Wall clock time and date at job start Tue Mar 31 2020 19:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00429 * 2 1 4 4 O 1.20832 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00317 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.46456 * 328.99016 * 5 3 2 7 7 C 1.53038 * 109.45375 * 88.96932 * 5 3 2 8 8 H 1.08998 * 109.50525 * 59.24231 * 7 5 3 9 9 O 1.42905 * 109.50004 * 299.12993 * 7 5 3 10 10 C 1.53117 * 109.28158 * 179.19244 * 7 5 3 11 11 C 1.53127 * 109.15744 * 302.34335 * 10 7 5 12 12 C 1.53040 * 109.27800 * 57.64960 * 11 10 7 13 13 N 1.46841 * 109.52519 * 300.82427 * 12 11 10 14 14 C 1.46903 * 110.99954 * 185.83904 * 13 12 11 15 15 C 1.50696 * 109.47114 * 51.67887 * 14 13 12 16 16 C 1.38307 * 119.93259 * 90.00290 * 15 14 13 17 17 C 1.38093 * 120.07027 * 180.02562 * 16 15 14 18 18 C 1.38878 * 119.93266 * 359.97438 * 17 16 15 19 19 O 1.35761 * 120.06960 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99673 * 5.42780 * 19 18 17 21 21 H 1.07997 * 120.00252 * 354.90525 * 20 19 18 22 22 C 1.38653 * 119.99395 * 174.90512 * 20 19 18 23 23 N 1.31553 * 120.00161 * 0.27741 * 22 20 19 24 24 Si 1.86799 * 119.99528 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47504 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46986 * 120.00500 * 24 22 20 27 27 H 1.48500 * 109.47327 * 240.00182 * 24 22 20 28 28 C 1.38874 * 119.86380 * 0.26117 * 18 17 16 29 29 C 1.38105 * 119.92657 * 359.48482 * 28 18 17 30 30 H 1.09000 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46992 * 299.99836 * 1 2 3 32 32 H 1.08998 * 109.46962 * 59.99949 * 1 2 3 33 33 H 0.96698 * 114.00091 * 180.02562 * 9 7 5 34 34 H 1.08995 * 109.52097 * 62.24068 * 10 7 5 35 35 H 1.08999 * 109.52292 * 182.37813 * 10 7 5 36 36 H 1.08992 * 109.50133 * 177.59428 * 11 10 7 37 37 H 1.09005 * 109.49983 * 297.71478 * 11 10 7 38 38 H 1.08999 * 109.46172 * 180.80224 * 12 11 10 39 39 H 1.09006 * 109.45788 * 60.84315 * 12 11 10 40 40 H 1.09005 * 109.47040 * 291.68244 * 14 13 12 41 41 H 1.09000 * 109.47445 * 171.68163 * 14 13 12 42 42 H 1.07995 * 119.95958 * 359.97438 * 16 15 14 43 43 H 1.08006 * 120.03417 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00405 * 359.72090 * 23 22 20 45 45 H 1.08002 * 120.04158 * 179.72336 * 28 18 17 46 46 H 1.07999 * 119.96317 * 180.22847 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9749 0.4143 0.5304 7 6 4.0773 1.2752 -1.4420 8 1 3.6581 2.1278 -1.9763 9 8 3.6809 0.0641 -2.0888 10 6 5.6051 1.3757 -1.4372 11 6 6.0229 2.6454 -0.6900 12 6 5.4555 2.6053 0.7308 13 7 3.9914 2.5097 0.6720 14 6 3.4031 2.6082 2.0145 15 6 3.9395 3.8331 2.7093 16 6 3.2802 5.0423 2.5834 17 6 3.7696 6.1667 3.2185 18 6 4.9248 6.0822 3.9847 19 8 5.4086 7.1859 4.6099 20 6 4.6614 8.3060 4.5397 21 1 3.7661 8.3210 3.9360 22 6 5.0426 9.4386 5.2429 23 7 6.1361 9.4220 5.9740 24 14 4.0078 10.9907 5.1452 25 1 2.8412 10.7529 4.2578 26 1 3.5300 11.3534 6.5037 27 1 4.8293 12.0997 4.5970 28 6 5.5873 4.8676 4.1053 29 6 5.0900 3.7456 3.4719 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.9718 -0.0040 -3.0085 34 1 6.0259 0.5036 -0.9369 35 1 5.9705 1.4189 -2.4632 36 1 7.1105 2.7005 -0.6461 37 1 5.6343 3.5196 -1.2125 38 1 5.7391 3.5144 1.2609 39 1 5.8553 1.7385 1.2571 40 1 3.6628 1.7204 2.5911 41 1 2.3188 2.6831 1.9315 42 1 2.3822 5.1074 1.9871 43 1 3.2545 7.1108 3.1195 44 1 6.6737 8.6161 6.0245 45 1 6.4884 4.7997 4.6967 46 1 5.6027 2.8000 3.5683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781957248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:55 Heat of formation + Delta-G solvation = -153.506314 kcal Electronic energy + Delta-G solvation = -29443.607871 eV Core-core repulsion = 25298.204852 eV Total energy + Delta-G solvation = -4145.403018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04615 -40.98194 -40.02391 -38.65771 -37.59469 -37.02312 -34.55087 -33.98452 -32.17283 -31.91811 -30.48720 -28.72366 -27.53628 -26.63259 -25.07696 -24.16124 -23.55992 -22.09492 -22.01037 -20.84799 -20.26164 -18.92028 -18.75431 -18.35697 -17.85490 -17.56022 -17.05070 -16.60788 -16.10603 -15.76746 -15.72984 -15.59480 -15.49000 -15.38689 -14.92957 -14.89516 -14.81257 -14.34444 -14.27039 -14.09818 -13.86467 -13.26160 -13.14841 -12.97243 -12.86176 -12.75636 -12.43541 -12.41951 -12.09840 -12.02815 -11.93475 -11.91695 -11.76749 -11.67708 -11.35181 -11.27689 -10.87358 -10.76069 -9.86342 -9.50458 -9.01980 -8.94601 -6.25763 0.49062 0.53459 1.05824 1.47636 1.55631 1.61196 1.75272 2.33355 2.44085 2.86924 3.11268 3.31041 3.39851 3.59591 3.62434 3.82998 3.87612 3.93441 3.99583 4.07150 4.08918 4.25990 4.27716 4.28196 4.29728 4.48226 4.51737 4.54857 4.61161 4.67007 4.72705 4.82578 4.83222 4.93912 5.04099 5.13134 5.17582 5.22359 5.30248 5.35401 5.45702 5.67761 5.70218 5.79693 5.93174 6.01247 6.27034 6.68840 6.81914 6.84605 7.59887 8.49433 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.002628 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.740165 B =10651.503722 C =11356.065478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.520 6.520 5 C 0.103 3.897 6 H 0.089 0.911 7 C 0.124 3.876 8 H 0.059 0.941 9 O -0.572 6.572 10 C -0.138 4.138 11 C -0.117 4.117 12 C 0.048 3.952 13 N -0.524 5.524 14 C 0.110 3.890 15 C -0.152 4.152 16 C -0.049 4.049 17 C -0.240 4.240 18 C 0.122 3.878 19 O -0.249 6.249 20 C -0.487 4.487 21 H 0.088 0.912 22 C -0.042 4.042 23 N -0.917 5.917 24 Si 1.148 2.852 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.268 1.268 28 C -0.198 4.198 29 C -0.051 4.051 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.403 0.597 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.262 0.738 45 H 0.121 0.879 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 -22.586 -16.983 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.312 3.688 4 O -0.408 6.408 5 C -0.007 4.007 6 H 0.107 0.893 7 C 0.065 3.935 8 H 0.077 0.923 9 O -0.381 6.381 10 C -0.175 4.175 11 C -0.155 4.155 12 C -0.078 4.078 13 N -0.252 5.252 14 C -0.016 4.016 15 C -0.153 4.153 16 C -0.068 4.068 17 C -0.260 4.260 18 C 0.072 3.928 19 O -0.157 6.157 20 C -0.563 4.563 21 H 0.106 0.894 22 C -0.239 4.239 23 N -0.552 5.552 24 Si 0.964 3.036 25 H -0.187 1.187 26 H -0.194 1.194 27 H -0.193 1.193 28 C -0.217 4.217 29 C -0.069 4.069 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.254 0.746 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.070 0.930 45 H 0.139 0.861 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.620 -20.452 -16.036 26.590 hybrid contribution 0.345 -1.600 -0.303 1.665 sum -5.275 -22.052 -16.338 27.948 Atomic orbital electron populations 1.23528 0.74944 1.05656 1.02302 1.86526 1.24732 1.32468 1.83393 1.23660 0.92058 0.81370 0.71682 1.90677 1.67464 1.37223 1.45446 1.21119 0.87311 0.94062 0.98207 0.89319 1.21450 0.95146 0.87507 0.89428 0.92295 1.86470 1.80592 1.39099 1.31890 1.22250 0.93367 0.98818 1.03102 1.21593 1.01534 0.98184 0.94151 1.22359 0.84532 1.02219 0.98718 1.61652 1.10654 1.33704 1.19190 1.20903 0.99208 0.94548 0.86963 1.19344 0.98065 0.94736 1.03114 1.20810 0.98662 0.91425 0.95865 1.21203 0.99685 1.00180 1.04898 1.19801 0.93146 0.87691 0.92151 1.83643 1.46836 1.17761 1.67422 1.22615 1.09903 0.89755 1.33984 0.89442 1.28324 0.99229 1.04163 0.92154 1.70652 1.14762 1.31246 1.38496 0.82511 0.73557 0.69615 0.77877 1.18688 1.19400 1.19331 1.20433 1.03165 0.90601 1.07483 1.20868 0.94562 0.97270 0.94220 0.84932 0.92235 0.92146 0.74567 0.90004 0.88426 0.88947 0.91881 0.90436 0.92753 0.92525 0.90811 0.85908 0.86919 0.92973 0.86084 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -7.83 10.56 -51.39 -0.54 -8.37 16 3 C 0.47 11.86 5.80 71.24 0.41 12.27 16 4 O -0.52 -16.26 14.90 21.95 0.33 -15.93 16 5 C 0.10 2.18 2.08 44.19 0.09 2.27 16 6 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 7 C 0.12 2.08 3.04 30.65 0.09 2.18 16 8 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 9 O -0.57 -8.30 12.97 -148.98 -1.93 -10.24 16 10 C -0.14 -1.66 5.63 30.68 0.17 -1.49 16 11 C -0.12 -1.89 6.09 30.65 0.19 -1.70 16 12 C 0.05 1.00 4.77 86.33 0.41 1.42 16 13 N -0.52 -12.74 4.36 -880.06 -3.83 -16.57 16 14 C 0.11 2.95 4.74 85.56 0.41 3.35 16 15 C -0.15 -4.91 4.38 -19.83 -0.09 -5.00 16 16 C -0.05 -1.86 9.69 22.25 0.22 -1.65 16 17 C -0.24 -11.02 9.17 22.39 0.21 -10.81 16 18 C 0.12 6.08 6.65 22.58 0.15 6.23 16 19 O -0.25 -14.87 9.16 -22.87 -0.21 -15.08 16 20 C -0.49 -28.94 9.49 67.92 0.64 -28.29 16 21 H 0.09 4.94 5.20 -2.91 -0.02 4.93 16 22 C -0.04 -2.46 5.49 84.83 0.47 -1.99 16 23 N -0.92 -57.62 13.70 21.61 0.30 -57.32 16 24 Si 1.15 49.22 29.92 68.60 2.05 51.27 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 C -0.20 -8.06 9.99 22.39 0.22 -7.83 16 29 C -0.05 -1.62 7.72 22.25 0.17 -1.45 16 30 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 32 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 33 H 0.40 2.07 9.08 -74.06 -0.67 1.40 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.08 2.00 5.59 -2.39 -0.01 1.99 16 39 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.06 1.29 8.08 -2.38 -0.02 1.27 16 41 H 0.07 2.20 6.05 -2.39 -0.01 2.19 16 42 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.11 5.41 5.64 -2.91 -0.02 5.40 16 44 H 0.26 17.07 7.97 -92.71 -0.74 16.33 16 45 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 46 H 0.15 3.60 8.04 -2.91 -0.02 3.58 16 Total: -1.00 -77.60 375.35 1.48 -76.12 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.37 Total: 26.95 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 4.96 Total: -30.84 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -3.54 Total: -73.89 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -2.36 Total: -49.62 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Total: -77.60 1.48 -76.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781957248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.387 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds