Wall clock time and date at job start Tue Mar 31 2020 19:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99680 * 2 1 4 4 O 1.20830 * 120.00447 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00071 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.46106 * 332.71720 * 5 3 2 7 7 C 1.53031 * 109.46450 * 92.68818 * 5 3 2 8 8 H 1.09002 * 109.50668 * 299.13794 * 7 5 3 9 9 O 1.42905 * 109.50467 * 59.21296 * 7 5 3 10 10 C 1.53119 * 109.28122 * 179.19783 * 7 5 3 11 11 C 1.53124 * 109.15816 * 302.34383 * 10 7 5 12 12 C 1.53040 * 109.27703 * 57.65383 * 11 10 7 13 13 N 1.46846 * 109.46155 * 212.73835 * 5 3 2 14 14 C 1.46902 * 111.00078 * 54.14486 * 13 5 3 15 15 C 1.50694 * 109.47420 * 176.21072 * 14 13 5 16 16 C 1.38295 * 119.93270 * 89.99797 * 15 14 13 17 17 C 1.38098 * 120.06890 * 180.02562 * 16 15 14 18 18 C 1.38878 * 119.93422 * 359.97438 * 17 16 15 19 19 O 1.35746 * 120.07204 * 180.02562 * 18 17 16 20 20 C 1.34834 * 117.00082 * 3.07413 * 19 18 17 21 21 H 1.07998 * 119.99810 * 354.83499 * 20 19 18 22 22 C 1.38653 * 120.00050 * 174.54987 * 20 19 18 23 23 N 1.31559 * 119.99712 * 180.27850 * 22 20 19 24 24 Si 1.86799 * 120.00187 * 0.28180 * 22 20 19 25 25 H 1.48497 * 109.47116 * 89.99649 * 24 22 20 26 26 H 1.48497 * 109.47062 * 209.99715 * 24 22 20 27 27 H 1.48504 * 109.46843 * 329.99817 * 24 22 20 28 28 C 1.38878 * 119.86106 * 0.27538 * 18 17 16 29 29 C 1.38105 * 119.92690 * 359.47491 * 28 18 17 30 30 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47263 * 300.00058 * 1 2 3 32 32 H 1.09004 * 109.47036 * 60.00327 * 1 2 3 33 33 H 0.96707 * 113.99797 * 180.02562 * 9 7 5 34 34 H 1.08996 * 109.51961 * 62.24639 * 10 7 5 35 35 H 1.08998 * 109.52181 * 182.37792 * 10 7 5 36 36 H 1.09001 * 109.50335 * 177.59206 * 11 10 7 37 37 H 1.08995 * 109.50043 * 297.67362 * 11 10 7 38 38 H 1.08997 * 109.46080 * 180.80485 * 12 11 10 39 39 H 1.08996 * 109.46121 * 60.83765 * 12 11 10 40 40 H 1.09001 * 109.46919 * 56.20913 * 14 13 5 41 41 H 1.09002 * 109.47274 * 296.21153 * 14 13 5 42 42 H 1.08001 * 119.96611 * 359.97438 * 16 15 14 43 43 H 1.08002 * 120.03376 * 179.97438 * 17 16 15 44 44 H 0.96999 * 119.99491 * 180.02562 * 23 22 20 45 45 H 1.07993 * 120.03759 * 179.72150 * 28 18 17 46 46 H 1.08005 * 119.96563 * 180.27915 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9770 0.3818 0.4701 7 6 4.0714 1.3696 -1.4420 8 1 3.7670 0.4800 -1.9935 9 8 3.5185 2.5301 -2.0662 10 6 5.5993 1.4698 -1.4368 11 6 6.0202 2.6880 -0.6101 12 6 5.4586 2.5552 0.8073 13 7 3.9941 2.4635 0.7483 14 6 3.4113 2.4742 2.0967 15 6 3.9446 3.6556 2.8652 16 6 3.2788 4.8669 2.8183 17 6 3.7654 5.9515 3.5211 18 6 4.9243 5.8250 4.2758 19 8 5.4048 6.8892 4.9681 20 6 4.6754 8.0227 4.9323 21 1 3.7989 8.0811 4.3040 22 6 5.0471 9.1111 5.7066 23 7 4.3322 10.2151 5.6758 24 14 6.5630 9.0100 6.7934 25 1 7.7520 9.4636 6.0280 26 1 6.3784 9.8800 7.9826 27 1 6.7638 7.6060 7.2336 28 6 5.5935 4.6088 4.3167 29 6 5.0990 3.5264 3.6158 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.7964 2.6531 -2.9842 34 1 6.0220 0.5668 -0.9962 35 1 5.9606 1.5798 -2.4593 36 1 7.1081 2.7403 -0.5670 37 1 5.6303 3.5943 -1.0732 38 1 5.7445 3.4278 1.3945 39 1 5.8603 1.6560 1.2743 40 1 3.6780 1.5532 2.6150 41 1 2.3263 2.5485 2.0230 42 1 2.3778 4.9648 2.2309 43 1 3.2452 6.8973 3.4838 44 1 4.5926 10.9766 6.2172 45 1 6.4975 4.5085 4.8990 46 1 5.6165 2.5790 3.6508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781957252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:00 Heat of formation + Delta-G solvation = -117.634898 kcal Electronic energy + Delta-G solvation = -29602.784927 eV Core-core repulsion = 25458.937410 eV Total energy + Delta-G solvation = -4143.847517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01757 -39.45894 -38.89516 -37.14899 -36.46745 -35.68115 -33.09065 -32.35313 -31.24114 -30.27352 -29.40004 -27.97649 -26.36439 -24.98314 -24.13379 -22.95839 -21.98768 -21.20150 -20.30739 -19.83641 -17.88771 -17.82706 -17.26801 -17.15293 -16.84425 -16.58801 -15.66824 -15.30024 -15.08099 -14.72557 -14.45860 -14.15547 -13.91422 -13.90158 -13.68811 -13.51912 -13.39242 -13.26346 -12.72281 -12.54679 -12.52412 -12.30284 -12.18998 -11.99112 -11.93651 -11.59658 -11.18754 -11.09442 -10.91929 -10.78750 -10.74414 -10.64423 -10.56235 -10.30067 -10.13266 -9.94774 -9.35171 -8.85601 -8.31952 -8.20515 -7.28627 -6.39988 -4.06537 2.08270 2.15621 2.20735 2.43235 3.23360 3.25916 3.40557 3.76269 3.89991 4.24596 4.44709 4.45369 4.57867 4.68013 4.77633 4.85805 4.90298 4.91402 4.99107 5.03262 5.12585 5.18825 5.27485 5.31112 5.31722 5.45104 5.50160 5.58618 5.69039 5.71840 5.78904 5.89719 6.09625 6.17875 6.21590 6.23552 6.37999 6.58881 6.81802 6.89366 6.97229 7.09845 7.29200 7.38380 7.47575 7.63384 7.74629 7.83336 8.05678 8.95124 9.57422 10.67664 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.002740 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.095756 B =10216.623889 C =10823.445848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.462 3.538 4 O -0.464 6.464 5 C 0.106 3.894 6 H 0.079 0.921 7 C 0.120 3.880 8 H 0.063 0.937 9 O -0.537 6.537 10 C -0.151 4.151 11 C -0.116 4.116 12 C 0.055 3.945 13 N -0.501 5.501 14 C 0.103 3.897 15 C -0.173 4.173 16 C -0.044 4.044 17 C -0.222 4.222 18 C 0.163 3.837 19 O -0.217 6.217 20 C -0.389 4.389 21 H 0.107 0.893 22 C 0.063 3.937 23 N -0.879 5.879 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.194 4.194 29 C -0.071 4.071 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.373 0.627 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.116 0.884 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -23.027 -14.375 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.347 6.347 5 C -0.004 4.004 6 H 0.097 0.903 7 C 0.060 3.940 8 H 0.081 0.919 9 O -0.341 6.341 10 C -0.189 4.189 11 C -0.154 4.154 12 C -0.072 4.072 13 N -0.227 5.227 14 C -0.023 4.023 15 C -0.174 4.174 16 C -0.063 4.063 17 C -0.241 4.241 18 C 0.110 3.890 19 O -0.122 6.122 20 C -0.464 4.464 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.517 5.517 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.214 4.214 29 C -0.090 4.090 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.219 0.781 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.151 0.849 44 H 0.089 0.911 45 H 0.134 0.866 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.776 -21.964 -13.801 25.952 hybrid contribution 0.795 -0.576 0.319 1.032 sum 0.020 -22.540 -13.482 26.265 Atomic orbital electron populations 1.23235 0.76300 1.03459 1.02719 1.86482 1.23488 1.33895 1.84754 1.23336 0.91433 0.81502 0.73622 1.90698 1.66231 1.35948 1.41808 1.21227 0.88121 0.94935 0.96153 0.90347 1.21634 0.92720 0.88993 0.90667 0.91942 1.86799 1.72369 1.45057 1.29860 1.22309 0.95198 0.99916 1.01484 1.21553 0.99915 0.98754 0.95137 1.22268 0.85594 1.01995 0.97372 1.61799 1.09400 1.35660 1.15876 1.21007 0.99706 0.95370 0.86207 1.19010 0.98989 0.95170 1.04280 1.20677 0.98202 0.91603 0.95830 1.21293 0.99357 1.00360 1.03137 1.19142 0.91691 0.87331 0.90806 1.83567 1.47141 1.18778 1.62703 1.20792 1.10584 0.87436 1.27627 0.87554 1.24475 0.98596 0.94019 0.96919 1.69653 1.38565 1.03311 1.40174 0.86177 0.81955 0.79102 0.79641 1.19883 1.20841 1.18371 1.20126 1.02927 0.91411 1.06890 1.20483 0.95195 0.97036 0.96295 0.88237 0.91822 0.91896 0.78084 0.91048 0.90892 0.91278 0.90023 0.88198 0.95131 0.95047 0.90118 0.86954 0.84927 0.91057 0.86603 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.37 -4.05 10.57 -39.25 -0.41 -4.47 16 3 C 0.46 6.06 5.64 36.01 0.20 6.27 16 4 O -0.46 -7.69 15.08 -19.14 -0.29 -7.97 16 5 C 0.11 1.21 2.12 -68.87 -0.15 1.06 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 7 C 0.12 1.11 3.23 -26.65 -0.09 1.02 16 8 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 9 O -0.54 -5.97 12.17 -35.23 -0.43 -6.40 16 10 C -0.15 -1.14 5.71 -26.61 -0.15 -1.29 16 11 C -0.12 -1.15 5.94 -26.65 -0.16 -1.31 16 12 C 0.05 0.66 4.78 -3.83 -0.02 0.64 16 13 N -0.50 -6.85 4.25 -229.52 -0.98 -7.83 16 14 C 0.10 1.53 4.75 -4.98 -0.02 1.50 16 15 C -0.17 -2.98 4.40 -104.58 -0.46 -3.44 16 16 C -0.04 -0.86 9.69 -39.61 -0.38 -1.25 16 17 C -0.22 -4.96 9.17 -39.40 -0.36 -5.32 16 18 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 19 O -0.22 -5.77 8.59 0.05 0.00 -5.77 16 20 C -0.39 -11.09 9.94 30.89 0.31 -10.78 16 21 H 0.11 3.12 5.43 -52.49 -0.28 2.83 16 22 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 23 N -0.88 -25.68 13.96 55.48 0.77 -24.91 16 24 Si 0.91 21.81 28.62 -169.99 -4.86 16.94 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 28 C -0.19 -3.81 9.99 -39.39 -0.39 -4.21 16 29 C -0.07 -1.19 7.72 -39.61 -0.31 -1.50 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.37 2.42 9.09 45.56 0.41 2.83 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.97 7.80 -51.93 -0.41 0.56 16 38 H 0.10 1.44 5.59 -51.93 -0.29 1.15 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.08 1.30 6.19 -51.93 -0.32 0.98 16 42 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.13 3.13 5.62 -52.49 -0.30 2.84 16 44 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 46 H 0.11 1.49 8.04 -52.48 -0.42 1.07 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -33.59 373.87 -7.64 -41.23 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.81 Total: 5.55 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.27 Total: -12.01 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.20 Total: -32.74 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.13 Total: -24.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.59 -7.64 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781957252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.400 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds