Wall clock time and date at job start Tue Mar 31 2020 19:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99870 * 2 1 4 4 C 1.53005 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47101 * 175.03162 * 4 3 2 6 6 N 1.46495 * 110.45976 * 304.89850 * 5 4 3 7 7 C 1.34776 * 120.00030 * 304.55112 * 6 5 4 8 8 O 1.21590 * 119.99909 * 354.77850 * 7 6 5 9 9 C 1.47530 * 119.99892 * 174.78574 * 7 6 5 10 10 C 1.39671 * 120.19972 * 359.71607 * 9 7 6 11 11 C 1.37829 * 119.91899 * 179.71951 * 10 9 7 12 12 C 1.38581 * 120.32355 * 0.56637 * 11 10 9 13 13 C 1.38025 * 120.39959 * 359.71474 * 12 11 10 14 14 C 1.38836 * 120.07435 * 0.02562 * 13 12 11 15 15 O 1.35515 * 120.16122 * 180.02562 * 14 13 12 16 16 C 1.34810 * 117.00048 * 5.97244 * 15 14 13 17 17 H 1.08002 * 120.00289 * 5.52643 * 16 15 14 18 18 C 1.38699 * 120.00071 * 185.53387 * 16 15 14 19 19 N 1.31519 * 119.99848 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00105 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47116 * 89.99735 * 20 18 16 22 22 H 1.48501 * 109.47054 * 209.99639 * 20 18 16 23 23 H 1.48496 * 109.46817 * 329.99685 * 20 18 16 24 24 C 1.54507 * 110.51131 * 67.50636 * 5 4 3 25 25 C 1.54800 * 103.91627 * 118.61204 * 24 5 4 26 26 O 1.44428 * 104.80165 * 24.07924 * 25 24 5 27 27 C 1.44428 * 105.27425 * 319.41535 * 26 25 24 28 28 H 1.09003 * 109.46877 * 299.99841 * 1 2 3 29 29 H 1.09000 * 109.47604 * 60.00138 * 1 2 3 30 30 H 1.09004 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46920 * 299.99901 * 3 2 1 32 32 H 1.09000 * 109.47252 * 60.00270 * 3 2 1 33 33 H 1.09001 * 109.46749 * 295.03581 * 4 3 2 34 34 H 1.08997 * 109.46947 * 55.02737 * 4 3 2 35 35 H 0.97002 * 120.00033 * 124.54350 * 6 5 4 36 36 H 1.07997 * 120.03707 * 0.02562 * 10 9 7 37 37 H 1.07995 * 119.84130 * 180.27931 * 11 10 9 38 38 H 1.07997 * 119.79808 * 179.73861 * 12 11 10 39 39 H 1.07995 * 119.95987 * 180.02562 * 13 12 11 40 40 H 0.97004 * 119.99828 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.51596 * 237.28641 * 24 5 4 42 42 H 1.09007 * 110.51390 * 359.97438 * 24 5 4 43 43 H 1.09006 * 110.43458 * 265.22617 * 25 24 5 44 44 H 1.08996 * 110.40687 * 142.92578 * 25 24 5 45 45 H 1.08999 * 110.37597 * 281.67699 * 27 26 25 46 46 H 1.09007 * 110.46313 * 159.38460 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1572 2.5769 -0.1256 6 7 3.6397 3.2644 -1.3112 7 6 3.7437 2.6864 -2.5243 8 8 4.3501 1.6400 -2.6492 9 6 3.1217 3.3236 -3.7006 10 6 2.4192 4.5226 -3.5609 11 6 1.8454 5.1159 -4.6647 12 6 1.9517 4.5224 -5.9125 13 6 2.6379 3.3346 -6.0648 14 6 3.2269 2.7254 -4.9651 15 8 3.9015 1.5594 -5.1127 16 6 4.0709 1.1054 -6.3707 17 1 3.7558 1.7083 -7.2095 18 6 4.6499 -0.1362 -6.5878 19 7 5.0339 -0.8703 -5.5664 20 14 4.8853 -0.7650 -8.3310 21 1 6.2129 -0.3338 -8.8376 22 1 4.8113 -2.2481 -8.3364 23 1 3.8189 -0.2129 -9.2046 24 6 3.8811 3.4093 1.1465 25 6 5.2921 3.7133 1.7061 26 8 6.1704 3.6186 0.5635 27 6 5.6977 2.4783 -0.1863 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.8636 0.7223 0.9303 34 1 3.8507 0.5689 -0.8430 35 1 3.2222 4.1355 -1.2231 36 1 2.3300 4.9869 -2.5899 37 1 1.3063 6.0453 -4.5560 38 1 1.4952 4.9925 -6.7710 39 1 2.7167 2.8785 -7.0406 40 1 5.4392 -1.7385 -5.7183 41 1 3.3617 4.3335 0.8930 42 1 3.3012 2.8290 1.8643 43 1 5.5694 2.9763 2.4599 44 1 5.3253 4.7177 2.1280 45 1 6.0372 1.5520 0.2773 46 1 6.0409 2.5327 -1.2195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785404671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:05 Heat of formation + Delta-G solvation = -115.573908 kcal Electronic energy + Delta-G solvation = -30293.651224 eV Core-core repulsion = 26149.893078 eV Total energy + Delta-G solvation = -4143.758146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.50496 -39.19394 -37.79546 -37.54976 -36.34731 -34.68340 -32.35532 -32.04710 -30.18310 -30.03528 -28.93500 -28.09621 -26.09213 -25.38993 -23.59640 -23.05223 -22.56068 -21.54773 -20.28894 -19.20804 -18.05331 -17.67098 -16.65089 -16.56920 -16.05979 -15.86059 -15.61701 -15.36703 -14.76588 -14.68263 -14.51322 -14.33726 -14.18677 -13.95995 -13.70340 -13.45843 -12.98119 -12.77481 -12.55469 -12.49237 -12.21531 -11.93654 -11.71883 -11.64579 -11.36061 -11.33735 -11.17015 -11.12272 -11.00429 -10.91268 -10.77872 -10.59091 -10.46144 -9.81085 -9.60079 -9.52361 -8.88589 -8.77788 -8.55529 -8.28738 -7.32138 -6.45131 -4.04526 1.69532 2.30775 3.12073 3.12890 3.17518 3.53483 3.68213 3.79917 3.93270 4.03695 4.39218 4.61582 4.81027 4.88211 5.02289 5.09420 5.12840 5.17822 5.22761 5.32550 5.39811 5.43083 5.48099 5.51083 5.54673 5.57145 5.64624 5.69701 5.73469 5.76156 5.84528 6.03094 6.09489 6.12623 6.15871 6.48917 6.55222 6.67238 6.79201 6.90808 6.97324 7.05107 7.23015 7.27354 7.29110 7.68278 7.91056 8.08241 8.94551 9.05942 9.66526 10.68493 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.004048 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.078553 B = 6914.779000 C = 7295.217983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.070 3.930 4 C -0.128 4.128 5 C 0.161 3.839 6 N -0.733 5.733 7 C 0.557 3.443 8 O -0.494 6.494 9 C -0.229 4.229 10 C -0.038 4.038 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.237 4.237 14 C 0.189 3.811 15 O -0.121 6.121 16 C -0.403 4.403 17 H 0.093 0.907 18 C 0.046 3.954 19 N -0.830 5.830 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.159 4.159 25 C 0.045 3.955 26 O -0.373 6.373 27 C 0.044 3.956 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.393 0.607 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.272 0.728 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 8.640 12.055 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.007 4.007 4 C -0.166 4.166 5 C 0.073 3.927 6 N -0.390 5.390 7 C 0.347 3.653 8 O -0.368 6.368 9 C -0.234 4.234 10 C -0.057 4.057 11 C -0.251 4.251 12 C -0.069 4.069 13 C -0.257 4.257 14 C 0.129 3.871 15 O -0.019 6.019 16 C -0.479 4.479 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.461 5.461 20 Si 0.764 3.236 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.197 4.197 25 C -0.033 4.033 26 O -0.292 6.292 27 C -0.034 4.034 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.228 0.772 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.570 7.363 12.104 15.223 hybrid contribution -0.703 0.370 -0.859 1.170 sum -6.273 7.733 11.244 15.020 Atomic orbital electron populations 1.22700 0.81425 1.02553 0.99662 1.87897 1.19373 1.28137 1.95342 1.22437 0.93932 0.84523 0.99780 1.21865 0.93461 0.96457 1.04851 1.21380 0.94136 0.92078 0.85064 1.46041 1.64290 1.22637 1.06009 1.18210 0.80184 0.84799 0.82111 1.90915 1.39625 1.21767 1.84444 1.18825 1.12703 0.99926 0.91912 1.20746 0.94434 0.92913 0.97642 1.20449 1.09083 1.02421 0.93105 1.20897 0.95387 0.94038 0.96623 1.21169 1.05962 0.98949 0.99579 1.19284 0.88826 0.87139 0.91834 1.84185 1.58640 1.29149 1.29932 1.21476 1.42217 1.02754 0.81445 0.88969 1.25371 0.96058 0.95042 0.99768 1.70119 1.34768 1.10935 1.30320 0.85742 0.79172 0.78419 0.80271 1.19728 1.20127 1.19097 1.23373 0.98807 1.00770 0.96749 1.23433 0.88083 1.01996 0.89743 1.89167 1.53677 1.49299 1.37017 1.23875 0.91999 0.88909 0.98599 0.94564 0.94013 0.89799 0.92859 0.94122 0.90726 0.87532 0.77165 0.87205 0.87349 0.87232 0.85105 0.91832 0.89966 0.89357 0.92168 0.89148 0.91369 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -6.33 10.70 -35.23 -0.38 -6.70 16 3 C 0.07 1.02 5.58 37.16 0.21 1.22 16 4 C -0.13 -1.97 4.03 -26.73 -0.11 -2.07 16 5 C 0.16 2.25 0.66 -130.26 -0.09 2.16 16 6 N -0.73 -11.32 4.21 -47.19 -0.20 -11.52 16 7 C 0.56 11.62 6.61 -12.47 -0.08 11.54 16 8 O -0.49 -12.61 12.13 -16.57 -0.20 -12.81 16 9 C -0.23 -4.84 5.89 -104.81 -0.62 -5.46 16 10 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 11 C -0.23 -3.74 10.03 -39.60 -0.40 -4.14 16 12 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 13 C -0.24 -5.06 9.12 -39.44 -0.36 -5.42 16 14 C 0.19 4.63 6.66 -38.60 -0.26 4.37 16 15 O -0.12 -3.52 7.84 -21.03 -0.16 -3.68 16 16 C -0.40 -11.31 9.44 30.90 0.29 -11.02 16 17 H 0.09 2.36 5.30 -52.49 -0.28 2.08 16 18 C 0.05 1.27 5.49 -17.52 -0.10 1.17 16 19 N -0.83 -24.82 13.67 55.48 0.76 -24.06 16 20 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.16 -1.57 6.11 -24.99 -0.15 -1.72 16 25 C 0.04 0.46 7.64 38.11 0.29 0.75 16 26 O -0.37 -5.47 11.65 -35.23 -0.41 -5.88 16 27 C 0.04 0.69 6.50 37.94 0.25 0.93 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.85 7.04 -51.93 -0.37 0.49 16 32 H 0.04 0.47 7.15 -51.93 -0.37 0.10 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 2.14 6.28 -51.93 -0.33 1.82 16 35 H 0.39 4.94 6.19 -40.82 -0.25 4.68 16 36 H 0.11 1.41 6.42 -52.49 -0.34 1.07 16 37 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.08 0.70 7.53 -51.93 -0.39 0.31 16 42 H 0.09 0.73 6.95 -51.93 -0.36 0.37 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.00 7.87 -51.93 -0.41 0.60 16 46 H 0.11 2.07 6.82 -51.92 -0.35 1.71 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -34.58 371.93 -7.05 -41.64 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.26 Total: 10.45 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.78 Total: -8.48 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.56 Total: -35.58 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.15 Total: -29.09 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.58 -7.05 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785404671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.938 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds