Wall clock time and date at job start Tue Mar 31 2020 19:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99600 * 2 1 4 4 C 1.50697 * 109.54586 * 304.63808 * 3 2 1 5 5 O 1.21278 * 120.00235 * 140.07074 * 4 3 2 6 6 N 1.34783 * 120.00027 * 320.07996 * 4 3 2 7 7 C 1.46493 * 120.00120 * 185.00310 * 6 4 3 8 8 C 1.50701 * 109.47129 * 179.97438 * 7 6 4 9 9 C 1.38308 * 119.92919 * 89.99689 * 8 7 6 10 10 C 1.38105 * 120.06819 * 180.02562 * 9 8 7 11 11 C 1.38877 * 119.93069 * 359.97438 * 10 9 8 12 12 O 1.35751 * 120.07056 * 179.97438 * 11 10 9 13 13 C 1.34829 * 116.99702 * 354.36937 * 12 11 10 14 14 H 1.08001 * 120.00546 * 5.05877 * 13 12 11 15 15 C 1.38652 * 119.99944 * 185.06763 * 13 12 11 16 16 N 1.31554 * 120.00017 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00187 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47016 * 59.99853 * 17 15 13 19 19 H 1.48499 * 109.47328 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47112 * 300.00018 * 17 15 13 21 21 C 1.38882 * 119.85946 * 0.27217 * 11 10 9 22 22 C 1.38101 * 119.93283 * 359.49120 * 21 11 10 23 23 C 1.53180 * 109.61817 * 64.86338 * 3 2 1 24 24 C 1.53086 * 109.16564 * 176.89267 * 23 3 2 25 25 O 1.42907 * 109.41402 * 302.39217 * 24 23 3 26 26 C 1.42902 * 114.10079 * 61.15507 * 25 24 23 27 27 C 1.53090 * 109.41370 * 298.84725 * 26 25 24 28 28 H 1.09004 * 109.47300 * 304.94836 * 1 2 3 29 29 H 1.08997 * 109.47593 * 64.95691 * 1 2 3 30 30 H 1.08998 * 109.46844 * 184.95279 * 1 2 3 31 31 H 0.97001 * 119.99555 * 4.99416 * 6 4 3 32 32 H 1.09001 * 109.47718 * 59.99526 * 7 6 4 33 33 H 1.09004 * 109.46788 * 299.99119 * 7 6 4 34 34 H 1.08002 * 119.96583 * 0.02562 * 9 8 7 35 35 H 1.07996 * 120.03422 * 179.97438 * 10 9 8 36 36 H 0.97002 * 120.00137 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.03128 * 179.73227 * 21 11 10 38 38 H 1.07997 * 119.96271 * 180.23633 * 22 21 11 39 39 H 1.09003 * 109.51729 * 296.79587 * 23 3 2 40 40 H 1.08994 * 109.52291 * 56.97971 * 23 3 2 41 41 H 1.08995 * 109.48282 * 182.40623 * 24 23 3 42 42 H 1.09007 * 109.49477 * 62.37588 * 24 23 3 43 43 H 1.09000 * 109.48045 * 178.86101 * 26 25 24 44 44 H 1.08998 * 109.48694 * 58.83426 * 26 25 24 45 45 H 1.09007 * 109.52242 * 297.69857 * 27 26 25 46 46 H 1.09004 * 109.52243 * 177.51781 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4777 2.0944 -1.1684 5 8 1.2054 3.2685 -1.0338 6 7 1.3041 1.4951 -2.3631 7 6 0.8915 2.2850 -3.5258 8 6 0.7702 1.3841 -4.7278 9 6 -0.4352 0.7671 -5.0089 10 6 -0.5494 -0.0595 -6.1094 11 6 0.5477 -0.2705 -6.9343 12 8 0.4388 -1.0828 -8.0165 13 6 -0.7252 -1.7457 -8.1695 14 1 -1.5474 -1.5561 -7.4954 15 6 -0.8668 -2.6711 -9.1923 16 7 0.1346 -2.9019 -10.0137 17 14 -2.4792 -3.5901 -9.4039 18 1 -3.5751 -2.6176 -9.6458 19 1 -2.3740 -4.5145 -10.5614 20 1 -2.7707 -4.3683 -8.1732 21 6 1.7582 0.3465 -6.6464 22 6 1.8646 1.1758 -5.5472 23 6 1.6593 2.0246 1.3062 24 6 2.3503 3.3905 1.3292 25 8 3.7612 3.2115 1.1898 26 6 4.1520 2.5866 -0.0345 27 6 3.5333 1.1884 -0.1123 28 1 -0.3634 0.5887 0.8424 29 1 -0.3634 0.4350 -0.9310 30 1 -0.3633 -1.0238 0.0887 31 1 1.4524 0.5407 -2.4530 32 1 1.6358 3.0563 -3.7239 33 1 -0.0720 2.7531 -3.3236 34 1 -1.2882 0.9318 -4.3672 35 1 -1.4908 -0.5414 -6.3282 36 1 0.0354 -3.5490 -10.7295 37 1 2.6143 0.1810 -7.2836 38 1 2.8046 1.6589 -5.3250 39 1 0.5797 2.1615 1.3680 40 1 2.0009 1.4292 2.1529 41 1 2.1389 3.8890 2.2752 42 1 1.9782 4.0003 0.5059 43 1 5.2384 2.5059 -0.0709 44 1 3.8035 3.1856 -0.8759 45 1 3.9128 0.5761 0.7058 46 1 3.7939 0.7272 -1.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786081489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:11 Heat of formation + Delta-G solvation = -123.315323 kcal Electronic energy + Delta-G solvation = -29208.571216 eV Core-core repulsion = 25064.477377 eV Total energy + Delta-G solvation = -4144.093839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32986 -39.26729 -38.36128 -37.69622 -36.90081 -34.59671 -32.83517 -32.41824 -31.42795 -30.35465 -30.00871 -27.33753 -26.32150 -25.32669 -24.32923 -23.74117 -22.14971 -22.08560 -20.72230 -19.90661 -18.13276 -17.96016 -17.30873 -16.89802 -16.40103 -16.05736 -15.79011 -15.52599 -15.05602 -14.92333 -14.71806 -14.60704 -14.27270 -14.12499 -13.87126 -13.75602 -13.50243 -13.40224 -12.84910 -12.78594 -12.64550 -12.60671 -12.20716 -11.98707 -11.74592 -11.70162 -11.44567 -11.29874 -11.00658 -10.87379 -10.84231 -10.76505 -10.54125 -10.43154 -9.87972 -9.48646 -9.35780 -9.08997 -8.93999 -8.34822 -7.38407 -6.56974 -4.16119 1.98436 2.07041 2.30599 3.01857 3.06144 3.09469 3.10198 3.32041 3.68479 3.86835 4.23717 4.34743 4.40600 4.57152 4.64932 4.97039 4.97298 4.97791 5.05211 5.09621 5.10941 5.16246 5.24349 5.29166 5.32470 5.43220 5.46950 5.52276 5.58235 5.68748 5.69784 5.71811 5.76312 5.89495 6.06224 6.28089 6.40064 6.53534 6.62246 6.74063 6.89727 6.96684 7.07613 7.20262 7.29742 7.42634 7.65532 7.87272 8.02564 8.88047 9.55500 10.60317 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.002332 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.624277 B =12003.064692 C =12441.406009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.366 6.366 3 C 0.101 3.899 4 C 0.491 3.509 5 O -0.536 6.536 6 N -0.710 5.710 7 C 0.177 3.823 8 C -0.217 4.217 9 C -0.050 4.050 10 C -0.236 4.236 11 C 0.161 3.839 12 O -0.172 6.172 13 C -0.395 4.395 14 H 0.093 0.907 15 C 0.041 3.959 16 N -0.859 5.859 17 Si 0.942 3.058 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.195 4.195 22 C -0.054 4.054 23 C -0.161 4.161 24 C 0.043 3.957 25 O -0.382 6.382 26 C 0.062 3.938 27 C -0.139 4.139 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.272 0.728 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.093 0.907 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 7.363 19.645 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.285 6.285 3 C 0.058 3.942 4 C 0.276 3.724 5 O -0.415 6.415 6 N -0.362 5.362 7 C 0.055 3.945 8 C -0.219 4.219 9 C -0.069 4.069 10 C -0.256 4.256 11 C 0.106 3.894 12 O -0.074 6.074 13 C -0.471 4.471 14 H 0.110 0.890 15 C -0.164 4.164 16 N -0.492 5.492 17 Si 0.766 3.234 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.214 4.214 22 C -0.072 4.072 23 C -0.199 4.199 24 C -0.033 4.033 25 O -0.301 6.301 26 C -0.015 4.015 27 C -0.177 4.177 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.243 0.757 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.102 7.876 19.431 21.195 hybrid contribution -1.331 -0.996 -0.432 1.718 sum 1.771 6.880 18.998 20.283 Atomic orbital electron populations 1.22980 0.80469 1.03583 1.00967 1.88018 1.20319 1.25324 1.94843 1.21848 0.95409 0.83780 0.93115 1.21207 0.78225 0.88206 0.84805 1.90579 1.50774 1.16481 1.83631 1.46496 1.67908 1.13110 1.08677 1.20039 1.00078 0.92248 0.82148 1.19165 0.95399 1.07418 0.99875 1.20620 0.95919 0.94629 0.95729 1.21151 0.99968 1.05783 0.98679 1.19436 0.93084 0.90124 0.86738 1.83978 1.37729 1.49752 1.35945 1.21310 0.89518 1.20242 1.15996 0.88963 1.25321 0.99382 0.96533 0.95167 1.70022 1.30890 1.32506 1.15824 0.85762 0.79964 0.79158 0.78477 1.19412 1.20165 1.19399 1.20218 0.96443 1.03879 1.00847 1.20513 0.96962 0.96174 0.93591 1.22572 1.02254 0.98534 0.96546 1.23073 0.80494 0.95595 1.04146 1.87895 1.23185 1.80282 1.38699 1.22571 1.00199 0.91032 0.87656 1.22203 0.90745 0.99758 1.05032 0.93398 0.93170 0.88696 0.75697 0.91443 0.91449 0.87516 0.85405 0.91763 0.86326 0.86990 0.90257 0.89738 0.89138 0.88628 0.87944 0.92664 0.88892 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.29 101.05 1.04 1.19 16 2 O -0.37 -3.90 9.80 -35.23 -0.35 -4.25 16 3 C 0.10 1.07 0.81 -91.59 -0.07 0.99 16 4 C 0.49 5.98 4.42 -10.98 -0.05 5.93 16 5 O -0.54 -7.72 13.17 5.56 0.07 -7.65 16 6 N -0.71 -8.53 4.64 -61.47 -0.29 -8.81 16 7 C 0.18 2.32 5.80 -5.20 -0.03 2.29 16 8 C -0.22 -3.34 5.25 -104.57 -0.55 -3.89 16 9 C -0.05 -0.84 9.69 -39.60 -0.38 -1.22 16 10 C -0.24 -4.78 9.17 -39.39 -0.36 -5.14 16 11 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 12 O -0.17 -4.69 9.76 0.05 0.00 -4.69 16 13 C -0.39 -10.58 9.49 30.89 0.29 -10.29 16 14 H 0.09 2.27 5.21 -52.49 -0.27 2.00 16 15 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 17 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 21 C -0.19 -3.82 9.99 -39.39 -0.39 -4.22 16 22 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 23 C -0.16 -1.58 4.55 -26.59 -0.12 -1.70 16 24 C 0.04 0.45 6.54 37.20 0.24 0.70 16 25 O -0.38 -4.33 10.77 -35.23 -0.38 -4.71 16 26 C 0.06 0.61 6.61 37.20 0.25 0.85 16 27 C -0.14 -1.31 5.28 -26.59 -0.14 -1.45 16 28 H 0.05 0.39 6.41 -51.93 -0.33 0.06 16 29 H 0.05 0.50 6.62 -51.93 -0.34 0.16 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.41 4.79 7.98 -40.82 -0.33 4.46 16 32 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.08 0.75 6.72 -51.93 -0.35 0.40 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.18 5.22 -51.93 -0.27 0.90 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.60 7.19 -51.93 -0.37 0.22 16 45 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -30.26 370.90 -6.98 -37.24 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.34 Total: 8.98 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.02 Total: -12.80 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.47 Total: -32.44 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.65 Total: -21.29 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.26 -6.98 -37.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786081489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.077 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds