Wall clock time and date at job start Tue Mar 31 2020 18:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00639 * 2 1 4 4 C 1.34779 * 119.99901 * 180.02562 * 2 1 3 5 5 O 1.21289 * 119.99683 * 359.97438 * 4 2 1 6 6 C 1.50693 * 120.00419 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.47296 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46992 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46884 * 180.02562 * 8 7 6 10 10 O 1.20821 * 120.00185 * 359.97438 * 9 8 7 11 11 O 1.34231 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.45196 * 117.00047 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47037 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93130 * 269.73094 * 13 12 11 15 15 C 1.38099 * 120.07055 * 179.72623 * 14 13 12 16 16 C 1.38885 * 119.92916 * 0.56465 * 15 14 13 17 17 O 1.35746 * 120.07221 * 179.68553 * 16 15 14 18 18 C 1.34828 * 117.00240 * 174.48968 * 17 16 15 19 19 H 1.08006 * 120.00054 * 5.05118 * 18 17 16 20 20 C 1.38655 * 120.00332 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47105 * 60.00000 * 22 20 18 24 24 H 1.48499 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47062 * 300.00069 * 22 20 18 26 26 C 1.38888 * 119.85809 * 359.70827 * 16 15 14 27 27 C 1.38097 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47013 * 270.00286 * 1 2 3 29 29 H 1.09003 * 109.46428 * 29.99666 * 1 2 3 30 30 H 1.08994 * 109.47336 * 149.99527 * 1 2 3 31 31 H 1.08997 * 109.47732 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47290 * 300.00536 * 3 2 1 33 33 H 1.08998 * 109.46960 * 60.00167 * 3 2 1 34 34 H 1.09001 * 109.47125 * 59.99768 * 6 4 2 35 35 H 1.09000 * 109.47515 * 299.99824 * 6 4 2 36 36 H 1.09001 * 109.46840 * 60.00063 * 7 6 4 37 37 H 1.08996 * 109.47183 * 300.00076 * 7 6 4 38 38 H 1.09001 * 109.47150 * 60.00408 * 8 7 6 39 39 H 1.08996 * 109.47345 * 300.00132 * 8 7 6 40 40 H 1.08996 * 109.47566 * 299.99750 * 12 11 9 41 41 H 1.09002 * 109.47418 * 60.00155 * 12 11 9 42 42 H 1.08001 * 119.96614 * 359.97036 * 14 13 12 43 43 H 1.08000 * 120.04137 * 180.26759 * 15 14 13 44 44 H 0.97003 * 120.00423 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.03290 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5323 -2.2176 -0.0005 6 6 3.6458 -1.1674 -0.0011 7 6 4.1557 -2.6099 -0.0010 8 6 5.6858 -2.6100 -0.0022 9 6 6.1880 -4.0308 -0.0027 10 8 5.4028 -4.9491 -0.0017 11 8 7.5077 -4.2762 -0.0033 12 6 7.9192 -5.6686 -0.0032 13 6 9.4242 -5.7476 -0.0045 14 6 10.1119 -5.7898 -1.2036 15 6 11.4913 -5.8565 -1.2082 16 6 12.1873 -5.8930 -0.0069 17 8 13.5429 -5.9650 -0.0080 18 6 14.1613 -5.8819 1.1872 19 1 13.5782 -5.8457 2.0956 20 6 15.5459 -5.8427 1.2502 21 7 16.2561 -5.8872 0.1438 22 14 16.4026 -5.7269 2.9060 23 1 16.0390 -6.9040 3.7350 24 1 17.8732 -5.7000 2.7017 25 1 15.9767 -4.4837 3.5978 26 6 11.4934 -5.8562 1.1957 27 6 10.1144 -5.7829 1.1935 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 3.2692 1.0694 0.0005 32 1 1.9343 1.8403 -0.8900 33 1 1.9344 1.8402 0.8900 34 1 4.0095 -0.6537 0.8888 35 1 4.0089 -0.6534 -0.8911 36 1 3.7920 -3.1239 -0.8907 37 1 3.7927 -3.1235 0.8892 38 1 6.0499 -2.0959 0.8873 39 1 6.0484 -2.0965 -0.8926 40 1 7.5300 -6.1625 0.8870 41 1 7.5291 -6.1629 -0.8929 42 1 9.5699 -5.7666 -2.1374 43 1 12.0281 -5.8850 -2.1449 44 1 17.2248 -5.8594 0.1877 45 1 12.0318 -5.8849 2.1315 46 1 9.5743 -5.7538 2.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785834203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:32 Heat of formation + Delta-G solvation = -130.041712 kcal Electronic energy + Delta-G solvation = -26779.534135 eV Core-core repulsion = 22635.148618 eV Total energy + Delta-G solvation = -4144.385517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53094 -40.15629 -39.07696 -37.09402 -36.12788 -35.95958 -34.68600 -32.44540 -30.77911 -30.25916 -29.86123 -28.14695 -26.53395 -25.89979 -24.83753 -22.94613 -22.05946 -20.69854 -20.49784 -19.62879 -18.08462 -17.63661 -17.42057 -17.11996 -16.86471 -16.50596 -16.32107 -16.00416 -15.18418 -14.66176 -14.61557 -14.37743 -13.91559 -13.79567 -13.68549 -13.53690 -13.17058 -13.07719 -12.99834 -12.78889 -12.77636 -12.66269 -12.43413 -12.27522 -12.12174 -11.72919 -11.70386 -11.38793 -11.13936 -11.02859 -10.81980 -10.71459 -10.51742 -10.42191 -10.40797 -10.18381 -9.41856 -9.19925 -8.90658 -8.26921 -7.33276 -6.52535 -4.11340 1.95585 2.15305 2.22050 2.25386 2.50688 2.98977 3.09564 3.12733 3.13513 3.90931 4.04161 4.37698 4.49929 4.58472 4.60347 4.66520 4.78110 4.84673 4.97705 5.01991 5.05238 5.10416 5.12597 5.16588 5.21178 5.22665 5.26053 5.26968 5.36445 5.64844 5.67586 5.75192 5.77371 5.90976 6.03818 6.12911 6.33320 6.58013 6.60366 6.80941 6.83844 6.96749 7.15002 7.27112 7.35297 7.71600 7.74330 7.84086 7.92054 8.92550 9.60488 10.64820 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.001530 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.108953 B =18292.506584 C =18833.594097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.627 5.627 3 C 0.074 3.926 4 C 0.511 3.489 5 O -0.533 6.533 6 C -0.140 4.140 7 C -0.095 4.095 8 C -0.116 4.116 9 C 0.456 3.544 10 O -0.513 6.513 11 O -0.352 6.352 12 C 0.129 3.871 13 C -0.204 4.204 14 C -0.049 4.049 15 C -0.196 4.196 16 C 0.163 3.837 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.238 4.238 27 C -0.045 4.045 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.130 0.870 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.601 14.719 0.193 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.362 5.362 3 C -0.069 4.069 4 C 0.299 3.701 5 O -0.409 6.409 6 C -0.180 4.180 7 C -0.133 4.133 8 C -0.153 4.153 9 C 0.299 3.701 10 O -0.401 6.401 11 O -0.269 6.269 12 C 0.057 3.943 13 C -0.205 4.205 14 C -0.067 4.067 15 C -0.215 4.215 16 C 0.108 3.892 17 O -0.074 6.074 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.257 4.257 27 C -0.063 4.063 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.082 0.918 45 H 0.147 0.853 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.689 13.817 -0.059 28.293 hybrid contribution 0.412 0.152 0.896 0.997 sum -24.277 13.969 0.837 28.022 Atomic orbital electron populations 1.21618 0.79179 1.03135 1.01913 1.47801 1.07239 1.06554 1.74640 1.21891 0.97672 0.85231 1.02152 1.20800 0.90470 0.83100 0.75708 1.90743 1.70422 1.30922 1.48793 1.21707 0.91793 0.99804 1.04665 1.21172 0.91980 0.94663 1.05478 1.21395 0.96642 0.91334 1.05957 1.23631 0.81220 0.92632 0.72626 1.90674 1.56967 1.47008 1.45495 1.86649 1.24677 1.32486 1.83099 1.21693 0.92378 0.78215 1.02046 1.18881 0.92060 1.15584 0.93995 1.20509 0.93106 0.96643 0.96472 1.20196 0.93255 1.11675 0.96377 1.19442 0.84976 0.91481 0.93321 1.83975 1.13039 1.77250 1.33182 1.21324 0.89784 1.52853 0.83066 0.88931 1.25317 0.95378 0.96301 0.99403 1.70026 1.06921 1.45240 1.27122 0.85759 0.78305 0.79275 0.79989 1.19416 1.20202 1.19419 1.21142 0.94011 1.12003 0.98548 1.20618 0.93619 0.95759 0.96342 0.92748 0.91269 0.90469 0.89865 0.91864 0.91891 0.88428 0.88416 0.90129 0.90131 0.87615 0.87611 0.91259 0.91221 0.86890 0.86206 0.91817 0.85275 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.48 59.85 0.63 1.10 16 2 N -0.63 -4.00 3.27 -189.52 -0.62 -4.62 16 3 C 0.07 0.20 10.60 59.85 0.63 0.83 16 4 C 0.51 4.56 7.67 -10.99 -0.08 4.48 16 5 O -0.53 -7.17 15.56 5.55 0.09 -7.09 16 6 C -0.14 -0.82 4.01 -27.89 -0.11 -0.93 16 7 C -0.09 -0.84 3.79 -26.73 -0.10 -0.94 16 8 C -0.12 -0.94 5.81 -27.88 -0.16 -1.11 16 9 C 0.46 5.93 7.96 36.00 0.29 6.21 16 10 O -0.51 -8.17 15.73 -18.75 -0.29 -8.47 16 11 O -0.35 -5.16 10.20 -39.26 -0.40 -5.56 16 12 C 0.13 1.95 5.59 36.01 0.20 2.16 16 13 C -0.20 -3.57 5.52 -104.58 -0.58 -4.14 16 14 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 15 C -0.20 -4.06 9.99 -39.39 -0.39 -4.46 16 16 C 0.16 3.86 6.65 -39.10 -0.26 3.60 16 17 O -0.17 -4.82 9.76 0.06 0.00 -4.82 16 18 C -0.39 -10.79 9.49 30.89 0.29 -10.49 16 19 H 0.09 2.33 5.20 -52.48 -0.27 2.05 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 21 N -0.86 -24.67 13.67 55.48 0.76 -23.91 16 22 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.24 -5.07 9.17 -39.39 -0.36 -5.43 16 27 C -0.04 -0.82 9.69 -39.61 -0.38 -1.21 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 30 H 0.08 0.56 7.42 -51.93 -0.39 0.18 16 31 H 0.08 0.12 5.77 -51.93 -0.30 -0.18 16 32 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.10 0.36 7.79 -51.93 -0.40 -0.05 16 35 H 0.10 0.35 7.79 -51.93 -0.40 -0.05 16 36 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 37 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.00 8.08 -51.93 -0.42 0.59 16 41 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -35.33 393.82 -7.11 -42.44 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.67 Total: 1.66 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.87 Total: -10.59 kcal Atomic # 7 Polarization: -28.66 SS G_CDS: 0.14 Total: -28.53 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.61 Total: -25.93 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.33 -7.11 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785834203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.603 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds