Wall clock time and date at job start Tue Mar 31 2020 19:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99680 * 2 1 4 4 O 1.20830 * 120.00447 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00071 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.46106 * 332.71720 * 5 3 2 7 7 C 1.53031 * 109.46450 * 92.68818 * 5 3 2 8 8 H 1.09002 * 109.50668 * 299.13794 * 7 5 3 9 9 O 1.42905 * 109.50467 * 59.21296 * 7 5 3 10 10 C 1.53119 * 109.28122 * 179.19783 * 7 5 3 11 11 C 1.53124 * 109.15816 * 302.34383 * 10 7 5 12 12 C 1.53040 * 109.27703 * 57.65383 * 11 10 7 13 13 N 1.46846 * 109.46155 * 212.73835 * 5 3 2 14 14 C 1.46902 * 111.00078 * 54.14486 * 13 5 3 15 15 C 1.50694 * 109.47420 * 176.21072 * 14 13 5 16 16 C 1.38295 * 119.93270 * 89.99797 * 15 14 13 17 17 C 1.38098 * 120.06890 * 180.02562 * 16 15 14 18 18 C 1.38878 * 119.93422 * 359.97438 * 17 16 15 19 19 O 1.35746 * 120.07204 * 180.02562 * 18 17 16 20 20 C 1.34834 * 117.00082 * 3.07413 * 19 18 17 21 21 H 1.07998 * 119.99810 * 354.83499 * 20 19 18 22 22 C 1.38653 * 120.00050 * 174.54987 * 20 19 18 23 23 N 1.31559 * 119.99712 * 180.27850 * 22 20 19 24 24 Si 1.86799 * 120.00187 * 0.28180 * 22 20 19 25 25 H 1.48497 * 109.47116 * 89.99649 * 24 22 20 26 26 H 1.48497 * 109.47062 * 209.99715 * 24 22 20 27 27 H 1.48504 * 109.46843 * 329.99817 * 24 22 20 28 28 C 1.38878 * 119.86106 * 0.27538 * 18 17 16 29 29 C 1.38105 * 119.92690 * 359.47491 * 28 18 17 30 30 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47263 * 300.00058 * 1 2 3 32 32 H 1.09004 * 109.47036 * 60.00327 * 1 2 3 33 33 H 0.96707 * 113.99797 * 180.02562 * 9 7 5 34 34 H 1.08996 * 109.51961 * 62.24639 * 10 7 5 35 35 H 1.08998 * 109.52181 * 182.37792 * 10 7 5 36 36 H 1.09001 * 109.50335 * 177.59206 * 11 10 7 37 37 H 1.08995 * 109.50043 * 297.67362 * 11 10 7 38 38 H 1.08997 * 109.46080 * 180.80485 * 12 11 10 39 39 H 1.08996 * 109.46121 * 60.83765 * 12 11 10 40 40 H 1.09001 * 109.46919 * 56.20913 * 14 13 5 41 41 H 1.09002 * 109.47274 * 296.21153 * 14 13 5 42 42 H 1.08001 * 119.96611 * 359.97438 * 16 15 14 43 43 H 1.08002 * 120.03376 * 179.97438 * 17 16 15 44 44 H 0.96999 * 119.99491 * 180.02562 * 23 22 20 45 45 H 1.07993 * 120.03759 * 179.72150 * 28 18 17 46 46 H 1.08005 * 119.96563 * 180.27915 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9770 0.3818 0.4701 7 6 4.0714 1.3696 -1.4420 8 1 3.7670 0.4800 -1.9935 9 8 3.5185 2.5301 -2.0662 10 6 5.5993 1.4698 -1.4368 11 6 6.0202 2.6880 -0.6101 12 6 5.4586 2.5552 0.8073 13 7 3.9941 2.4635 0.7483 14 6 3.4113 2.4742 2.0967 15 6 3.9446 3.6556 2.8652 16 6 3.2788 4.8669 2.8183 17 6 3.7654 5.9515 3.5211 18 6 4.9243 5.8250 4.2758 19 8 5.4048 6.8892 4.9681 20 6 4.6754 8.0227 4.9323 21 1 3.7989 8.0811 4.3040 22 6 5.0471 9.1111 5.7066 23 7 4.3322 10.2151 5.6758 24 14 6.5630 9.0100 6.7934 25 1 7.7520 9.4636 6.0280 26 1 6.3784 9.8800 7.9826 27 1 6.7638 7.6060 7.2336 28 6 5.5935 4.6088 4.3167 29 6 5.0990 3.5264 3.6158 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.7964 2.6531 -2.9842 34 1 6.0220 0.5668 -0.9962 35 1 5.9606 1.5798 -2.4593 36 1 7.1081 2.7403 -0.5670 37 1 5.6303 3.5943 -1.0732 38 1 5.7445 3.4278 1.3945 39 1 5.8603 1.6560 1.2743 40 1 3.6780 1.5532 2.6150 41 1 2.3263 2.5485 2.0230 42 1 2.3778 4.9648 2.2309 43 1 3.2452 6.8973 3.4838 44 1 4.5926 10.9766 6.2172 45 1 6.4975 4.5085 4.8990 46 1 5.6165 2.5790 3.6508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781957252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:59 Heat of formation + Delta-G solvation = -142.253608 kcal Electronic energy + Delta-G solvation = -29603.852474 eV Core-core repulsion = 25458.937410 eV Total energy + Delta-G solvation = -4144.915065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96466 -40.96572 -40.00708 -38.60703 -37.44985 -36.76271 -34.52947 -33.90873 -32.26399 -31.88694 -30.66432 -28.71552 -27.86717 -26.57115 -25.03366 -24.18009 -23.51525 -22.08522 -21.79050 -20.68589 -19.81713 -19.11051 -18.75865 -18.04071 -17.64575 -17.52910 -16.79204 -16.60519 -16.28154 -15.99624 -15.71167 -15.58643 -15.41870 -15.21527 -15.02053 -14.65376 -14.38667 -14.31056 -14.22348 -14.08500 -14.05135 -13.28578 -13.18557 -13.09023 -12.91576 -12.83668 -12.65626 -12.41288 -12.27047 -12.24868 -11.93509 -11.75136 -11.72737 -11.53615 -11.29731 -11.16565 -10.91142 -10.68909 -9.81190 -9.31331 -8.96129 -8.50970 -6.24480 0.53490 0.57118 1.16478 1.31215 1.36402 1.52061 1.60166 2.27724 2.61564 2.89118 3.07833 3.19231 3.25852 3.67334 3.75755 3.86496 3.98218 4.04880 4.06335 4.12664 4.20299 4.30103 4.30878 4.31696 4.39743 4.45542 4.53398 4.59420 4.69071 4.75057 4.79596 4.85772 4.89325 4.94264 5.08403 5.21112 5.26086 5.33570 5.37054 5.46510 5.53141 5.72539 5.79308 5.87332 5.94456 6.09509 6.21097 6.79473 6.82702 6.97802 7.55628 8.60949 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.002740 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.095756 B =10216.623889 C =10823.445848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.510 6.510 5 C 0.101 3.899 6 H 0.110 0.890 7 C 0.117 3.883 8 H 0.088 0.912 9 O -0.570 6.570 10 C -0.141 4.141 11 C -0.115 4.115 12 C 0.053 3.947 13 N -0.524 5.524 14 C 0.108 3.892 15 C -0.146 4.146 16 C -0.056 4.056 17 C -0.238 4.238 18 C 0.125 3.875 19 O -0.241 6.241 20 C -0.401 4.401 21 H 0.076 0.924 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.975 3.025 25 H -0.264 1.264 26 H -0.268 1.268 27 H -0.259 1.259 28 C -0.186 4.186 29 C -0.053 4.053 30 H 0.136 0.864 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.389 0.611 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.285 0.715 45 H 0.136 0.864 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -27.765 -15.100 31.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.396 6.396 5 C -0.009 4.009 6 H 0.127 0.873 7 C 0.058 3.942 8 H 0.105 0.895 9 O -0.377 6.377 10 C -0.178 4.178 11 C -0.153 4.153 12 C -0.074 4.074 13 N -0.251 5.251 14 C -0.019 4.019 15 C -0.147 4.147 16 C -0.074 4.074 17 C -0.258 4.258 18 C 0.076 3.924 19 O -0.148 6.148 20 C -0.478 4.478 21 H 0.093 0.907 22 C -0.190 4.190 23 N -0.566 5.566 24 Si 0.797 3.203 25 H -0.189 1.189 26 H -0.193 1.193 27 H -0.184 1.184 28 C -0.205 4.205 29 C -0.071 4.071 30 H 0.154 0.846 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.238 0.762 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.154 0.846 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.501 -26.764 -14.571 30.510 hybrid contribution -0.084 0.575 0.302 0.654 sum 1.417 -26.189 -14.270 29.858 Atomic orbital electron populations 1.23501 0.74999 1.05674 1.02152 1.86478 1.24779 1.32730 1.84119 1.23825 0.92288 0.81317 0.72210 1.90689 1.67355 1.37496 1.44105 1.21498 0.86915 0.94912 0.97538 0.87312 1.21833 0.93764 0.89256 0.89385 0.89468 1.86757 1.73228 1.46245 1.31462 1.22268 0.93736 0.99390 1.02415 1.21527 1.00608 0.98961 0.94171 1.22293 0.84636 1.01852 0.98595 1.61635 1.10507 1.37974 1.14957 1.20911 0.98769 0.94944 0.87264 1.19408 0.97987 0.94833 1.02471 1.20751 0.98728 0.92093 0.95871 1.21203 0.99825 1.00195 1.04544 1.19663 0.92904 0.88162 0.91672 1.83507 1.47545 1.18884 1.64862 1.20689 1.10300 0.89017 1.27749 0.90684 1.25351 1.01868 0.93416 0.98328 1.69746 1.40707 1.04251 1.41879 0.85152 0.77997 0.79116 0.78035 1.18882 1.19259 1.18356 1.20500 1.03024 0.90334 1.06609 1.20929 0.94340 0.97957 0.93900 0.84592 0.92639 0.92342 0.76160 0.88753 0.88834 0.89735 0.92839 0.91067 0.92374 0.92056 0.91882 0.87074 0.87979 0.90520 0.84578 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.09 10.57 -51.38 -0.54 -7.63 16 3 C 0.46 11.27 5.64 71.24 0.40 11.67 16 4 O -0.51 -16.86 15.08 22.32 0.34 -16.52 16 5 C 0.10 1.96 2.12 44.19 0.09 2.05 16 6 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 7 C 0.12 1.75 3.23 30.64 0.10 1.85 16 8 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 9 O -0.57 -11.79 12.17 -148.98 -1.81 -13.60 16 10 C -0.14 -1.47 5.71 30.68 0.18 -1.30 16 11 C -0.11 -1.94 5.94 30.65 0.18 -1.75 16 12 C 0.05 1.09 4.78 86.33 0.41 1.50 16 13 N -0.52 -12.98 4.25 -880.06 -3.74 -16.72 16 14 C 0.11 2.90 4.75 85.55 0.41 3.31 16 15 C -0.15 -4.78 4.40 -19.84 -0.09 -4.87 16 16 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 17 C -0.24 -11.37 9.17 22.39 0.21 -11.17 16 18 C 0.13 6.03 6.65 22.58 0.15 6.18 16 19 O -0.24 -13.34 8.59 -22.74 -0.20 -13.53 16 20 C -0.40 -24.43 9.94 67.92 0.68 -23.76 16 21 H 0.08 4.87 5.43 -2.91 -0.02 4.86 16 22 C 0.01 0.51 5.49 84.83 0.47 0.97 16 23 N -0.93 -56.76 13.96 21.61 0.30 -56.46 16 24 Si 0.98 46.01 28.62 68.60 1.96 47.97 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 28 C -0.19 -6.99 9.99 22.39 0.22 -6.77 16 29 C -0.05 -1.60 7.72 22.25 0.17 -1.42 16 30 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.39 4.45 9.09 -74.05 -0.67 3.77 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.20 7.80 -2.39 -0.02 1.18 16 38 H 0.07 1.86 5.59 -2.39 -0.01 1.85 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 41 H 0.06 1.97 6.19 -2.39 -0.01 1.95 16 42 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 43 H 0.10 5.42 5.62 -2.91 -0.02 5.41 16 44 H 0.29 15.97 8.31 -92.71 -0.77 15.20 16 45 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 46 H 0.16 3.33 8.04 -2.91 -0.02 3.30 16 Total: -1.00 -79.56 373.87 1.63 -77.93 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.33 Total: 22.46 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.99 Total: -23.89 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -3.44 Total: -73.18 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -2.22 Total: -51.29 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.96 Total: 47.97 kcal Total: -79.56 1.63 -77.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781957252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.323 kcal (2) G-P(sol) polarization free energy of solvation -79.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds