Wall clock time and date at job start Tue Mar 31 2020 19:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99600 * 2 1 4 4 C 1.50697 * 109.54586 * 304.63808 * 3 2 1 5 5 O 1.21278 * 120.00235 * 140.07074 * 4 3 2 6 6 N 1.34783 * 120.00027 * 320.07996 * 4 3 2 7 7 C 1.46493 * 120.00120 * 185.00310 * 6 4 3 8 8 C 1.50701 * 109.47129 * 179.97438 * 7 6 4 9 9 C 1.38308 * 119.92919 * 89.99689 * 8 7 6 10 10 C 1.38105 * 120.06819 * 180.02562 * 9 8 7 11 11 C 1.38877 * 119.93069 * 359.97438 * 10 9 8 12 12 O 1.35751 * 120.07056 * 179.97438 * 11 10 9 13 13 C 1.34829 * 116.99702 * 354.36937 * 12 11 10 14 14 H 1.08001 * 120.00546 * 5.05877 * 13 12 11 15 15 C 1.38652 * 119.99944 * 185.06763 * 13 12 11 16 16 N 1.31554 * 120.00017 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00187 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47016 * 59.99853 * 17 15 13 19 19 H 1.48499 * 109.47328 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47112 * 300.00018 * 17 15 13 21 21 C 1.38882 * 119.85946 * 0.27217 * 11 10 9 22 22 C 1.38101 * 119.93283 * 359.49120 * 21 11 10 23 23 C 1.53180 * 109.61817 * 64.86338 * 3 2 1 24 24 C 1.53086 * 109.16564 * 176.89267 * 23 3 2 25 25 O 1.42907 * 109.41402 * 302.39217 * 24 23 3 26 26 C 1.42902 * 114.10079 * 61.15507 * 25 24 23 27 27 C 1.53090 * 109.41370 * 298.84725 * 26 25 24 28 28 H 1.09004 * 109.47300 * 304.94836 * 1 2 3 29 29 H 1.08997 * 109.47593 * 64.95691 * 1 2 3 30 30 H 1.08998 * 109.46844 * 184.95279 * 1 2 3 31 31 H 0.97001 * 119.99555 * 4.99416 * 6 4 3 32 32 H 1.09001 * 109.47718 * 59.99526 * 7 6 4 33 33 H 1.09004 * 109.46788 * 299.99119 * 7 6 4 34 34 H 1.08002 * 119.96583 * 0.02562 * 9 8 7 35 35 H 1.07996 * 120.03422 * 179.97438 * 10 9 8 36 36 H 0.97002 * 120.00137 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.03128 * 179.73227 * 21 11 10 38 38 H 1.07997 * 119.96271 * 180.23633 * 22 21 11 39 39 H 1.09003 * 109.51729 * 296.79587 * 23 3 2 40 40 H 1.08994 * 109.52291 * 56.97971 * 23 3 2 41 41 H 1.08995 * 109.48282 * 182.40623 * 24 23 3 42 42 H 1.09007 * 109.49477 * 62.37588 * 24 23 3 43 43 H 1.09000 * 109.48045 * 178.86101 * 26 25 24 44 44 H 1.08998 * 109.48694 * 58.83426 * 26 25 24 45 45 H 1.09007 * 109.52242 * 297.69857 * 27 26 25 46 46 H 1.09004 * 109.52243 * 177.51781 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4777 2.0944 -1.1684 5 8 1.2054 3.2685 -1.0338 6 7 1.3041 1.4951 -2.3631 7 6 0.8915 2.2850 -3.5258 8 6 0.7702 1.3841 -4.7278 9 6 -0.4352 0.7671 -5.0089 10 6 -0.5494 -0.0595 -6.1094 11 6 0.5477 -0.2705 -6.9343 12 8 0.4388 -1.0828 -8.0165 13 6 -0.7252 -1.7457 -8.1695 14 1 -1.5474 -1.5561 -7.4954 15 6 -0.8668 -2.6711 -9.1923 16 7 0.1346 -2.9019 -10.0137 17 14 -2.4792 -3.5901 -9.4039 18 1 -3.5751 -2.6176 -9.6458 19 1 -2.3740 -4.5145 -10.5614 20 1 -2.7707 -4.3683 -8.1732 21 6 1.7582 0.3465 -6.6464 22 6 1.8646 1.1758 -5.5472 23 6 1.6593 2.0246 1.3062 24 6 2.3503 3.3905 1.3292 25 8 3.7612 3.2115 1.1898 26 6 4.1520 2.5866 -0.0345 27 6 3.5333 1.1884 -0.1123 28 1 -0.3634 0.5887 0.8424 29 1 -0.3634 0.4350 -0.9310 30 1 -0.3633 -1.0238 0.0887 31 1 1.4524 0.5407 -2.4530 32 1 1.6358 3.0563 -3.7239 33 1 -0.0720 2.7531 -3.3236 34 1 -1.2882 0.9318 -4.3672 35 1 -1.4908 -0.5414 -6.3282 36 1 0.0354 -3.5490 -10.7295 37 1 2.6143 0.1810 -7.2836 38 1 2.8046 1.6589 -5.3250 39 1 0.5797 2.1615 1.3680 40 1 2.0009 1.4292 2.1529 41 1 2.1389 3.8890 2.2752 42 1 1.9782 4.0003 0.5059 43 1 5.2384 2.5059 -0.0709 44 1 3.8035 3.1856 -0.8759 45 1 3.9128 0.5761 0.7058 46 1 3.7939 0.7272 -1.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786081489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:10 Heat of formation + Delta-G solvation = -144.161098 kcal Electronic energy + Delta-G solvation = -29209.475156 eV Core-core repulsion = 25064.477377 eV Total energy + Delta-G solvation = -4144.997779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21414 -40.85090 -39.37400 -38.54698 -38.39408 -35.77297 -34.29238 -33.62535 -32.22699 -31.85951 -31.38164 -28.09329 -27.80293 -26.81824 -25.33088 -24.52365 -23.67064 -23.06399 -22.12090 -20.88816 -19.88284 -18.93096 -18.75966 -17.94765 -17.26423 -16.98223 -16.74612 -16.49036 -16.34884 -16.29848 -15.99792 -15.61476 -15.56137 -15.40339 -15.26772 -14.88306 -14.61972 -14.46695 -14.33893 -14.06794 -13.67425 -13.44899 -13.35468 -13.31590 -13.03268 -12.73378 -12.57072 -12.44714 -12.40418 -12.25749 -12.15737 -12.06797 -11.65232 -11.22905 -11.21585 -10.82720 -10.67791 -10.28547 -10.09910 -9.83071 -9.02297 -8.49153 -6.17610 0.51548 0.55831 1.35179 1.35275 1.44759 1.51055 2.06635 2.16551 2.50872 2.82100 2.93904 3.14606 3.43654 3.47193 3.57348 3.66854 3.85257 3.90405 3.99820 4.14869 4.22979 4.27937 4.34258 4.37630 4.41537 4.51465 4.54345 4.55927 4.68029 4.72164 4.74257 4.77964 4.82945 4.95607 4.97605 5.01454 5.04852 5.12473 5.24142 5.41008 5.50268 5.67476 5.71789 5.84162 6.00093 6.13869 6.18980 6.43843 6.95510 7.05604 7.74419 8.73379 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.002332 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.624277 B =12003.064692 C =12441.406009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.373 6.373 3 C 0.102 3.898 4 C 0.494 3.506 5 O -0.557 6.557 6 N -0.707 5.707 7 C 0.183 3.817 8 C -0.184 4.184 9 C -0.046 4.046 10 C -0.244 4.244 11 C 0.123 3.877 12 O -0.228 6.228 13 C -0.415 4.415 14 H 0.104 0.896 15 C -0.021 4.021 16 N -0.919 5.919 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.256 1.256 21 C -0.204 4.204 22 C -0.043 4.043 23 C -0.158 4.158 24 C 0.043 3.957 25 O -0.395 6.395 26 C 0.060 3.940 27 C -0.138 4.138 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.109 0.891 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.115 0.885 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.042 0.958 45 H 0.101 0.899 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 8.248 22.598 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.292 6.292 3 C 0.059 3.941 4 C 0.280 3.720 5 O -0.436 6.436 6 N -0.358 5.358 7 C 0.060 3.940 8 C -0.185 4.185 9 C -0.064 4.064 10 C -0.263 4.263 11 C 0.072 3.928 12 O -0.134 6.134 13 C -0.491 4.491 14 H 0.121 0.879 15 C -0.219 4.219 16 N -0.556 5.556 17 Si 0.836 3.164 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.181 1.181 21 C -0.224 4.224 22 C -0.062 4.062 23 C -0.196 4.196 24 C -0.033 4.033 25 O -0.314 6.314 26 C -0.016 4.016 27 C -0.176 4.176 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.247 0.753 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.141 0.859 44 H 0.060 0.940 45 H 0.120 0.880 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.637 8.798 22.441 24.248 hybrid contribution -1.063 -0.982 -1.033 1.778 sum 1.574 7.816 21.409 22.845 Atomic orbital electron populations 1.23107 0.79767 1.04679 1.00902 1.88022 1.21122 1.25211 1.94818 1.21885 0.96021 0.83643 0.92543 1.21491 0.77542 0.87951 0.84991 1.90593 1.51587 1.17499 1.83961 1.46334 1.67963 1.13132 1.08406 1.19956 1.00926 0.91751 0.81326 1.19482 0.94327 1.05116 0.99610 1.20928 0.97580 0.93246 0.94663 1.21240 0.99017 1.06543 0.99473 1.19999 0.95098 0.90671 0.87040 1.83949 1.38415 1.52316 1.38753 1.21791 0.90048 1.20685 1.16550 0.87907 1.26574 1.03359 0.97331 0.94611 1.70169 1.33681 1.34425 1.17351 0.84670 0.75131 0.77812 0.78789 1.18187 1.19753 1.18063 1.20458 0.95517 1.04375 1.02024 1.20879 0.98760 0.94664 0.91853 1.22562 1.02410 0.98171 0.96465 1.23070 0.80235 0.95845 1.04199 1.87883 1.23570 1.80550 1.39350 1.22685 1.01456 0.90813 0.86675 1.22229 0.89898 0.99681 1.05759 0.92472 0.94017 0.87307 0.75309 0.90483 0.90892 0.84398 0.86183 0.91770 0.86667 0.83410 0.89958 0.88778 0.87625 0.90524 0.85914 0.93979 0.88034 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.29 113.37 1.17 1.34 16 2 O -0.37 -6.90 9.80 -148.98 -1.46 -8.36 16 3 C 0.10 1.87 0.81 -11.42 -0.01 1.87 16 4 C 0.49 10.71 4.42 87.66 0.39 11.10 16 5 O -0.56 -14.74 13.17 -3.02 -0.04 -14.78 16 6 N -0.71 -14.66 4.64 -466.79 -2.16 -16.82 16 7 C 0.18 4.10 5.80 85.63 0.50 4.60 16 8 C -0.18 -5.06 5.25 -19.83 -0.10 -5.17 16 9 C -0.05 -1.41 9.69 22.25 0.22 -1.20 16 10 C -0.24 -9.81 9.17 22.39 0.21 -9.61 16 11 C 0.12 5.76 6.65 22.58 0.15 5.91 16 12 O -0.23 -13.23 9.76 -22.74 -0.22 -13.45 16 13 C -0.41 -23.32 9.49 67.92 0.64 -22.67 16 14 H 0.10 5.25 5.21 -2.91 -0.02 5.24 16 15 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 16 N -0.92 -55.12 13.67 21.61 0.30 -54.83 16 17 Si 1.02 41.49 29.55 68.60 2.03 43.52 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 C -0.20 -8.04 9.99 22.39 0.22 -7.81 16 22 C -0.04 -1.29 9.69 22.25 0.22 -1.07 16 23 C -0.16 -2.70 4.55 30.68 0.14 -2.56 16 24 C 0.04 0.81 6.54 72.01 0.47 1.28 16 25 O -0.39 -8.12 10.77 -148.98 -1.60 -9.72 16 26 C 0.06 1.03 6.61 72.01 0.48 1.51 16 27 C -0.14 -2.22 5.28 30.68 0.16 -2.05 16 28 H 0.06 0.78 6.41 -2.38 -0.02 0.76 16 29 H 0.04 0.72 6.62 -2.39 -0.02 0.70 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.41 8.29 7.98 -92.71 -0.74 7.55 16 32 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 33 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 36 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.08 1.35 6.72 -2.39 -0.02 1.33 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.77 5.22 -2.38 -0.01 1.76 16 43 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.04 0.83 7.19 -2.39 -0.02 0.81 16 45 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -69.66 370.90 2.42 -67.25 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.28 Total: 32.41 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 5.31 Total: -25.21 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.87 Total: -71.65 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -3.33 Total: -46.31 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.66 2.42 -67.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786081489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.915 kcal (2) G-P(sol) polarization free energy of solvation -69.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds