0.94639 0.94838 0.89743 0.87091 0.85422 0.90748 0.86713 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.29 10.56 -39.25 -0.41 -4.70 16 3 C 0.47 6.40 5.80 36.00 0.21 6.61 16 4 O -0.49 -7.84 14.90 -18.76 -0.28 -8.12 16 5 C 0.10 1.26 2.08 -68.87 -0.14 1.12 16 6 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 7 C 0.12 1.17 3.04 -26.65 -0.08 1.09 16 8 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 9 O -0.56 -5.03 12.97 -35.23 -0.46 -5.49 16 10 C -0.15 -1.19 5.63 -26.60 -0.15 -1.34 16 11 C -0.12 -1.14 6.09 -26.64 -0.16 -1.30 16 12 C 0.05 0.61 4.77 -3.84 -0.02 0.59 16 13 N -0.51 -6.88 4.36 -229.52 -1.00 -7.88 16 14 C 0.11 1.57 4.74 -4.98 -0.02 1.55 16 15 C -0.18 -3.13 4.38 -104.58 -0.46 -3.59 16 16 C -0.04 -0.84 9.69 -39.61 -0.38 -1.22 16 17 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 18 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 19 O -0.20 -5.68 9.16 0.01 0.00 -5.68 16 20 C -0.47 -13.29 9.49 30.89 0.29 -13.00 16 21 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 22 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 23 N -0.88 -26.35 13.70 55.48 0.76 -25.59 16 24 Si 1.10 23.95 29.92 -169.99 -5.09 18.86 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 28 C -0.20 -4.03 9.99 -39.39 -0.39 -4.42 16 29 C -0.07 -1.17 7.72 -39.61 -0.31 -1.47 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.38 1.67 9.08 45.56 0.41 2.08 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.45 5.59 -51.93 -0.29 1.16 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 41 H 0.08 1.35 6.05 -51.93 -0.31 1.03 16 42 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 44 H 0.28 8.61 7.97 -40.82 -0.33 8.28 16 45 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.11 1.55 8.04 -52.49 -0.42 1.12 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -33.37 375.35 -7.88 -41.26 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.80 Total: 7.41 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.27 Total: -15.72 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: -0.24 Total: -33.48 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -1.15 Total: -23.98 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.09 Total: 18.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.37 -7.88 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781957248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.090 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds