Wall clock time and date at job start Tue Mar 31 2020 19:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99841 * 2 1 4 4 C 1.52999 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46944 * 185.00347 * 4 3 2 6 6 N 1.46503 * 109.47016 * 65.00271 * 4 3 2 7 7 C 1.34773 * 119.99710 * 85.27757 * 6 4 3 8 8 O 1.21594 * 120.00276 * 359.71708 * 7 6 4 9 9 C 1.47541 * 119.99644 * 179.72461 * 7 6 4 10 10 C 1.39665 * 120.19671 * 359.71732 * 9 7 6 11 11 C 1.37830 * 119.91890 * 179.76511 * 10 9 7 12 12 C 1.38574 * 120.31790 * 0.51502 * 11 10 9 13 13 C 1.38025 * 120.40872 * 359.74170 * 12 11 10 14 14 C 1.38840 * 120.06713 * 359.97438 * 13 12 11 15 15 O 1.35520 * 120.15828 * 180.02562 * 14 13 12 16 16 C 1.34813 * 117.00171 * 354.40947 * 15 14 13 17 17 H 1.08002 * 119.99691 * 5.06035 * 16 15 14 18 18 C 1.38699 * 120.00254 * 185.06053 * 16 15 14 19 19 N 1.31521 * 119.99467 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47065 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46653 * 120.00211 * 20 18 16 23 23 H 1.48501 * 109.47178 * 240.00023 * 20 18 16 24 24 C 1.52995 * 109.47341 * 305.00098 * 4 3 2 25 25 H 1.08999 * 109.82520 * 300.70536 * 24 4 3 26 26 C 1.54382 * 109.83294 * 179.81408 * 24 4 3 27 27 C 1.55454 * 102.18560 * 219.18294 * 26 24 4 28 28 C 1.54941 * 100.98960 * 34.04006 * 27 26 24 29 29 O 1.43241 * 109.83026 * 61.58759 * 24 4 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46998 * 299.99499 * 1 2 3 32 32 H 1.08997 * 109.47128 * 59.99758 * 1 2 3 33 33 H 1.09001 * 109.46789 * 60.00502 * 3 2 1 34 34 H 1.08995 * 109.47368 * 300.00133 * 3 2 1 35 35 H 0.97001 * 119.99615 * 264.99488 * 6 4 3 36 36 H 1.07994 * 120.04009 * 0.02970 * 10 9 7 37 37 H 1.08000 * 119.83772 * 180.27387 * 11 10 9 38 38 H 1.08004 * 119.79595 * 179.75554 * 12 11 10 39 39 H 1.07998 * 119.96730 * 179.97438 * 13 12 11 40 40 H 0.97002 * 119.99372 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.84692 * 337.32070 * 26 24 4 42 42 H 1.08996 * 110.84609 * 100.93854 * 26 24 4 43 43 H 1.08998 * 111.05677 * 276.11933 * 27 26 24 44 44 H 1.09006 * 111.17961 * 152.00833 * 27 26 24 45 45 H 1.09002 * 110.30711 * 204.68671 * 28 27 26 46 46 H 1.08996 * 110.39438 * 82.56666 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 7 3.9757 0.5645 -1.2528 7 6 4.1698 1.3240 -2.3491 8 8 3.9746 2.5232 -2.3003 9 6 4.6189 0.7003 -3.6085 10 6 4.8499 -0.6759 -3.6675 11 6 5.2647 -1.2533 -4.8483 12 6 5.4645 -0.4733 -5.9761 13 6 5.2454 0.8887 -5.9313 14 6 4.8217 1.4867 -4.7521 15 8 4.6055 2.8238 -4.7062 16 6 4.9305 3.5344 -5.8048 17 1 5.2657 3.0263 -6.6969 18 6 4.8342 4.9180 -5.7894 19 7 4.4264 5.5366 -4.7028 20 14 5.2852 5.9026 -7.3113 21 1 5.7114 4.9770 -8.3914 22 1 4.1048 6.6814 -7.7646 23 1 6.3971 6.8322 -6.9880 24 6 3.9791 0.3194 1.1806 25 1 3.6435 0.7693 2.1150 26 6 5.5173 0.1881 1.1852 27 6 5.7187 -1.2960 1.6016 28 6 4.4901 -1.9603 0.9309 29 8 3.4308 -0.9976 1.0511 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 4.1313 -0.3922 -1.2916 36 1 4.6995 -1.2875 -2.7902 37 1 5.4386 -2.3183 -4.8937 38 1 5.7934 -0.9340 -6.8959 39 1 5.4037 1.4899 -6.8144 40 1 4.3587 6.5042 -4.6921 41 1 5.9251 0.3705 0.1909 42 1 5.9619 0.8618 1.9176 43 1 5.6826 -1.4070 2.6854 44 1 6.6498 -1.6951 1.1991 45 1 4.2261 -2.8805 1.4521 46 1 4.6962 -2.1670 -0.1193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790278956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:08 Heat of formation + Delta-G solvation = -140.726483 kcal Electronic energy + Delta-G solvation = -30194.247837 eV Core-core repulsion = 26049.398994 eV Total energy + Delta-G solvation = -4144.848843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55061 -40.69484 -39.46288 -38.50236 -38.01385 -35.63217 -34.32105 -32.95908 -32.74716 -31.03138 -30.56749 -28.98670 -27.39829 -26.93759 -25.08053 -24.01727 -23.15276 -22.43998 -21.74168 -21.29163 -19.84070 -19.33863 -18.12394 -17.81911 -17.18775 -17.09488 -16.63757 -16.45550 -16.28052 -16.17853 -15.84124 -15.75627 -15.69418 -15.30176 -14.98927 -14.63187 -14.32974 -14.19178 -14.01805 -13.81494 -13.55167 -13.43200 -13.20294 -12.99141 -12.69036 -12.55100 -12.53145 -12.33187 -12.27806 -12.09876 -11.98500 -11.82055 -11.62505 -11.42365 -10.84263 -10.68458 -10.57753 -10.33249 -10.02645 -9.77607 -9.03845 -8.44535 -6.15175 0.12174 0.71925 1.32354 1.42776 1.52046 2.09568 2.15544 2.23129 2.86583 2.88587 3.01616 3.23294 3.45884 3.51496 3.67901 3.95310 4.03447 4.06189 4.11935 4.24807 4.29617 4.31496 4.35195 4.49431 4.51954 4.53455 4.57234 4.61730 4.64278 4.73594 4.84873 4.91019 4.94047 4.98365 5.02668 5.07174 5.08131 5.13598 5.30801 5.47969 5.58000 5.60770 5.68785 5.96505 6.16052 6.19583 6.29194 6.70130 6.94966 7.48835 7.80685 8.76138 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.003625 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.420166 B = 7721.669100 C = 8490.656880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.057 3.943 4 C 0.137 3.863 5 H 0.088 0.912 6 N -0.700 5.700 7 C 0.549 3.451 8 O -0.567 6.567 9 C -0.244 4.244 10 C -0.031 4.031 11 C -0.199 4.199 12 C -0.039 4.039 13 C -0.257 4.257 14 C 0.150 3.850 15 O -0.187 6.187 16 C -0.427 4.427 17 H 0.106 0.894 18 C -0.021 4.021 19 N -0.904 5.904 20 Si 1.021 2.979 21 H -0.246 1.246 22 H -0.269 1.269 23 H -0.268 1.268 24 C 0.088 3.912 25 H 0.105 0.895 26 C -0.157 4.157 27 C -0.144 4.144 28 C 0.036 3.964 29 O -0.363 6.363 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.016 0.984 35 H 0.407 0.593 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.124 0.876 40 H 0.270 0.730 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -17.720 10.771 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C -0.022 4.022 4 C 0.031 3.969 5 H 0.105 0.895 6 N -0.354 5.354 7 C 0.339 3.661 8 O -0.446 6.446 9 C -0.249 4.249 10 C -0.049 4.049 11 C -0.218 4.218 12 C -0.058 4.058 13 C -0.276 4.276 14 C 0.095 3.905 15 O -0.090 6.090 16 C -0.503 4.503 17 H 0.124 0.876 18 C -0.220 4.220 19 N -0.540 5.540 20 Si 0.840 3.160 21 H -0.169 1.169 22 H -0.194 1.194 23 H -0.193 1.193 24 C 0.030 3.970 25 H 0.122 0.878 26 C -0.195 4.195 27 C -0.181 4.181 28 C -0.041 4.041 29 O -0.282 6.282 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.244 0.756 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.173 0.827 39 H 0.142 0.858 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.586 -16.706 11.083 20.057 hybrid contribution -0.074 1.161 -0.819 1.423 sum 0.512 -15.545 10.264 18.635 Atomic orbital electron populations 1.22851 0.81083 1.03457 0.99650 1.88032 1.19661 1.25901 1.95216 1.22781 0.94061 0.85726 0.99593 1.21511 0.92449 0.98055 0.84855 0.89459 1.45512 1.69532 1.11309 1.09080 1.18525 0.77009 0.86160 0.84362 1.90918 1.52324 1.16505 1.84826 1.19293 1.18089 0.95226 0.92283 1.21218 0.93799 0.90510 0.99421 1.21153 1.07100 1.01309 0.92214 1.21426 0.93202 0.91416 0.99712 1.21306 1.11327 0.97391 0.97565 1.20054 0.91410 0.84945 0.94099 1.84178 1.71216 1.14384 1.39187 1.22075 1.46987 0.89808 0.91445 0.87642 1.26733 0.96092 0.96826 1.02382 1.70331 1.44055 1.09686 1.29931 0.84510 0.78290 0.77722 0.75470 1.16885 1.19438 1.19337 1.22887 0.93647 0.84851 0.95625 0.87759 1.23248 0.94230 0.99031 1.02952 1.23260 0.99379 0.93276 1.02211 1.23626 0.86902 0.93243 1.00282 1.88663 1.30821 1.14479 1.94202 0.88127 0.93144 0.95709 0.91034 0.96570 0.75571 0.83288 0.81891 0.82748 0.85835 0.92070 0.91725 0.88699 0.89153 0.88711 0.88236 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.86 16 2 O -0.37 -10.91 8.50 -127.62 -1.08 -11.99 16 3 C 0.06 1.79 5.74 71.98 0.41 2.21 16 4 C 0.14 4.24 2.27 44.99 0.10 4.34 16 5 H 0.09 3.07 7.57 -2.39 -0.02 3.06 16 6 N -0.70 -24.00 4.01 -445.70 -1.79 -25.79 16 7 C 0.55 25.61 7.73 86.70 0.67 26.28 16 8 O -0.57 -33.46 14.83 16.88 0.25 -33.21 16 9 C -0.24 -10.95 5.89 -19.99 -0.12 -11.07 16 10 C -0.03 -0.99 9.54 22.52 0.21 -0.78 16 11 C -0.20 -5.55 10.03 22.25 0.22 -5.32 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 13 C -0.26 -11.13 9.16 22.36 0.20 -10.92 16 14 C 0.15 7.86 6.66 22.91 0.15 8.02 16 15 O -0.19 -12.00 7.84 0.85 0.01 -11.99 16 16 C -0.43 -26.00 9.49 67.93 0.64 -25.36 16 17 H 0.11 5.77 5.21 -2.91 -0.02 5.76 16 18 C -0.02 -1.26 5.49 84.85 0.47 -0.79 16 19 N -0.90 -59.18 13.67 21.62 0.30 -58.89 16 20 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 C 0.09 1.99 3.26 31.06 0.10 2.09 16 25 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 26 C -0.16 -3.01 6.44 31.91 0.21 -2.80 16 27 C -0.14 -1.98 7.16 32.10 0.23 -1.75 16 28 C 0.04 0.58 7.40 72.65 0.54 1.12 16 29 O -0.36 -8.32 8.50 -127.62 -1.08 -9.40 16 30 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.41 11.66 5.23 -92.71 -0.48 11.17 16 36 H 0.15 3.57 6.40 -2.91 -0.02 3.55 16 37 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 40 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 41 H 0.06 1.53 7.17 -2.39 -0.02 1.51 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 0.91 7.53 -2.39 -0.02 0.89 16 Total: -1.00 -87.26 376.09 4.66 -82.60 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.52 Total: 36.15 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 5.52 Total: -13.90 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -1.49 Total: -84.68 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: -1.91 Total: -66.60 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -87.26 4.66 -82.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790278956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.129 kcal (2) G-P(sol) polarization free energy of solvation -87.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds