Wall clock time and date at job start Tue Mar 31 2020 19:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99841 * 2 1 4 4 C 1.52999 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46944 * 185.00347 * 4 3 2 6 6 N 1.46503 * 109.47016 * 65.00271 * 4 3 2 7 7 C 1.34773 * 119.99710 * 85.27757 * 6 4 3 8 8 O 1.21594 * 120.00276 * 359.71708 * 7 6 4 9 9 C 1.47541 * 119.99644 * 179.72461 * 7 6 4 10 10 C 1.39665 * 120.19671 * 359.71732 * 9 7 6 11 11 C 1.37830 * 119.91890 * 179.76511 * 10 9 7 12 12 C 1.38574 * 120.31790 * 0.51502 * 11 10 9 13 13 C 1.38025 * 120.40872 * 359.74170 * 12 11 10 14 14 C 1.38840 * 120.06713 * 359.97438 * 13 12 11 15 15 O 1.35520 * 120.15828 * 180.02562 * 14 13 12 16 16 C 1.34813 * 117.00171 * 354.40947 * 15 14 13 17 17 H 1.08002 * 119.99691 * 5.06035 * 16 15 14 18 18 C 1.38699 * 120.00254 * 185.06053 * 16 15 14 19 19 N 1.31521 * 119.99467 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47065 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46653 * 120.00211 * 20 18 16 23 23 H 1.48501 * 109.47178 * 240.00023 * 20 18 16 24 24 C 1.52995 * 109.47341 * 305.00098 * 4 3 2 25 25 H 1.08999 * 109.82520 * 300.70536 * 24 4 3 26 26 C 1.54382 * 109.83294 * 179.81408 * 24 4 3 27 27 C 1.55454 * 102.18560 * 219.18294 * 26 24 4 28 28 C 1.54941 * 100.98960 * 34.04006 * 27 26 24 29 29 O 1.43241 * 109.83026 * 61.58759 * 24 4 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46998 * 299.99499 * 1 2 3 32 32 H 1.08997 * 109.47128 * 59.99758 * 1 2 3 33 33 H 1.09001 * 109.46789 * 60.00502 * 3 2 1 34 34 H 1.08995 * 109.47368 * 300.00133 * 3 2 1 35 35 H 0.97001 * 119.99615 * 264.99488 * 6 4 3 36 36 H 1.07994 * 120.04009 * 0.02970 * 10 9 7 37 37 H 1.08000 * 119.83772 * 180.27387 * 11 10 9 38 38 H 1.08004 * 119.79595 * 179.75554 * 12 11 10 39 39 H 1.07998 * 119.96730 * 179.97438 * 13 12 11 40 40 H 0.97002 * 119.99372 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.84692 * 337.32070 * 26 24 4 42 42 H 1.08996 * 110.84609 * 100.93854 * 26 24 4 43 43 H 1.08998 * 111.05677 * 276.11933 * 27 26 24 44 44 H 1.09006 * 111.17961 * 152.00833 * 27 26 24 45 45 H 1.09002 * 110.30711 * 204.68671 * 28 27 26 46 46 H 1.08996 * 110.39438 * 82.56666 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 7 3.9757 0.5645 -1.2528 7 6 4.1698 1.3240 -2.3491 8 8 3.9746 2.5232 -2.3003 9 6 4.6189 0.7003 -3.6085 10 6 4.8499 -0.6759 -3.6675 11 6 5.2647 -1.2533 -4.8483 12 6 5.4645 -0.4733 -5.9761 13 6 5.2454 0.8887 -5.9313 14 6 4.8217 1.4867 -4.7521 15 8 4.6055 2.8238 -4.7062 16 6 4.9305 3.5344 -5.8048 17 1 5.2657 3.0263 -6.6969 18 6 4.8342 4.9180 -5.7894 19 7 4.4264 5.5366 -4.7028 20 14 5.2852 5.9026 -7.3113 21 1 5.7114 4.9770 -8.3914 22 1 4.1048 6.6814 -7.7646 23 1 6.3971 6.8322 -6.9880 24 6 3.9791 0.3194 1.1806 25 1 3.6435 0.7693 2.1150 26 6 5.5173 0.1881 1.1852 27 6 5.7187 -1.2960 1.6016 28 6 4.4901 -1.9603 0.9309 29 8 3.4308 -0.9976 1.0511 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 4.1313 -0.3922 -1.2916 36 1 4.6995 -1.2875 -2.7902 37 1 5.4386 -2.3183 -4.8937 38 1 5.7934 -0.9340 -6.8959 39 1 5.4037 1.4899 -6.8144 40 1 4.3587 6.5042 -4.6921 41 1 5.9251 0.3705 0.1909 42 1 5.9619 0.8618 1.9176 43 1 5.6826 -1.4070 2.6854 44 1 6.6498 -1.6951 1.1991 45 1 4.2261 -2.8805 1.4521 46 1 4.6962 -2.1670 -0.1193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790278956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:09 Heat of formation + Delta-G solvation = -117.315599 kcal Electronic energy + Delta-G solvation = -30193.232665 eV Core-core repulsion = 26049.398994 eV Total energy + Delta-G solvation = -4143.833671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.19081 -39.24277 -37.94617 -37.23865 -36.30409 -34.17983 -32.32760 -32.04548 -31.34844 -29.65006 -28.89221 -27.97887 -25.92222 -25.35510 -23.66060 -22.77442 -21.67512 -21.51358 -20.41444 -19.78655 -18.02199 -17.71933 -16.81650 -16.41921 -16.05824 -15.88481 -15.42486 -15.16646 -14.92143 -14.64548 -14.31623 -14.16342 -14.05049 -13.79420 -13.56345 -13.18666 -13.11282 -13.02538 -12.63752 -12.48362 -12.16442 -11.96679 -11.72793 -11.70582 -11.32761 -11.30823 -11.14872 -11.09431 -10.94415 -10.90235 -10.76352 -10.64778 -10.43734 -9.55600 -9.52256 -9.33840 -8.87347 -8.79513 -8.46999 -8.23870 -7.28693 -6.43610 -4.03190 1.74544 2.34244 3.12132 3.12842 3.18568 3.64857 3.75166 3.85141 3.94218 4.11543 4.42467 4.61607 4.67028 4.79929 5.03903 5.08945 5.13404 5.19828 5.30258 5.38651 5.47759 5.50640 5.52393 5.56200 5.61537 5.65180 5.67675 5.70464 5.74397 5.77921 5.81505 5.91616 6.00591 6.07144 6.14917 6.17688 6.59064 6.71794 6.93997 7.00985 7.08558 7.09915 7.26146 7.31255 7.43977 7.71778 7.93854 8.21311 8.96531 9.14264 9.69524 10.70397 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.003625 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.420166 B = 7721.669100 C = 8490.656880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.051 3.949 4 C 0.144 3.856 5 H 0.108 0.892 6 N -0.725 5.725 7 C 0.555 3.445 8 O -0.505 6.505 9 C -0.225 4.225 10 C -0.037 4.037 11 C -0.230 4.230 12 C -0.051 4.051 13 C -0.239 4.239 14 C 0.190 3.810 15 O -0.124 6.124 16 C -0.403 4.403 17 H 0.094 0.906 18 C 0.045 3.955 19 N -0.833 5.833 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.079 3.921 25 H 0.087 0.913 26 C -0.156 4.156 27 C -0.156 4.156 28 C 0.045 3.955 29 O -0.346 6.346 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.395 0.605 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.270 0.730 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 -13.142 10.643 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.027 4.027 4 C 0.038 3.962 5 H 0.126 0.874 6 N -0.381 5.381 7 C 0.344 3.656 8 O -0.380 6.380 9 C -0.230 4.230 10 C -0.056 4.056 11 C -0.249 4.249 12 C -0.070 4.070 13 C -0.258 4.258 14 C 0.130 3.870 15 O -0.023 6.023 16 C -0.479 4.479 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.465 5.465 20 Si 0.764 3.236 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.200 1.200 24 C 0.021 3.979 25 H 0.105 0.895 26 C -0.194 4.194 27 C -0.193 4.193 28 C -0.032 4.032 29 O -0.264 6.264 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.230 0.770 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.521 -11.997 10.934 16.240 hybrid contribution 0.284 0.239 -0.894 0.968 sum -0.236 -11.757 10.041 15.463 Atomic orbital electron populations 1.22665 0.82558 1.02007 0.99311 1.88070 1.18030 1.26556 1.95183 1.22922 0.93921 0.85440 1.00446 1.21322 0.92501 0.97987 0.84420 0.87436 1.45758 1.71418 1.11228 1.09715 1.18266 0.77559 0.86665 0.83092 1.90937 1.49489 1.13757 1.83784 1.18849 1.17915 0.93282 0.92970 1.20759 0.95264 0.92456 0.97092 1.20459 1.11703 0.98879 0.93891 1.20891 0.95485 0.93276 0.97307 1.21157 1.10428 0.95334 0.98870 1.19281 0.90403 0.85549 0.91745 1.84174 1.67588 1.12266 1.38234 1.21539 1.46527 0.88970 0.90864 0.88879 1.25371 0.96407 0.95877 0.98644 1.70142 1.40161 1.09510 1.26675 0.85672 0.78485 0.79558 0.79838 1.18984 1.20051 1.20033 1.22949 0.92637 0.85249 0.97069 0.89492 1.23260 0.95543 0.96907 1.03641 1.23281 0.99322 0.95400 1.01313 1.23399 0.87003 0.93125 0.99687 1.88680 1.29333 1.14182 1.94220 0.90173 0.94849 0.94631 0.93331 0.92489 0.76969 0.87206 0.87307 0.87226 0.85113 0.91986 0.89549 0.90018 0.90644 0.90078 0.90048 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -5.43 8.50 -57.57 -0.49 -5.92 16 3 C 0.05 0.78 5.74 37.16 0.21 0.99 16 4 C 0.14 2.16 2.27 -67.93 -0.15 2.01 16 5 H 0.11 1.74 7.57 -51.93 -0.39 1.35 16 6 N -0.73 -12.23 4.01 -54.85 -0.22 -12.45 16 7 C 0.55 12.22 7.73 -12.47 -0.10 12.13 16 8 O -0.51 -13.60 14.83 -16.57 -0.25 -13.85 16 9 C -0.23 -4.96 5.89 -104.81 -0.62 -5.58 16 10 C -0.04 -0.65 9.54 -39.20 -0.37 -1.02 16 11 C -0.23 -3.85 10.03 -39.61 -0.40 -4.24 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 13 C -0.24 -5.17 9.16 -39.44 -0.36 -5.54 16 14 C 0.19 4.74 6.66 -38.60 -0.26 4.49 16 15 O -0.12 -3.67 7.84 -21.05 -0.16 -3.84 16 16 C -0.40 -11.43 9.49 30.90 0.29 -11.14 16 17 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 18 C 0.04 1.24 5.49 -17.51 -0.10 1.15 16 19 N -0.83 -25.07 13.67 55.48 0.76 -24.31 16 20 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.08 0.95 3.26 -26.01 -0.08 0.86 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 C -0.16 -1.63 6.44 -24.70 -0.16 -1.78 16 27 C -0.16 -1.34 7.16 -24.40 -0.17 -1.51 16 28 C 0.04 0.44 7.40 38.18 0.28 0.72 16 29 O -0.35 -4.39 8.50 -57.57 -0.49 -4.88 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.39 5.93 5.23 -40.82 -0.21 5.72 16 36 H 0.11 1.58 6.40 -52.49 -0.34 1.24 16 37 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.09 1.05 7.17 -51.93 -0.37 0.68 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.55 7.53 -51.93 -0.39 0.16 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -34.73 376.09 -7.96 -42.68 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.48 Total: 9.63 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.27 Total: -8.28 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.54 Total: -36.76 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.39 Total: -28.49 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.73 -7.96 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790278956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.634 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds