Wall clock time and date at job start Tue Mar 31 2020 19:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 116.99870 * 2 1 4 4 O 1.20828 * 120.00206 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99983 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47206 * 185.75194 * 5 3 2 7 7 H 1.08994 * 109.53790 * 305.87015 * 6 5 3 8 8 C 1.53093 * 109.50503 * 65.98192 * 6 5 3 9 9 O 1.43099 * 109.27948 * 176.78774 * 8 6 5 10 10 C 1.43024 * 113.68809 * 301.35518 * 9 8 6 11 11 C 1.53097 * 109.28734 * 58.64977 * 10 9 8 12 12 N 1.47008 * 109.50293 * 185.76359 * 6 5 3 13 13 C 1.46900 * 111.00138 * 57.67322 * 12 6 5 14 14 C 1.50705 * 109.46979 * 188.54358 * 13 12 6 15 15 C 1.38307 * 119.93148 * 269.72385 * 14 13 12 16 16 C 1.38098 * 120.06354 * 179.72660 * 15 14 13 17 17 C 1.38875 * 119.93236 * 0.57064 * 16 15 14 18 18 O 1.35752 * 120.06769 * 179.68301 * 17 16 15 19 19 C 1.34825 * 117.00242 * 174.30247 * 18 17 16 20 20 H 1.07999 * 120.00013 * 5.06509 * 19 18 17 21 21 C 1.38656 * 120.00139 * 185.07222 * 19 18 17 22 22 N 1.31563 * 119.99707 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00206 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46994 * 89.99795 * 23 21 19 25 25 H 1.48493 * 109.47225 * 210.00348 * 23 21 19 26 26 H 1.48504 * 109.46939 * 329.99991 * 23 21 19 27 27 C 1.38873 * 119.86527 * 359.70843 * 17 16 15 28 28 C 1.38104 * 119.92966 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47088 * 299.99415 * 1 2 3 31 31 H 1.08999 * 109.47394 * 59.99521 * 1 2 3 32 32 H 1.08997 * 109.47202 * 65.75076 * 5 3 2 33 33 H 1.09001 * 109.46879 * 305.74841 * 5 3 2 34 34 H 1.08999 * 109.50511 * 296.71660 * 8 6 5 35 35 H 1.08993 * 109.50868 * 56.85245 * 8 6 5 36 36 H 1.08991 * 109.50620 * 298.69653 * 10 9 8 37 37 H 1.08994 * 109.50512 * 178.60220 * 10 9 8 38 38 H 1.08998 * 109.51105 * 63.06562 * 11 10 9 39 39 H 1.09003 * 109.50228 * 183.19366 * 11 10 9 40 40 H 1.08993 * 109.47059 * 308.54413 * 13 12 6 41 41 H 1.09002 * 109.47228 * 68.55131 * 13 12 6 42 42 H 1.08001 * 119.96348 * 359.97438 * 15 14 13 43 43 H 1.08004 * 120.02620 * 180.27601 * 16 15 14 44 44 H 0.97003 * 119.99400 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.03698 * 179.97438 * 27 17 16 46 46 H 1.07998 * 119.96850 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0005 2.7349 0.1441 7 1 3.5222 3.3358 -0.6292 8 6 3.5898 3.2560 1.5238 9 8 4.0638 4.5968 1.6827 10 6 5.4825 4.7239 1.5537 11 6 5.9122 4.2176 0.1743 12 7 5.4610 2.8286 0.0054 13 6 5.9032 2.2847 -1.2856 14 6 7.4079 2.2034 -1.3075 15 6 8.1502 3.2739 -1.7721 16 6 9.5294 3.2045 -1.7882 17 6 10.1704 2.0537 -1.3482 18 8 11.5258 1.9801 -1.3688 19 6 12.0877 0.8845 -0.8195 20 1 11.4635 0.0784 -0.4633 21 6 13.4670 0.7928 -0.7117 22 7 14.0152 -0.2761 -0.1752 23 14 14.5468 2.1868 -1.3282 24 1 14.7744 3.1596 -0.2296 25 1 15.8502 1.6395 -1.7828 26 1 13.8741 2.8695 -2.4625 27 6 9.4221 0.9783 -0.8877 28 6 8.0434 1.0563 -0.8680 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9508 0.8727 -0.9378 33 1 3.9608 0.6942 0.8332 34 1 2.5033 3.2417 1.6096 35 1 4.0250 2.6224 2.2965 36 1 5.9726 4.1329 2.3273 37 1 5.7654 5.7710 1.6615 38 1 5.4644 4.8422 -0.5985 39 1 6.9984 4.2598 0.0933 40 1 5.4835 1.2883 -1.4230 41 1 5.5630 2.9366 -2.0902 42 1 7.6509 4.1665 -2.1190 43 1 10.1086 4.0425 -2.1470 44 1 14.9802 -0.3404 -0.1002 45 1 9.9177 0.0820 -0.5453 46 1 7.4608 0.2206 -0.5096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805819673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:50 Heat of formation + Delta-G solvation = -136.355044 kcal Electronic energy + Delta-G solvation = -28872.628064 eV Core-core repulsion = 24727.968780 eV Total energy + Delta-G solvation = -4144.659284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82565 -41.00774 -40.41891 -38.59173 -37.65046 -36.73127 -34.47054 -33.88483 -31.98917 -31.57845 -30.08107 -28.72706 -27.85173 -27.12612 -24.92244 -24.46560 -23.58153 -22.05994 -21.91373 -20.89217 -19.78727 -19.06647 -18.82829 -17.87683 -17.71924 -17.38962 -17.00190 -16.70749 -16.45461 -16.00005 -15.77662 -15.67149 -15.52015 -15.39284 -15.05669 -14.77922 -14.63015 -14.32889 -14.16714 -14.10659 -14.00627 -13.83264 -13.23768 -13.01761 -12.90132 -12.68242 -12.60988 -12.44315 -12.36270 -12.24257 -12.03132 -11.82238 -11.73313 -11.62393 -11.41703 -11.24115 -10.88542 -10.63240 -9.75067 -9.42201 -8.94639 -8.48473 -6.20523 0.60066 0.64592 1.11858 1.32366 1.36005 1.52417 1.66772 2.28870 2.63873 2.85279 2.95174 3.13349 3.25050 3.59225 3.63479 3.87028 3.92630 4.06013 4.10973 4.18588 4.21306 4.26224 4.31327 4.34171 4.37708 4.46209 4.50459 4.58225 4.63948 4.70606 4.74748 4.75229 4.83133 4.86339 4.92893 5.00527 5.02208 5.28859 5.37827 5.40710 5.58815 5.76928 5.82950 5.91939 5.95475 5.97463 6.14756 6.27750 6.68265 6.86298 7.61616 8.63098 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.002395 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.478920 B =11688.799711 C =12481.467985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.533 6.533 5 C -0.109 4.109 6 C 0.068 3.932 7 H 0.050 0.950 8 C 0.066 3.934 9 O -0.400 6.400 10 C 0.059 3.941 11 C 0.020 3.980 12 N -0.530 5.530 13 C 0.104 3.896 14 C -0.144 4.144 15 C -0.061 4.061 16 C -0.192 4.192 17 C 0.120 3.880 18 O -0.247 6.247 19 C -0.396 4.396 20 H 0.082 0.918 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.263 1.263 27 C -0.237 4.237 28 C -0.049 4.049 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.284 0.716 45 H 0.106 0.894 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.706 4.617 -0.052 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.423 6.423 5 C -0.147 4.147 6 C -0.041 4.041 7 H 0.068 0.932 8 C -0.011 4.011 9 O -0.319 6.319 10 C -0.017 4.017 11 C -0.108 4.108 12 N -0.256 5.256 13 C -0.022 4.022 14 C -0.145 4.145 15 C -0.080 4.080 16 C -0.211 4.211 17 C 0.071 3.929 18 O -0.155 6.155 19 C -0.473 4.473 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.792 3.208 24 H -0.191 1.191 25 H -0.193 1.193 26 H -0.187 1.187 27 C -0.256 4.256 28 C -0.068 4.068 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.512 4.817 0.331 25.965 hybrid contribution 0.576 0.248 -0.651 0.904 sum -24.936 5.065 -0.320 25.447 Atomic orbital electron populations 1.23540 0.74776 1.05634 1.02564 1.86512 1.24993 1.32780 1.83618 1.23904 0.92484 0.81209 0.71321 1.90680 1.67982 1.37076 1.46596 1.21488 0.86550 0.98014 1.08626 1.21928 0.88142 0.95080 0.98915 0.93155 1.22852 0.99971 0.83386 0.94856 1.88000 1.22998 1.28188 1.92718 1.22807 0.80569 1.02631 0.95716 1.22832 1.02084 0.88033 0.97873 1.62211 1.09931 1.19956 1.33506 1.21030 0.90330 1.01546 0.89263 1.19497 0.95300 0.94573 1.05117 1.20905 0.91462 0.98483 0.97131 1.20458 0.95351 0.96489 1.08849 1.19695 0.82837 0.95107 0.95225 1.83513 1.17363 1.42482 1.72112 1.20699 0.92098 0.95245 1.39215 0.90040 1.25273 0.97283 1.00055 0.96345 1.69735 1.12883 1.29307 1.44543 0.85227 0.77539 0.78502 0.79507 1.19149 1.19339 1.18740 1.21280 0.95674 0.99496 1.09161 1.20886 0.92046 0.98179 0.95645 0.85303 0.91858 0.91959 0.84935 0.85054 0.88354 0.91813 0.92419 0.86924 0.93582 0.89029 0.87889 0.92982 0.83652 0.85686 0.90643 0.87584 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.48 10.57 -51.43 -0.54 -6.02 16 3 C 0.47 7.92 7.61 71.24 0.54 8.47 16 4 O -0.53 -11.96 14.01 21.96 0.31 -11.65 16 5 C -0.11 -1.51 5.17 29.85 0.15 -1.35 16 6 C 0.07 1.24 1.69 44.93 0.08 1.31 16 7 H 0.05 1.06 7.84 -2.39 -0.02 1.04 16 8 C 0.07 1.34 6.01 72.01 0.43 1.77 16 9 O -0.40 -9.41 10.83 -148.98 -1.61 -11.02 16 10 C 0.06 1.19 7.01 72.01 0.50 1.70 16 11 C 0.02 0.40 5.25 86.31 0.45 0.85 16 12 N -0.53 -10.48 4.54 -874.55 -3.97 -14.45 16 13 C 0.10 2.00 4.89 85.56 0.42 2.42 16 14 C -0.14 -3.81 4.85 -19.83 -0.10 -3.91 16 15 C -0.06 -1.71 7.90 22.25 0.18 -1.54 16 16 C -0.19 -6.96 9.99 22.39 0.22 -6.73 16 17 C 0.12 5.44 6.65 22.57 0.15 5.59 16 18 O -0.25 -13.22 8.59 -22.71 -0.19 -13.41 16 19 C -0.40 -23.09 9.95 67.92 0.68 -22.41 16 20 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 21 C 0.01 0.50 5.49 84.83 0.47 0.96 16 22 N -0.92 -54.92 13.96 21.61 0.30 -54.62 16 23 Si 0.97 45.18 28.62 68.60 1.96 47.14 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 27 C -0.24 -9.93 9.17 22.39 0.21 -9.72 16 28 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 29 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 32 H 0.13 1.41 5.89 -2.39 -0.01 1.40 16 33 H 0.13 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.10 2.09 6.33 -2.39 -0.02 2.07 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 2.02 6.00 -2.39 -0.01 2.01 16 40 H 0.10 1.57 5.65 -2.39 -0.01 1.56 16 41 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 42 H 0.15 3.08 8.03 -2.91 -0.02 3.05 16 43 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.11 4.97 5.64 -2.91 -0.02 4.95 16 46 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -70.50 372.74 3.04 -67.46 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.00 Total: 19.02 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 5.79 Total: -22.45 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -3.67 Total: -69.07 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -2.04 Total: -42.11 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.96 Total: 47.14 kcal Total: -70.50 3.04 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805819673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.894 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds