Wall clock time and date at job start Tue Mar 31 2020 19:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 116.99870 * 2 1 4 4 O 1.20828 * 120.00206 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99983 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47206 * 185.75194 * 5 3 2 7 7 H 1.08994 * 109.53790 * 305.87015 * 6 5 3 8 8 C 1.53093 * 109.50503 * 65.98192 * 6 5 3 9 9 O 1.43099 * 109.27948 * 176.78774 * 8 6 5 10 10 C 1.43024 * 113.68809 * 301.35518 * 9 8 6 11 11 C 1.53097 * 109.28734 * 58.64977 * 10 9 8 12 12 N 1.47008 * 109.50293 * 185.76359 * 6 5 3 13 13 C 1.46900 * 111.00138 * 57.67322 * 12 6 5 14 14 C 1.50705 * 109.46979 * 188.54358 * 13 12 6 15 15 C 1.38307 * 119.93148 * 269.72385 * 14 13 12 16 16 C 1.38098 * 120.06354 * 179.72660 * 15 14 13 17 17 C 1.38875 * 119.93236 * 0.57064 * 16 15 14 18 18 O 1.35752 * 120.06769 * 179.68301 * 17 16 15 19 19 C 1.34825 * 117.00242 * 174.30247 * 18 17 16 20 20 H 1.07999 * 120.00013 * 5.06509 * 19 18 17 21 21 C 1.38656 * 120.00139 * 185.07222 * 19 18 17 22 22 N 1.31563 * 119.99707 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00206 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46994 * 89.99795 * 23 21 19 25 25 H 1.48493 * 109.47225 * 210.00348 * 23 21 19 26 26 H 1.48504 * 109.46939 * 329.99991 * 23 21 19 27 27 C 1.38873 * 119.86527 * 359.70843 * 17 16 15 28 28 C 1.38104 * 119.92966 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47088 * 299.99415 * 1 2 3 31 31 H 1.08999 * 109.47394 * 59.99521 * 1 2 3 32 32 H 1.08997 * 109.47202 * 65.75076 * 5 3 2 33 33 H 1.09001 * 109.46879 * 305.74841 * 5 3 2 34 34 H 1.08999 * 109.50511 * 296.71660 * 8 6 5 35 35 H 1.08993 * 109.50868 * 56.85245 * 8 6 5 36 36 H 1.08991 * 109.50620 * 298.69653 * 10 9 8 37 37 H 1.08994 * 109.50512 * 178.60220 * 10 9 8 38 38 H 1.08998 * 109.51105 * 63.06562 * 11 10 9 39 39 H 1.09003 * 109.50228 * 183.19366 * 11 10 9 40 40 H 1.08993 * 109.47059 * 308.54413 * 13 12 6 41 41 H 1.09002 * 109.47228 * 68.55131 * 13 12 6 42 42 H 1.08001 * 119.96348 * 359.97438 * 15 14 13 43 43 H 1.08004 * 120.02620 * 180.27601 * 16 15 14 44 44 H 0.97003 * 119.99400 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.03698 * 179.97438 * 27 17 16 46 46 H 1.07998 * 119.96850 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0005 2.7349 0.1441 7 1 3.5222 3.3358 -0.6292 8 6 3.5898 3.2560 1.5238 9 8 4.0638 4.5968 1.6827 10 6 5.4825 4.7239 1.5537 11 6 5.9122 4.2176 0.1743 12 7 5.4610 2.8286 0.0054 13 6 5.9032 2.2847 -1.2856 14 6 7.4079 2.2034 -1.3075 15 6 8.1502 3.2739 -1.7721 16 6 9.5294 3.2045 -1.7882 17 6 10.1704 2.0537 -1.3482 18 8 11.5258 1.9801 -1.3688 19 6 12.0877 0.8845 -0.8195 20 1 11.4635 0.0784 -0.4633 21 6 13.4670 0.7928 -0.7117 22 7 14.0152 -0.2761 -0.1752 23 14 14.5468 2.1868 -1.3282 24 1 14.7744 3.1596 -0.2296 25 1 15.8502 1.6395 -1.7828 26 1 13.8741 2.8695 -2.4625 27 6 9.4221 0.9783 -0.8877 28 6 8.0434 1.0563 -0.8680 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9508 0.8727 -0.9378 33 1 3.9608 0.6942 0.8332 34 1 2.5033 3.2417 1.6096 35 1 4.0250 2.6224 2.2965 36 1 5.9726 4.1329 2.3273 37 1 5.7654 5.7710 1.6615 38 1 5.4644 4.8422 -0.5985 39 1 6.9984 4.2598 0.0933 40 1 5.4835 1.2883 -1.4230 41 1 5.5630 2.9366 -2.0902 42 1 7.6509 4.1665 -2.1190 43 1 10.1086 4.0425 -2.1470 44 1 14.9802 -0.3404 -0.1002 45 1 9.9177 0.0820 -0.5453 46 1 7.4608 0.2206 -0.5096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805819673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:51 Heat of formation + Delta-G solvation = -116.126005 kcal Electronic energy + Delta-G solvation = -28871.750867 eV Core-core repulsion = 24727.968780 eV Total energy + Delta-G solvation = -4143.782087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05176 -39.86413 -39.08387 -37.14623 -36.92476 -35.63793 -33.06802 -32.41414 -30.64352 -30.18742 -29.30910 -27.70437 -27.05246 -25.39490 -23.73541 -23.56163 -22.12032 -21.26670 -20.53739 -19.99697 -18.09206 -17.92510 -17.32467 -17.11067 -17.00561 -16.45700 -16.18418 -15.36644 -15.18138 -14.85139 -14.68768 -14.34914 -14.12447 -14.05848 -13.81117 -13.73239 -13.46579 -13.40466 -13.15813 -12.72526 -12.57402 -12.39540 -12.27062 -12.16036 -11.82606 -11.54730 -11.38618 -11.26772 -11.14170 -10.85277 -10.83712 -10.71786 -10.69144 -10.54702 -10.18000 -9.72658 -9.42176 -8.90507 -8.47913 -8.29096 -7.36708 -6.45132 -4.11776 1.83686 2.05807 2.10502 2.32174 3.19371 3.23273 3.37412 3.65462 3.79969 4.20504 4.33696 4.39599 4.49344 4.66536 4.73466 4.80203 4.80923 4.87451 4.92191 5.06956 5.09023 5.11965 5.16491 5.21932 5.24852 5.34521 5.38821 5.58978 5.60273 5.66028 5.68181 5.72900 5.84045 5.87011 6.05125 6.09116 6.27996 6.51182 6.72218 6.81728 6.84842 6.99706 7.04106 7.20218 7.27821 7.38167 7.56631 7.76316 7.99953 8.90022 9.52000 10.62377 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.002395 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.478920 B =11688.799711 C =12481.467985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.505 6.505 5 C -0.114 4.114 6 C 0.060 3.940 7 H 0.061 0.939 8 C 0.068 3.932 9 O -0.383 6.383 10 C 0.060 3.940 11 C 0.020 3.980 12 N -0.525 5.525 13 C 0.104 3.896 14 C -0.173 4.173 15 C -0.071 4.071 16 C -0.193 4.193 17 C 0.162 3.838 18 O -0.217 6.217 19 C -0.389 4.389 20 H 0.107 0.893 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.222 4.222 28 C -0.050 4.050 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.280 0.720 45 H 0.133 0.867 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.198 3.479 0.703 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.393 6.393 5 C -0.151 4.151 6 C -0.049 4.049 7 H 0.079 0.921 8 C -0.010 4.010 9 O -0.301 6.301 10 C -0.017 4.017 11 C -0.108 4.108 12 N -0.251 5.251 13 C -0.022 4.022 14 C -0.174 4.174 15 C -0.090 4.090 16 C -0.212 4.212 17 C 0.109 3.891 18 O -0.122 6.122 19 C -0.465 4.465 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.241 4.241 28 C -0.069 4.069 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.950 3.683 1.089 23.269 hybrid contribution 0.252 0.562 -0.901 1.091 sum -22.697 4.245 0.189 23.092 Atomic orbital electron populations 1.23284 0.76159 1.03806 1.02621 1.86522 1.23581 1.33357 1.84018 1.23751 0.92132 0.81379 0.72167 1.90683 1.67297 1.36162 1.45129 1.21488 0.87153 0.99238 1.07247 1.22033 0.89246 0.93910 0.99719 0.92096 1.22809 1.00133 0.83785 0.94233 1.88019 1.22237 1.27295 1.92583 1.22731 0.81251 1.01644 0.96070 1.22842 1.02712 0.87847 0.97400 1.62272 1.09107 1.19852 1.33844 1.20968 0.93092 0.99585 0.88538 1.19060 0.93197 0.96111 1.09064 1.20489 0.92772 0.97101 0.98606 1.20165 0.93889 0.97457 1.09703 1.19137 0.83691 0.93147 0.93083 1.83570 1.15466 1.43146 1.69982 1.20769 0.91808 0.94919 1.39000 0.87570 1.24476 0.96077 0.97611 0.95848 1.69650 1.12376 1.27387 1.42183 0.86181 0.79070 0.81470 0.80180 1.19862 1.20770 1.18393 1.21276 0.93884 1.00547 1.08364 1.20599 0.93625 0.96456 0.96187 0.88003 0.91791 0.91850 0.86542 0.86405 0.87930 0.92429 0.92029 0.88460 0.94139 0.88159 0.90209 0.94534 0.87326 0.86617 0.91015 0.84963 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.14 10.57 -39.26 -0.41 -3.56 16 3 C 0.46 4.48 7.61 36.01 0.27 4.75 16 4 O -0.50 -6.08 14.01 -18.75 -0.26 -6.34 16 5 C -0.11 -0.98 5.17 -27.88 -0.14 -1.12 16 6 C 0.06 0.64 1.69 -67.60 -0.11 0.52 16 7 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 8 C 0.07 0.75 6.01 37.21 0.22 0.98 16 9 O -0.38 -4.88 10.83 -35.23 -0.38 -5.26 16 10 C 0.06 0.67 7.01 37.21 0.26 0.93 16 11 C 0.02 0.23 5.25 -3.71 -0.02 0.21 16 12 N -0.53 -6.16 4.54 -227.78 -1.03 -7.19 16 13 C 0.10 1.24 4.89 -4.97 -0.02 1.22 16 14 C -0.17 -2.61 4.85 -104.57 -0.51 -3.12 16 15 C -0.07 -1.11 7.90 -39.61 -0.31 -1.42 16 16 C -0.19 -3.62 9.99 -39.40 -0.39 -4.02 16 17 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 18 O -0.22 -5.59 8.59 0.06 0.00 -5.59 16 19 C -0.39 -10.75 9.95 30.89 0.31 -10.45 16 20 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 21 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 22 N -0.88 -25.02 13.96 55.48 0.77 -24.25 16 23 Si 0.91 21.35 28.62 -169.99 -4.86 16.49 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.26 -6.15 7.11 56.52 0.40 -5.74 16 27 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 28 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 32 H 0.12 0.89 5.89 -51.93 -0.31 0.58 16 33 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.16 6.33 -51.93 -0.33 0.83 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 1.28 6.00 -51.93 -0.31 0.96 16 40 H 0.08 0.83 5.65 -51.93 -0.29 0.54 16 41 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 42 H 0.11 1.43 8.03 -52.49 -0.42 1.01 16 43 H 0.12 2.05 8.06 -52.48 -0.42 1.62 16 44 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -30.96 372.74 -7.48 -38.44 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.43 Total: 3.02 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.49 Total: -11.38 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: -0.26 Total: -31.44 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.06 Total: -20.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.86 Total: 16.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.96 -7.48 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805819673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.685 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds