Wall clock time and date at job start Tue Mar 31 2020 19:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99799 * 2 1 4 4 C 1.53001 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47294 * 185.00023 * 4 3 2 6 6 N 1.46496 * 109.47103 * 64.99519 * 4 3 2 7 7 C 1.34783 * 119.99746 * 154.99966 * 6 4 3 8 8 O 1.21589 * 119.99849 * 0.02562 * 7 6 4 9 9 C 1.47533 * 119.99742 * 180.02562 * 7 6 4 10 10 C 1.39665 * 120.20104 * 0.20727 * 9 7 6 11 11 C 1.37832 * 119.92165 * 180.21182 * 10 9 7 12 12 C 1.38571 * 120.32321 * 359.81079 * 11 10 9 13 13 C 1.38025 * 120.40114 * 0.02562 * 12 11 10 14 14 C 1.38841 * 120.07151 * 359.95886 * 13 12 11 15 15 O 1.35522 * 120.16048 * 180.02562 * 14 13 12 16 16 C 1.34820 * 116.99916 * 5.56674 * 15 14 13 17 17 H 1.07997 * 120.00067 * 354.63214 * 16 15 14 18 18 C 1.38702 * 119.99721 * 174.90047 * 16 15 14 19 19 N 1.31520 * 119.99967 * 179.72679 * 18 16 15 20 20 Si 1.86803 * 120.00071 * 359.73282 * 18 16 15 21 21 H 1.48500 * 109.47158 * 89.99434 * 20 18 16 22 22 H 1.48497 * 109.46983 * 209.99594 * 20 18 16 23 23 H 1.48497 * 109.46962 * 329.99435 * 20 18 16 24 24 C 1.52999 * 109.46871 * 304.99860 * 4 3 2 25 25 H 1.08997 * 110.27759 * 59.30140 * 24 4 3 26 26 C 1.54947 * 110.30964 * 181.38892 * 24 4 3 27 27 C 1.55415 * 100.89328 * 155.28360 * 26 24 4 28 28 C 1.54377 * 102.31239 * 325.99605 * 27 26 24 29 29 O 1.43235 * 107.58901 * 21.28081 * 28 27 26 30 30 H 1.09005 * 109.46931 * 299.99978 * 1 2 3 31 31 H 1.09004 * 109.47354 * 60.00106 * 1 2 3 32 32 H 1.08998 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47190 * 59.99746 * 3 2 1 34 34 H 1.09001 * 109.46975 * 299.99786 * 3 2 1 35 35 H 0.97002 * 120.00150 * 335.00487 * 6 4 3 36 36 H 1.08000 * 120.03901 * 0.02562 * 10 9 7 37 37 H 1.07998 * 119.83951 * 179.79089 * 11 10 9 38 38 H 1.07995 * 119.79926 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.96677 * 179.97438 * 13 12 11 40 40 H 0.96999 * 120.00097 * 180.02562 * 19 18 16 41 41 H 1.08993 * 111.12887 * 273.28210 * 26 24 4 42 42 H 1.09007 * 111.12265 * 37.44446 * 26 24 4 43 43 H 1.09000 * 110.88453 * 207.75147 * 27 26 24 44 44 H 1.09000 * 110.92925 * 84.25670 * 27 26 24 45 45 H 1.08999 * 109.82891 * 261.76761 * 28 27 26 46 46 H 1.08993 * 109.83262 * 140.79723 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9785 2.1766 0.0889 6 7 3.9756 0.5645 -1.2527 7 6 5.2195 0.7947 -1.7178 8 8 5.9764 1.5168 -1.0981 9 6 5.6626 0.1704 -2.9790 10 6 4.7952 -0.6563 -3.6965 11 6 5.2167 -1.2400 -4.8718 12 6 6.4969 -1.0078 -5.3485 13 6 7.3640 -0.1905 -4.6520 14 6 6.9566 0.4063 -3.4664 15 8 7.8063 1.2096 -2.7813 16 6 8.9925 1.4820 -3.3613 17 1 9.2649 0.9974 -4.2872 18 6 9.8654 2.3805 -2.7659 19 7 11.0249 2.6422 -3.3288 20 14 9.3944 3.2187 -1.1643 21 1 9.8558 2.3935 -0.0192 22 1 10.0341 4.5573 -1.0994 23 1 7.9186 3.3718 -1.1012 24 6 3.9790 0.3195 1.1807 25 1 3.5330 -0.6726 1.1107 26 6 5.5243 0.2130 1.2190 27 6 5.7606 -0.0888 2.7251 28 6 4.6305 0.7151 3.4032 29 8 3.6131 0.9442 2.4214 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.3719 -0.0119 -1.7469 36 1 3.7964 -0.8403 -3.3292 37 1 4.5459 -1.8818 -5.4237 38 1 6.8185 -1.4699 -6.2701 39 1 8.3604 -0.0147 -5.0297 40 1 11.6355 3.2703 -2.9122 41 1 5.8773 -0.6061 0.5925 42 1 5.9903 1.1551 0.9301 43 1 6.7385 0.2712 3.0447 44 1 5.6555 -1.1542 2.9299 45 1 5.0190 1.6680 3.7626 46 1 4.2191 0.1445 4.2358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790278931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:57 Heat of formation + Delta-G solvation = -119.955196 kcal Electronic energy + Delta-G solvation = -30230.042194 eV Core-core repulsion = 26086.094061 eV Total energy + Delta-G solvation = -4143.948133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25594 -39.34658 -38.18613 -37.76111 -36.52947 -34.56069 -32.46216 -31.92039 -31.46079 -29.65996 -29.19833 -28.18577 -26.26809 -25.31256 -23.72976 -22.92285 -21.45133 -21.44666 -20.55984 -20.08992 -17.91806 -17.86398 -17.08585 -16.64920 -16.39117 -16.19338 -15.52454 -15.42559 -14.98849 -14.61786 -14.50567 -14.30455 -14.17146 -14.01683 -13.73077 -13.50702 -13.18878 -12.85570 -12.63146 -12.46935 -12.36408 -12.17603 -11.96395 -11.63414 -11.51838 -11.35942 -11.29236 -11.17182 -10.85251 -10.82626 -10.74506 -10.56198 -10.04307 -9.86923 -9.61649 -9.53760 -9.05595 -8.90427 -8.65231 -8.38588 -7.48745 -6.48128 -4.13348 1.56340 2.18519 3.25635 3.31531 3.34933 3.53118 3.64592 3.65934 4.06226 4.33599 4.49686 4.59201 4.69724 4.72575 4.95184 4.99769 5.08456 5.13049 5.15336 5.17757 5.28545 5.35041 5.37117 5.45004 5.46783 5.51736 5.62071 5.65139 5.72281 5.77554 5.90324 5.95185 6.03471 6.07518 6.21426 6.37185 6.54403 6.56427 6.74329 6.83030 6.95069 7.00517 7.10150 7.14392 7.47335 7.67042 7.93691 7.96467 8.84101 8.88437 9.50315 10.57051 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.004680 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.922399 B = 5981.197598 C = 7978.995757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.058 3.942 4 C 0.157 3.843 5 H 0.105 0.895 6 N -0.729 5.729 7 C 0.562 3.438 8 O -0.513 6.513 9 C -0.226 4.226 10 C -0.040 4.040 11 C -0.221 4.221 12 C -0.051 4.051 13 C -0.228 4.228 14 C 0.202 3.798 15 O -0.165 6.165 16 C -0.396 4.396 17 H 0.108 0.892 18 C 0.072 3.928 19 N -0.870 5.870 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.234 1.234 24 C 0.078 3.922 25 H 0.077 0.923 26 C -0.152 4.152 27 C -0.159 4.159 28 C 0.055 3.945 29 O -0.381 6.381 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.400 0.600 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.281 0.719 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 -6.053 6.585 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.019 4.019 4 C 0.051 3.949 5 H 0.123 0.877 6 N -0.385 5.385 7 C 0.352 3.648 8 O -0.389 6.389 9 C -0.231 4.231 10 C -0.059 4.059 11 C -0.240 4.240 12 C -0.069 4.069 13 C -0.247 4.247 14 C 0.144 3.856 15 O -0.065 6.065 16 C -0.471 4.471 17 H 0.125 0.875 18 C -0.133 4.133 19 N -0.506 5.506 20 Si 0.722 3.278 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.157 1.157 24 C 0.019 3.981 25 H 0.095 0.905 26 C -0.189 4.189 27 C -0.196 4.196 28 C -0.021 4.021 29 O -0.300 6.300 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.345 -5.289 7.336 19.562 hybrid contribution -0.201 0.020 0.209 0.291 sum -17.546 -5.270 7.545 19.814 Atomic orbital electron populations 1.22714 0.81103 1.02616 0.99914 1.87866 1.19606 1.27689 1.95425 1.22810 0.92689 0.85184 1.01240 1.20911 0.91864 0.98262 0.83850 0.87744 1.45795 1.15745 1.52847 1.24110 1.18201 0.80848 0.80784 0.84951 1.90806 1.52913 1.36815 1.58368 1.18824 0.94179 1.10477 0.99618 1.20795 0.97111 0.93947 0.94016 1.20544 0.97324 1.07023 0.99103 1.20968 0.93202 0.94943 0.97802 1.21287 1.02141 1.03580 0.97668 1.19016 0.88116 0.89030 0.89401 1.83772 1.25406 1.55584 1.41750 1.20920 0.90515 1.26297 1.09371 0.87506 1.24490 0.94073 0.95524 0.99261 1.69638 1.07802 1.33649 1.39508 0.86238 0.82055 0.77880 0.81626 1.20019 1.21364 1.15693 1.23288 0.94703 0.96228 0.83878 0.90524 1.23548 0.95144 1.05199 0.95016 1.23153 0.99503 1.00522 0.96452 1.23053 0.88277 0.99366 0.91441 1.88308 1.44065 1.76806 1.20857 0.94107 0.94155 0.89742 0.91273 0.92568 0.76395 0.86758 0.87026 0.86873 0.84466 0.90850 0.90390 0.87656 0.90177 0.91084 0.91551 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.29 9.57 -35.23 -0.34 -4.63 16 3 C 0.06 0.65 5.51 37.16 0.20 0.85 16 4 C 0.16 2.19 2.42 -67.93 -0.16 2.03 16 5 H 0.10 1.65 7.58 -51.93 -0.39 1.26 16 6 N -0.73 -10.74 4.96 -54.85 -0.27 -11.01 16 7 C 0.56 10.80 6.86 -12.47 -0.09 10.71 16 8 O -0.51 -11.78 11.75 -16.57 -0.19 -11.97 16 9 C -0.23 -4.45 5.89 -104.81 -0.62 -5.07 16 10 C -0.04 -0.63 9.54 -39.20 -0.37 -1.00 16 11 C -0.22 -3.38 10.03 -39.61 -0.40 -3.78 16 12 C -0.05 -0.85 10.03 -39.54 -0.40 -1.25 16 13 C -0.23 -4.73 9.16 -39.44 -0.36 -5.09 16 14 C 0.20 4.65 6.66 -38.60 -0.26 4.39 16 15 O -0.17 -4.41 6.67 -21.08 -0.14 -4.55 16 16 C -0.40 -11.15 9.95 30.90 0.31 -10.84 16 17 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 18 C 0.07 2.04 5.49 -17.51 -0.10 1.95 16 19 N -0.87 -25.12 13.96 55.48 0.77 -24.34 16 20 Si 0.90 22.71 28.62 -169.99 -4.86 17.85 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.23 -6.19 6.96 56.52 0.39 -5.80 16 24 C 0.08 1.11 2.95 -25.70 -0.08 1.03 16 25 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 26 C -0.15 -2.41 4.88 -24.42 -0.12 -2.53 16 27 C -0.16 -2.05 7.02 -24.73 -0.17 -2.22 16 28 C 0.06 0.68 7.80 37.88 0.30 0.97 16 29 O -0.38 -5.43 10.63 -35.23 -0.37 -5.80 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.40 5.02 6.41 -40.82 -0.26 4.76 16 36 H 0.11 1.40 6.40 -52.49 -0.34 1.06 16 37 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.14 2.97 5.64 -52.49 -0.30 2.67 16 40 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 1.32 7.95 -51.93 -0.41 0.90 16 42 H 0.11 2.00 5.99 -51.93 -0.31 1.69 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -31.76 373.01 -7.46 -39.22 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.47 Total: 8.08 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.20 Total: -8.46 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.50 Total: -35.35 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.05 Total: -26.95 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.86 Total: 17.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.76 -7.46 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790278931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.738 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds