Wall clock time and date at job start Tue Mar 31 2020 19:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99799 * 2 1 4 4 C 1.53001 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47294 * 185.00023 * 4 3 2 6 6 N 1.46496 * 109.47103 * 64.99519 * 4 3 2 7 7 C 1.34783 * 119.99746 * 154.99966 * 6 4 3 8 8 O 1.21589 * 119.99849 * 0.02562 * 7 6 4 9 9 C 1.47533 * 119.99742 * 180.02562 * 7 6 4 10 10 C 1.39665 * 120.20104 * 0.20727 * 9 7 6 11 11 C 1.37832 * 119.92165 * 180.21182 * 10 9 7 12 12 C 1.38571 * 120.32321 * 359.81079 * 11 10 9 13 13 C 1.38025 * 120.40114 * 0.02562 * 12 11 10 14 14 C 1.38841 * 120.07151 * 359.95886 * 13 12 11 15 15 O 1.35522 * 120.16048 * 180.02562 * 14 13 12 16 16 C 1.34820 * 116.99916 * 5.56674 * 15 14 13 17 17 H 1.07997 * 120.00067 * 354.63214 * 16 15 14 18 18 C 1.38702 * 119.99721 * 174.90047 * 16 15 14 19 19 N 1.31520 * 119.99967 * 179.72679 * 18 16 15 20 20 Si 1.86803 * 120.00071 * 359.73282 * 18 16 15 21 21 H 1.48500 * 109.47158 * 89.99434 * 20 18 16 22 22 H 1.48497 * 109.46983 * 209.99594 * 20 18 16 23 23 H 1.48497 * 109.46962 * 329.99435 * 20 18 16 24 24 C 1.52999 * 109.46871 * 304.99860 * 4 3 2 25 25 H 1.08997 * 110.27759 * 59.30140 * 24 4 3 26 26 C 1.54947 * 110.30964 * 181.38892 * 24 4 3 27 27 C 1.55415 * 100.89328 * 155.28360 * 26 24 4 28 28 C 1.54377 * 102.31239 * 325.99605 * 27 26 24 29 29 O 1.43235 * 107.58901 * 21.28081 * 28 27 26 30 30 H 1.09005 * 109.46931 * 299.99978 * 1 2 3 31 31 H 1.09004 * 109.47354 * 60.00106 * 1 2 3 32 32 H 1.08998 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47190 * 59.99746 * 3 2 1 34 34 H 1.09001 * 109.46975 * 299.99786 * 3 2 1 35 35 H 0.97002 * 120.00150 * 335.00487 * 6 4 3 36 36 H 1.08000 * 120.03901 * 0.02562 * 10 9 7 37 37 H 1.07998 * 119.83951 * 179.79089 * 11 10 9 38 38 H 1.07995 * 119.79926 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.96677 * 179.97438 * 13 12 11 40 40 H 0.96999 * 120.00097 * 180.02562 * 19 18 16 41 41 H 1.08993 * 111.12887 * 273.28210 * 26 24 4 42 42 H 1.09007 * 111.12265 * 37.44446 * 26 24 4 43 43 H 1.09000 * 110.88453 * 207.75147 * 27 26 24 44 44 H 1.09000 * 110.92925 * 84.25670 * 27 26 24 45 45 H 1.08999 * 109.82891 * 261.76761 * 28 27 26 46 46 H 1.08993 * 109.83262 * 140.79723 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9785 2.1766 0.0889 6 7 3.9756 0.5645 -1.2527 7 6 5.2195 0.7947 -1.7178 8 8 5.9764 1.5168 -1.0981 9 6 5.6626 0.1704 -2.9790 10 6 4.7952 -0.6563 -3.6965 11 6 5.2167 -1.2400 -4.8718 12 6 6.4969 -1.0078 -5.3485 13 6 7.3640 -0.1905 -4.6520 14 6 6.9566 0.4063 -3.4664 15 8 7.8063 1.2096 -2.7813 16 6 8.9925 1.4820 -3.3613 17 1 9.2649 0.9974 -4.2872 18 6 9.8654 2.3805 -2.7659 19 7 11.0249 2.6422 -3.3288 20 14 9.3944 3.2187 -1.1643 21 1 9.8558 2.3935 -0.0192 22 1 10.0341 4.5573 -1.0994 23 1 7.9186 3.3718 -1.1012 24 6 3.9790 0.3195 1.1807 25 1 3.5330 -0.6726 1.1107 26 6 5.5243 0.2130 1.2190 27 6 5.7606 -0.0888 2.7251 28 6 4.6305 0.7151 3.4032 29 8 3.6131 0.9442 2.4214 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.3719 -0.0119 -1.7469 36 1 3.7964 -0.8403 -3.3292 37 1 4.5459 -1.8818 -5.4237 38 1 6.8185 -1.4699 -6.2701 39 1 8.3604 -0.0147 -5.0297 40 1 11.6355 3.2703 -2.9122 41 1 5.8773 -0.6061 0.5925 42 1 5.9903 1.1551 0.9301 43 1 6.7385 0.2712 3.0447 44 1 5.6555 -1.1542 2.9299 45 1 5.0190 1.6680 3.7626 46 1 4.2191 0.1445 4.2358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790278931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:56 Heat of formation + Delta-G solvation = -141.849441 kcal Electronic energy + Delta-G solvation = -30230.991600 eV Core-core repulsion = 26086.094061 eV Total energy + Delta-G solvation = -4144.897539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63149 -40.75834 -39.56881 -38.71870 -38.12925 -35.85103 -34.50632 -33.08191 -32.80377 -30.96509 -30.77479 -29.12785 -27.32679 -26.94507 -25.01382 -24.14413 -23.01412 -22.55680 -21.87382 -21.45108 -19.80078 -19.43440 -18.29480 -17.91681 -17.66402 -17.17514 -16.70442 -16.42812 -16.31262 -16.03185 -15.97109 -15.78624 -15.49330 -15.44330 -15.22214 -15.11320 -14.46849 -14.25385 -14.07893 -14.00845 -13.73227 -13.41244 -13.14073 -12.96711 -12.82668 -12.71173 -12.58105 -12.37182 -12.30933 -12.21213 -12.01394 -11.95909 -11.69089 -11.47878 -10.96471 -10.71262 -10.67587 -10.50328 -10.01352 -9.81253 -9.13288 -8.57001 -6.25667 0.07116 0.66404 1.25812 1.29971 1.59136 1.97836 2.10071 2.29718 2.74883 2.81424 2.95303 3.02895 3.19434 3.50039 3.59810 3.90325 3.95124 4.02392 4.06545 4.14443 4.20623 4.27745 4.38008 4.48268 4.50904 4.52633 4.60387 4.64962 4.66132 4.68056 4.76592 4.82617 4.87315 4.94202 4.98516 5.01162 5.08287 5.27579 5.30789 5.48786 5.49596 5.63144 5.70943 5.84380 5.99840 6.16726 6.20144 6.65926 6.80306 7.42104 7.59856 8.53454 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.004680 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.922399 B = 5981.197598 C = 7978.995757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.069 3.931 4 C 0.153 3.847 5 H 0.080 0.920 6 N -0.705 5.705 7 C 0.558 3.442 8 O -0.555 6.555 9 C -0.231 4.231 10 C -0.031 4.031 11 C -0.190 4.190 12 C -0.043 4.043 13 C -0.251 4.251 14 C 0.164 3.836 15 O -0.206 6.206 16 C -0.401 4.401 17 H 0.090 0.910 18 C 0.026 3.974 19 N -0.913 5.913 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.259 1.259 24 C 0.089 3.911 25 H 0.084 0.916 26 C -0.156 4.156 27 C -0.154 4.154 28 C 0.052 3.948 29 O -0.390 6.390 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.285 0.715 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.589 -8.421 6.550 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.008 4.008 4 C 0.048 3.952 5 H 0.099 0.901 6 N -0.361 5.361 7 C 0.348 3.652 8 O -0.434 6.434 9 C -0.236 4.236 10 C -0.049 4.049 11 C -0.208 4.208 12 C -0.061 4.061 13 C -0.271 4.271 14 C 0.111 3.889 15 O -0.110 6.110 16 C -0.477 4.477 17 H 0.108 0.892 18 C -0.174 4.174 19 N -0.553 5.553 20 Si 0.777 3.223 21 H -0.202 1.202 22 H -0.196 1.196 23 H -0.183 1.183 24 C 0.030 3.970 25 H 0.102 0.898 26 C -0.194 4.194 27 C -0.192 4.192 28 C -0.024 4.024 29 O -0.309 6.309 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.253 0.747 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.167 0.833 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.956 -7.703 7.287 24.382 hybrid contribution 0.795 0.452 0.080 0.918 sum -21.161 -7.251 7.367 23.551 Atomic orbital electron populations 1.22914 0.79248 1.03876 1.00803 1.87828 1.21537 1.27181 1.95599 1.22638 0.90179 0.85759 1.02233 1.20965 0.94084 0.96928 0.83271 0.90148 1.45531 1.14233 1.52098 1.24218 1.18309 0.81769 0.80374 0.84776 1.90816 1.54465 1.38673 1.59444 1.19255 0.93520 1.10679 1.00100 1.21345 0.98258 0.91796 0.93538 1.21214 0.96715 1.04833 0.98023 1.21427 0.93254 0.93081 0.98346 1.21329 1.02341 1.05423 0.97978 1.19724 0.89289 0.89213 0.90687 1.83761 1.25464 1.58773 1.42992 1.20878 0.91678 1.26184 1.08969 0.89236 1.25033 0.94335 0.96480 1.01528 1.69687 1.08842 1.35736 1.41073 0.85430 0.79984 0.77790 0.79049 1.20159 1.19588 1.18269 1.23147 0.93144 0.96480 0.84214 0.89811 1.23413 0.96480 1.02601 0.96860 1.23163 0.99996 1.01820 0.94218 1.23216 0.87715 0.99935 0.91505 1.88284 1.44623 1.77058 1.20947 0.93634 0.92876 0.88344 0.90781 0.91091 0.74655 0.82051 0.81759 0.83283 0.86810 0.90544 0.92082 0.91333 0.90219 0.89296 0.91205 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.48 9.57 -148.98 -1.43 -8.90 16 3 C 0.07 1.36 5.51 71.98 0.40 1.76 16 4 C 0.15 4.14 2.42 44.99 0.11 4.25 16 5 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 6 N -0.70 -19.64 4.96 -445.71 -2.21 -21.85 16 7 C 0.56 21.55 6.86 86.69 0.60 22.15 16 8 O -0.56 -26.85 11.75 16.90 0.20 -26.65 16 9 C -0.23 -8.90 5.89 -19.99 -0.12 -9.02 16 10 C -0.03 -0.84 9.54 22.52 0.21 -0.62 16 11 C -0.19 -4.69 10.03 22.25 0.22 -4.47 16 12 C -0.04 -1.31 10.03 22.30 0.22 -1.08 16 13 C -0.25 -10.62 9.16 22.36 0.20 -10.42 16 14 C 0.16 7.81 6.66 22.91 0.15 7.96 16 15 O -0.21 -11.76 6.67 0.77 0.01 -11.76 16 16 C -0.40 -24.31 9.95 67.93 0.68 -23.63 16 17 H 0.09 5.52 5.44 -2.91 -0.02 5.50 16 18 C 0.03 1.59 5.49 84.85 0.47 2.06 16 19 N -0.91 -55.92 13.96 21.62 0.30 -55.62 16 20 Si 0.95 50.34 28.62 68.60 1.96 52.31 16 21 H -0.28 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.26 -14.53 6.96 99.48 0.69 -13.83 16 24 C 0.09 2.45 2.95 31.26 0.09 2.54 16 25 H 0.08 2.22 7.58 -2.39 -0.02 2.20 16 26 C -0.16 -5.06 4.88 32.09 0.16 -4.91 16 27 C -0.15 -3.89 7.02 31.89 0.22 -3.66 16 28 C 0.05 1.20 7.80 72.45 0.56 1.77 16 29 O -0.39 -10.53 10.63 -148.98 -1.58 -12.12 16 30 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.42 7.94 -2.39 -0.02 1.41 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.41 8.86 6.41 -92.71 -0.59 8.27 16 36 H 0.16 2.86 6.40 -2.91 -0.02 2.84 16 37 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.11 5.29 5.64 -2.91 -0.02 5.27 16 40 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 41 H 0.06 2.13 7.95 -2.39 -0.02 2.11 16 42 H 0.07 2.78 5.99 -2.38 -0.01 2.76 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -77.09 373.01 3.08 -74.02 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.40 Total: 24.33 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 5.43 Total: -13.75 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -1.91 Total: -77.47 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -2.81 Total: -59.43 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 1.96 Total: 52.31 kcal Total: -77.09 3.08 -74.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790278931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.834 kcal (2) G-P(sol) polarization free energy of solvation -77.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds