Wall clock time and date at job start Tue Mar 31 2020 19:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99870 * 2 1 4 4 C 1.53005 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47101 * 175.03162 * 4 3 2 6 6 N 1.46495 * 110.45976 * 304.89850 * 5 4 3 7 7 C 1.34776 * 120.00030 * 304.55112 * 6 5 4 8 8 O 1.21590 * 119.99909 * 354.77850 * 7 6 5 9 9 C 1.47530 * 119.99892 * 174.78574 * 7 6 5 10 10 C 1.39671 * 120.19972 * 359.71607 * 9 7 6 11 11 C 1.37829 * 119.91899 * 179.71951 * 10 9 7 12 12 C 1.38581 * 120.32355 * 0.56637 * 11 10 9 13 13 C 1.38025 * 120.39959 * 359.71474 * 12 11 10 14 14 C 1.38836 * 120.07435 * 0.02562 * 13 12 11 15 15 O 1.35515 * 120.16122 * 180.02562 * 14 13 12 16 16 C 1.34810 * 117.00048 * 5.97244 * 15 14 13 17 17 H 1.08002 * 120.00289 * 5.52643 * 16 15 14 18 18 C 1.38699 * 120.00071 * 185.53387 * 16 15 14 19 19 N 1.31519 * 119.99848 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00105 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47116 * 89.99735 * 20 18 16 22 22 H 1.48501 * 109.47054 * 209.99639 * 20 18 16 23 23 H 1.48496 * 109.46817 * 329.99685 * 20 18 16 24 24 C 1.54507 * 110.51131 * 67.50636 * 5 4 3 25 25 C 1.54800 * 103.91627 * 118.61204 * 24 5 4 26 26 O 1.44428 * 104.80165 * 24.07924 * 25 24 5 27 27 C 1.44428 * 105.27425 * 319.41535 * 26 25 24 28 28 H 1.09003 * 109.46877 * 299.99841 * 1 2 3 29 29 H 1.09000 * 109.47604 * 60.00138 * 1 2 3 30 30 H 1.09004 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46920 * 299.99901 * 3 2 1 32 32 H 1.09000 * 109.47252 * 60.00270 * 3 2 1 33 33 H 1.09001 * 109.46749 * 295.03581 * 4 3 2 34 34 H 1.08997 * 109.46947 * 55.02737 * 4 3 2 35 35 H 0.97002 * 120.00033 * 124.54350 * 6 5 4 36 36 H 1.07997 * 120.03707 * 0.02562 * 10 9 7 37 37 H 1.07995 * 119.84130 * 180.27931 * 11 10 9 38 38 H 1.07997 * 119.79808 * 179.73861 * 12 11 10 39 39 H 1.07995 * 119.95987 * 180.02562 * 13 12 11 40 40 H 0.97004 * 119.99828 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.51596 * 237.28641 * 24 5 4 42 42 H 1.09007 * 110.51390 * 359.97438 * 24 5 4 43 43 H 1.09006 * 110.43458 * 265.22617 * 25 24 5 44 44 H 1.08996 * 110.40687 * 142.92578 * 25 24 5 45 45 H 1.08999 * 110.37597 * 281.67699 * 27 26 25 46 46 H 1.09007 * 110.46313 * 159.38460 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1572 2.5769 -0.1256 6 7 3.6397 3.2644 -1.3112 7 6 3.7437 2.6864 -2.5243 8 8 4.3501 1.6400 -2.6492 9 6 3.1217 3.3236 -3.7006 10 6 2.4192 4.5226 -3.5609 11 6 1.8454 5.1159 -4.6647 12 6 1.9517 4.5224 -5.9125 13 6 2.6379 3.3346 -6.0648 14 6 3.2269 2.7254 -4.9651 15 8 3.9015 1.5594 -5.1127 16 6 4.0709 1.1054 -6.3707 17 1 3.7558 1.7083 -7.2095 18 6 4.6499 -0.1362 -6.5878 19 7 5.0339 -0.8703 -5.5664 20 14 4.8853 -0.7650 -8.3310 21 1 6.2129 -0.3338 -8.8376 22 1 4.8113 -2.2481 -8.3364 23 1 3.8189 -0.2129 -9.2046 24 6 3.8811 3.4093 1.1465 25 6 5.2921 3.7133 1.7061 26 8 6.1704 3.6186 0.5635 27 6 5.6977 2.4783 -0.1863 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.8636 0.7223 0.9303 34 1 3.8507 0.5689 -0.8430 35 1 3.2222 4.1355 -1.2231 36 1 2.3300 4.9869 -2.5899 37 1 1.3063 6.0453 -4.5560 38 1 1.4952 4.9925 -6.7710 39 1 2.7167 2.8785 -7.0406 40 1 5.4392 -1.7385 -5.7183 41 1 3.3617 4.3335 0.8930 42 1 3.3012 2.8290 1.8643 43 1 5.5694 2.9763 2.4599 44 1 5.3253 4.7177 2.1280 45 1 6.0372 1.5520 0.2773 46 1 6.0409 2.5327 -1.2195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785404671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:04 Heat of formation + Delta-G solvation = -141.901284 kcal Electronic energy + Delta-G solvation = -30294.792864 eV Core-core repulsion = 26149.893078 eV Total energy + Delta-G solvation = -4144.899787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83324 -40.74617 -39.23362 -38.80389 -38.00924 -36.02813 -34.32877 -33.48315 -31.57819 -31.03296 -30.56143 -29.27748 -27.36863 -27.14121 -25.03922 -24.12482 -23.79244 -23.11982 -21.65203 -20.62894 -19.81178 -19.27420 -18.02627 -17.74619 -17.52105 -17.01580 -16.75256 -16.47374 -16.37653 -16.13147 -15.90186 -15.85552 -15.71751 -15.38458 -15.20344 -14.99720 -14.40441 -14.21442 -13.97716 -13.74838 -13.54714 -13.33011 -13.09050 -12.96629 -12.73627 -12.62035 -12.53160 -12.35810 -12.32016 -12.28747 -12.13334 -12.06051 -11.69222 -11.41072 -10.88987 -10.83418 -10.67713 -10.41826 -10.01530 -9.77883 -9.03215 -8.44836 -6.15209 0.13312 0.73017 1.30975 1.42533 1.49779 2.11446 2.14866 2.20458 2.70854 2.87306 3.01080 3.24019 3.38818 3.46206 3.73809 3.94224 3.99059 4.06980 4.08315 4.11141 4.25278 4.29387 4.32656 4.40079 4.45284 4.47187 4.52968 4.54533 4.66632 4.75837 4.77778 4.85811 4.89872 4.92240 4.97131 4.98592 5.06702 5.13632 5.21417 5.48289 5.60169 5.61754 5.69576 5.80550 5.95654 6.17127 6.22319 6.72025 6.94713 7.52949 7.80674 8.75412 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.004048 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.078553 B = 6914.779000 C = 7295.217983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.425 6.425 3 C 0.074 3.926 4 C -0.125 4.125 5 C 0.159 3.841 6 N -0.708 5.708 7 C 0.552 3.448 8 O -0.552 6.552 9 C -0.245 4.245 10 C -0.031 4.031 11 C -0.201 4.201 12 C -0.042 4.042 13 C -0.259 4.259 14 C 0.148 3.852 15 O -0.186 6.186 16 C -0.426 4.426 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.903 5.903 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.247 1.247 24 C -0.144 4.144 25 C 0.037 3.963 26 O -0.393 6.393 27 C 0.046 3.954 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.411 0.589 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.120 0.880 40 H 0.270 0.730 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.068 0.932 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 13.163 13.909 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.345 6.345 3 C -0.002 4.002 4 C -0.163 4.163 5 C 0.072 3.928 6 N -0.365 5.365 7 C 0.342 3.658 8 O -0.429 6.429 9 C -0.250 4.250 10 C -0.049 4.049 11 C -0.219 4.219 12 C -0.060 4.060 13 C -0.278 4.278 14 C 0.093 3.907 15 O -0.088 6.088 16 C -0.502 4.502 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.539 5.539 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.171 1.171 24 C -0.182 4.182 25 C -0.039 4.039 26 O -0.312 6.312 27 C -0.032 4.032 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.250 0.750 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.169 0.831 39 H 0.138 0.862 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.671 12.004 13.994 20.375 hybrid contribution 0.041 -0.617 -1.215 1.363 sum -8.630 11.388 12.779 19.170 Atomic orbital electron populations 1.22905 0.79475 1.03671 1.00818 1.87857 1.21688 1.29346 1.95580 1.22453 0.92782 0.84207 1.00765 1.21792 0.94779 0.96547 1.03218 1.21500 0.92583 0.92327 0.86379 1.45775 1.62943 1.22912 1.04840 1.18424 0.79536 0.84180 0.83697 1.90919 1.42066 1.24466 1.85476 1.19353 1.13144 1.01457 0.91053 1.21309 0.92277 0.90726 1.00598 1.21166 1.06074 1.03046 0.91646 1.21420 0.93366 0.92071 0.99134 1.21300 1.07345 1.00833 0.98367 1.20108 0.89529 0.86662 0.94390 1.84186 1.62548 1.31906 1.30189 1.21972 1.42737 1.03395 0.82101 0.87889 1.26708 0.95541 0.95000 1.04747 1.70317 1.38448 1.11785 1.33324 0.84598 0.79709 0.77674 0.74221 1.18840 1.19696 1.17079 1.23397 0.99262 1.01315 0.94197 1.23789 0.87297 1.04305 0.88484 1.89143 1.55111 1.48401 1.38578 1.23619 0.93555 0.89632 0.96369 0.91355 0.94706 0.88946 0.94918 0.89602 0.88677 0.93600 0.74992 0.82206 0.81885 0.83051 0.86180 0.92110 0.87288 0.86632 0.90722 0.86244 0.91396 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.42 -13.89 10.70 -148.98 -1.59 -15.49 16 3 C 0.07 2.08 5.58 71.98 0.40 2.48 16 4 C -0.12 -3.94 4.03 30.59 0.12 -3.81 16 5 C 0.16 4.35 0.66 4.62 0.00 4.36 16 6 N -0.71 -21.39 4.21 -421.47 -1.78 -23.16 16 7 C 0.55 24.26 6.61 86.69 0.57 24.83 16 8 O -0.55 -31.32 12.13 16.90 0.20 -31.12 16 9 C -0.25 -10.54 5.89 -19.99 -0.12 -10.66 16 10 C -0.03 -0.91 9.53 22.52 0.21 -0.70 16 11 C -0.20 -5.32 10.03 22.25 0.22 -5.10 16 12 C -0.04 -1.31 10.03 22.30 0.22 -1.09 16 13 C -0.26 -11.21 9.12 22.36 0.20 -11.00 16 14 C 0.15 7.68 6.66 22.91 0.15 7.83 16 15 O -0.19 -11.88 7.84 0.94 0.01 -11.87 16 16 C -0.43 -26.06 9.44 67.93 0.64 -25.42 16 17 H 0.10 5.69 5.30 -2.91 -0.02 5.67 16 18 C -0.02 -1.24 5.49 84.85 0.47 -0.77 16 19 N -0.90 -59.67 13.67 21.62 0.30 -59.37 16 20 Si 1.02 44.95 29.55 68.60 2.03 46.98 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 24 C -0.14 -2.21 6.11 31.72 0.19 -2.02 16 25 C 0.04 0.63 7.64 72.60 0.55 1.18 16 26 O -0.39 -11.21 11.65 -148.98 -1.74 -12.95 16 27 C 0.05 1.53 6.50 72.49 0.47 2.00 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.03 1.03 7.04 -2.39 -0.02 1.02 16 32 H 0.09 1.62 7.15 -2.39 -0.02 1.60 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 2.04 6.28 -2.39 -0.01 2.03 16 35 H 0.41 8.88 6.19 -92.71 -0.57 8.31 16 36 H 0.16 3.08 6.42 -2.91 -0.02 3.06 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.12 5.32 5.72 -2.91 -0.02 5.30 16 40 H 0.27 16.39 8.31 -92.70 -0.77 15.62 16 41 H 0.11 1.15 7.53 -2.39 -0.02 1.14 16 42 H 0.12 1.24 6.95 -2.38 -0.02 1.23 16 43 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 46 H 0.06 2.58 6.82 -2.38 -0.02 2.56 16 Total: -1.00 -92.20 371.93 3.45 -88.75 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.44 Total: 34.22 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 5.58 Total: -15.99 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.48 Total: -82.54 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -3.12 Total: -71.42 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -92.20 3.45 -88.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785404671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.150 kcal (2) G-P(sol) polarization free energy of solvation -92.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds