Wall clock time and date at job start Tue Mar 31 2020 18:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00639 * 2 1 4 4 C 1.34779 * 119.99901 * 180.02562 * 2 1 3 5 5 O 1.21289 * 119.99683 * 359.97438 * 4 2 1 6 6 C 1.50693 * 120.00419 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.47296 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46992 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46884 * 180.02562 * 8 7 6 10 10 O 1.20821 * 120.00185 * 359.97438 * 9 8 7 11 11 O 1.34231 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.45196 * 117.00047 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47037 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93130 * 269.73094 * 13 12 11 15 15 C 1.38099 * 120.07055 * 179.72623 * 14 13 12 16 16 C 1.38885 * 119.92916 * 0.56465 * 15 14 13 17 17 O 1.35746 * 120.07221 * 179.68553 * 16 15 14 18 18 C 1.34828 * 117.00240 * 174.48968 * 17 16 15 19 19 H 1.08006 * 120.00054 * 5.05118 * 18 17 16 20 20 C 1.38655 * 120.00332 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47105 * 60.00000 * 22 20 18 24 24 H 1.48499 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47062 * 300.00069 * 22 20 18 26 26 C 1.38888 * 119.85809 * 359.70827 * 16 15 14 27 27 C 1.38097 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47013 * 270.00286 * 1 2 3 29 29 H 1.09003 * 109.46428 * 29.99666 * 1 2 3 30 30 H 1.08994 * 109.47336 * 149.99527 * 1 2 3 31 31 H 1.08997 * 109.47732 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47290 * 300.00536 * 3 2 1 33 33 H 1.08998 * 109.46960 * 60.00167 * 3 2 1 34 34 H 1.09001 * 109.47125 * 59.99768 * 6 4 2 35 35 H 1.09000 * 109.47515 * 299.99824 * 6 4 2 36 36 H 1.09001 * 109.46840 * 60.00063 * 7 6 4 37 37 H 1.08996 * 109.47183 * 300.00076 * 7 6 4 38 38 H 1.09001 * 109.47150 * 60.00408 * 8 7 6 39 39 H 1.08996 * 109.47345 * 300.00132 * 8 7 6 40 40 H 1.08996 * 109.47566 * 299.99750 * 12 11 9 41 41 H 1.09002 * 109.47418 * 60.00155 * 12 11 9 42 42 H 1.08001 * 119.96614 * 359.97036 * 14 13 12 43 43 H 1.08000 * 120.04137 * 180.26759 * 15 14 13 44 44 H 0.97003 * 120.00423 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.03290 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5323 -2.2176 -0.0005 6 6 3.6458 -1.1674 -0.0011 7 6 4.1557 -2.6099 -0.0010 8 6 5.6858 -2.6100 -0.0022 9 6 6.1880 -4.0308 -0.0027 10 8 5.4028 -4.9491 -0.0017 11 8 7.5077 -4.2762 -0.0033 12 6 7.9192 -5.6686 -0.0032 13 6 9.4242 -5.7476 -0.0045 14 6 10.1119 -5.7898 -1.2036 15 6 11.4913 -5.8565 -1.2082 16 6 12.1873 -5.8930 -0.0069 17 8 13.5429 -5.9650 -0.0080 18 6 14.1613 -5.8819 1.1872 19 1 13.5782 -5.8457 2.0956 20 6 15.5459 -5.8427 1.2502 21 7 16.2561 -5.8872 0.1438 22 14 16.4026 -5.7269 2.9060 23 1 16.0390 -6.9040 3.7350 24 1 17.8732 -5.7000 2.7017 25 1 15.9767 -4.4837 3.5978 26 6 11.4934 -5.8562 1.1957 27 6 10.1144 -5.7829 1.1935 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 3.2692 1.0694 0.0005 32 1 1.9343 1.8403 -0.8900 33 1 1.9344 1.8402 0.8900 34 1 4.0095 -0.6537 0.8888 35 1 4.0089 -0.6534 -0.8911 36 1 3.7920 -3.1239 -0.8907 37 1 3.7927 -3.1235 0.8892 38 1 6.0499 -2.0959 0.8873 39 1 6.0484 -2.0965 -0.8926 40 1 7.5300 -6.1625 0.8870 41 1 7.5291 -6.1629 -0.8929 42 1 9.5699 -5.7666 -2.1374 43 1 12.0281 -5.8850 -2.1449 44 1 17.2248 -5.8594 0.1877 45 1 12.0318 -5.8849 2.1315 46 1 9.5743 -5.7538 2.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785834203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:31 Heat of formation + Delta-G solvation = -152.169291 kcal Electronic energy + Delta-G solvation = -26780.493659 eV Core-core repulsion = 22635.148618 eV Total energy + Delta-G solvation = -4145.345041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55753 -40.88822 -40.72411 -38.60835 -37.38931 -36.56720 -35.41013 -34.36173 -32.20177 -31.83562 -30.58357 -28.59614 -27.78835 -26.98526 -26.24439 -23.74439 -23.68397 -22.19327 -21.46609 -20.18221 -19.89594 -18.91654 -18.60457 -18.05322 -17.73865 -17.41855 -17.05518 -16.81052 -16.41841 -16.28066 -15.81364 -15.65648 -15.55941 -15.13606 -14.64671 -14.47011 -14.39131 -14.15147 -13.85592 -13.73218 -13.49749 -13.41352 -13.33912 -13.32596 -13.01134 -12.83491 -12.82088 -12.57387 -12.43816 -12.34103 -12.20165 -12.14174 -11.79436 -11.62399 -11.51060 -11.20372 -10.88915 -10.79974 -9.84106 -9.68586 -9.05757 -8.48076 -6.16767 0.44563 0.55572 1.25200 1.36781 1.46127 1.52820 1.61727 1.82565 2.15636 2.18169 2.82961 3.14777 3.45916 3.54355 3.70421 3.90562 3.91500 4.00275 4.03137 4.14020 4.22946 4.30018 4.37985 4.44700 4.50879 4.54818 4.56144 4.62339 4.66352 4.73579 4.74191 4.79818 4.90541 4.99000 5.02052 5.10971 5.12362 5.22624 5.31689 5.45675 5.51996 5.58148 5.65938 5.69199 6.00444 6.11928 6.36123 6.79740 6.96179 7.16815 7.73883 8.74270 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.001530 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.108953 B =18292.506584 C =18833.594097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.066 3.934 4 C 0.498 3.502 5 O -0.595 6.595 6 C -0.130 4.130 7 C -0.090 4.090 8 C -0.105 4.105 9 C 0.454 3.546 10 O -0.548 6.548 11 O -0.358 6.358 12 C 0.129 3.871 13 C -0.182 4.182 14 C -0.042 4.042 15 C -0.205 4.205 16 C 0.125 3.875 17 O -0.226 6.226 18 C -0.417 4.417 19 H 0.104 0.896 20 C -0.019 4.019 21 N -0.917 5.917 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.244 4.244 27 C -0.044 4.044 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.274 0.726 45 H 0.125 0.875 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.363 17.296 1.189 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.076 4.076 4 C 0.288 3.712 5 O -0.475 6.475 6 C -0.169 4.169 7 C -0.129 4.129 8 C -0.142 4.142 9 C 0.299 3.701 10 O -0.438 6.438 11 O -0.275 6.275 12 C 0.056 3.944 13 C -0.182 4.182 14 C -0.060 4.060 15 C -0.224 4.224 16 C 0.074 3.926 17 O -0.132 6.132 18 C -0.493 4.493 19 H 0.121 0.879 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.264 4.264 27 C -0.062 4.062 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.167 0.833 43 H 0.138 0.862 44 H 0.083 0.917 45 H 0.142 0.858 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.513 16.454 0.935 31.218 hybrid contribution 0.504 -0.589 0.485 0.915 sum -26.008 15.866 1.420 30.499 Atomic orbital electron populations 1.21684 0.79301 1.03259 1.02067 1.47992 1.07622 1.07292 1.72985 1.22184 0.98416 0.83555 1.03404 1.21454 0.91895 0.82909 0.74930 1.90718 1.71753 1.33169 1.51903 1.21717 0.89386 0.98116 1.07657 1.21051 0.92635 0.96361 1.02827 1.21535 0.95548 0.88297 1.08787 1.24607 0.80090 0.94272 0.71115 1.90676 1.57466 1.48542 1.47153 1.86626 1.25906 1.31507 1.83422 1.21609 0.90342 0.79191 1.03221 1.19256 0.93629 1.11905 0.93453 1.20892 0.91853 0.94840 0.98391 1.20447 0.94631 1.11696 0.95630 1.19996 0.84210 0.93049 0.95343 1.83947 1.15089 1.80443 1.33745 1.21823 0.90591 1.53299 0.83601 0.87860 1.26591 0.95819 0.95633 1.03718 1.70171 1.07192 1.48223 1.29885 0.84650 0.76923 0.79949 0.74730 1.18195 1.19658 1.18061 1.21248 0.95386 1.12142 0.97589 1.20951 0.92395 0.94528 0.98282 0.92630 0.88491 0.92953 0.87989 0.90516 0.90721 0.85255 0.85181 0.92907 0.92966 0.84584 0.84513 0.90352 0.90099 0.83305 0.86216 0.91738 0.85751 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.48 127.77 1.34 2.17 16 2 N -0.63 -6.74 3.27 -871.90 -2.85 -9.60 16 3 C 0.07 0.10 10.60 127.77 1.35 1.46 16 4 C 0.50 8.32 7.67 87.65 0.67 9.00 16 5 O -0.59 -16.63 15.56 -3.06 -0.05 -16.67 16 6 C -0.13 -1.08 4.01 29.85 0.12 -0.96 16 7 C -0.09 -1.44 3.79 30.60 0.12 -1.32 16 8 C -0.10 -1.30 5.81 29.85 0.17 -1.12 16 9 C 0.45 10.52 7.96 71.24 0.57 11.08 16 10 O -0.55 -16.69 15.73 21.98 0.35 -16.35 16 11 O -0.36 -9.17 10.20 -51.43 -0.52 -9.70 16 12 C 0.13 3.46 5.59 71.24 0.40 3.86 16 13 C -0.18 -5.80 5.52 -19.83 -0.11 -5.91 16 14 C -0.04 -1.39 9.69 22.25 0.22 -1.18 16 15 C -0.20 -8.51 9.99 22.39 0.22 -8.29 16 16 C 0.13 6.11 6.65 22.58 0.15 6.26 16 17 O -0.23 -13.38 9.76 -22.68 -0.22 -13.60 16 18 C -0.42 -23.81 9.49 67.92 0.64 -23.16 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.08 5.49 84.83 0.47 -0.62 16 21 N -0.92 -55.29 13.67 21.61 0.30 -55.00 16 22 Si 1.02 41.80 29.55 68.60 2.03 43.82 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 C -0.24 -10.41 9.17 22.39 0.21 -10.20 16 27 C -0.04 -1.49 9.69 22.25 0.22 -1.28 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 30 H 0.05 0.81 7.42 -2.39 -0.02 0.79 16 31 H 0.10 -0.22 5.77 -2.39 -0.01 -0.23 16 32 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.13 0.30 7.79 -2.39 -0.02 0.29 16 35 H 0.13 0.29 7.79 -2.39 -0.02 0.27 16 36 H 0.05 1.13 8.06 -2.39 -0.02 1.11 16 37 H 0.05 1.12 8.06 -2.39 -0.02 1.10 16 38 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 2.00 8.08 -2.39 -0.02 1.99 16 41 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 42 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 44 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 45 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 46 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -84.82 393.82 6.76 -78.06 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.99 Total: 19.24 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 6.75 Total: -20.22 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -2.56 Total: -64.59 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.45 Total: -56.32 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -84.82 6.76 -78.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785834203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.107 kcal (2) G-P(sol) polarization free energy of solvation -84.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds