Wall clock time and date at job start Tue Mar 31 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99927 * 2 1 4 4 O 1.21282 * 120.00174 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99986 * 180.02562 * 3 2 1 6 6 O 1.42894 * 109.47369 * 180.02562 * 5 3 2 7 7 C 1.35958 * 117.00291 * 179.97438 * 6 5 3 8 8 C 1.38719 * 120.00092 * 180.02562 * 7 6 5 9 9 C 1.38108 * 119.99772 * 180.02562 * 8 7 6 10 10 C 1.38714 * 120.00626 * 0.02562 * 9 8 7 11 11 O 1.35978 * 120.00430 * 179.97438 * 10 9 8 12 12 C 1.34246 * 117.00329 * 77.09013 * 11 10 9 13 13 O 1.20834 * 119.99403 * 355.08825 * 12 11 10 14 14 C 1.50694 * 120.00403 * 175.08569 * 12 11 10 15 15 C 1.52994 * 109.47484 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47478 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47143 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46960 * 180.02562 * 17 16 15 19 19 H 1.07990 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99530 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00628 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99342 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47242 * 60.00219 * 22 20 18 24 24 H 1.48503 * 109.46836 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47211 * 299.99492 * 22 20 18 26 26 C 1.38716 * 119.99319 * 0.25485 * 10 9 8 27 27 C 1.38105 * 120.00484 * 359.44674 * 26 10 9 28 28 H 1.08997 * 109.46731 * 299.99585 * 1 2 3 29 29 H 1.09002 * 109.47173 * 59.99365 * 1 2 3 30 30 H 1.08995 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00324 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47590 * 60.00298 * 5 3 2 33 33 H 1.09009 * 109.47110 * 300.00151 * 5 3 2 34 34 H 1.08002 * 120.00219 * 359.97438 * 8 7 6 35 35 H 1.08005 * 119.99742 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47044 * 300.00285 * 14 12 11 37 37 H 1.09005 * 109.46899 * 60.00052 * 14 12 11 38 38 H 1.08995 * 109.47435 * 300.00454 * 15 14 12 39 39 H 1.09005 * 109.46952 * 60.00155 * 15 14 12 40 40 H 1.08999 * 109.46632 * 300.00066 * 16 15 14 41 41 H 1.08999 * 109.46563 * 60.00335 * 16 15 14 42 42 H 1.09004 * 109.47088 * 299.99869 * 17 16 15 43 43 H 1.08997 * 109.47606 * 59.99694 * 17 16 15 44 44 H 0.96995 * 120.00053 * 180.02562 * 21 20 18 45 45 H 1.08005 * 119.99407 * 179.71078 * 26 10 9 46 46 H 1.07998 * 120.00893 * 180.25346 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 8 4.1223 2.5144 0.0001 7 6 5.4701 2.6926 0.0003 8 6 6.0003 3.9745 0.0015 9 6 7.3695 4.1554 0.0011 10 6 8.2146 3.0554 -0.0011 11 8 9.5626 3.2335 -0.0020 12 6 10.1329 3.5768 1.1639 13 8 9.4436 3.8004 2.1308 14 6 11.6325 3.6832 1.2667 15 6 12.0188 4.0869 2.6910 16 6 13.5414 4.1956 2.7953 17 6 13.9275 4.5987 4.2197 18 6 15.4272 4.7063 4.3222 19 1 16.0432 4.5067 3.4580 20 6 16.0127 5.0596 5.5195 21 7 15.2625 5.3032 6.5719 22 14 17.8717 5.1923 5.6466 23 1 18.3613 6.2184 4.6913 24 1 18.2465 5.5849 7.0289 25 1 18.4851 3.8798 5.3209 26 6 7.6843 1.7736 -0.0082 27 6 6.3152 1.5925 -0.0015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 4.0090 0.6537 -0.8908 33 1 4.0096 0.6531 0.8892 34 1 5.3424 4.8310 0.0019 35 1 7.7823 5.1534 0.0016 36 1 12.0824 2.7197 1.0271 37 1 11.9922 4.4365 0.5658 38 1 11.5689 5.0505 2.9302 39 1 11.6590 3.3339 3.3923 40 1 13.9915 3.2321 2.5560 41 1 13.9006 4.9488 2.0941 42 1 13.4773 5.5620 4.4594 43 1 13.5682 3.8453 4.9207 44 1 15.6745 5.5520 7.4140 45 1 8.3423 0.9171 -0.0146 46 1 5.9023 0.5946 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805882951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:41 Heat of formation + Delta-G solvation = -138.796875 kcal Electronic energy + Delta-G solvation = -26610.744631 eV Core-core repulsion = 22465.979462 eV Total energy + Delta-G solvation = -4144.765169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44432 -40.69640 -39.63618 -37.92307 -36.45248 -35.21609 -35.01758 -32.70538 -31.64711 -30.63767 -30.00858 -28.97806 -26.55415 -25.95768 -23.64478 -23.39521 -22.11589 -21.23951 -20.60760 -20.05902 -18.89543 -18.21663 -18.11125 -17.00505 -16.85951 -16.81340 -16.38005 -16.18247 -15.64668 -15.30095 -15.00906 -14.65345 -14.49977 -14.20257 -14.13643 -13.79662 -13.64258 -13.32571 -13.00378 -12.89713 -12.72045 -12.61993 -12.46003 -11.87524 -11.80461 -11.68737 -11.44312 -11.01013 -10.89366 -10.62723 -10.60923 -10.49063 -10.47179 -10.46168 -9.81635 -9.66647 -9.44567 -9.31289 -9.04861 -8.48154 -8.31932 -5.96789 -3.99643 0.80423 0.91371 1.95638 1.97991 2.15397 2.65282 3.11139 3.34836 3.39369 3.41395 3.43289 3.96859 4.27598 4.40298 4.41046 4.45213 4.47847 4.60751 4.62463 4.86520 4.91116 5.01506 5.13778 5.20512 5.22251 5.25720 5.38686 5.55160 5.56797 5.66996 5.77277 5.82653 6.01519 6.04093 6.11593 6.18884 6.41047 6.52146 6.71135 6.73982 6.89543 6.92474 7.14371 7.54322 7.71040 7.82727 7.85781 8.03617 8.45195 9.07689 9.64268 11.14452 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.001394 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.359547 B =20079.466806 C =20418.565094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.514 3.486 4 O -0.512 6.512 5 C 0.040 3.960 6 O -0.288 6.288 7 C 0.128 3.872 8 C -0.130 4.130 9 C -0.078 4.078 10 C 0.052 3.948 11 O -0.297 6.297 12 C 0.454 3.546 13 O -0.486 6.486 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.078 4.078 27 C -0.197 4.197 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.404 0.596 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.136 0.864 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.146 -14.205 -18.588 35.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.388 5.388 3 C 0.298 3.702 4 O -0.386 6.386 5 C -0.039 4.039 6 O -0.200 6.200 7 C 0.082 3.918 8 C -0.149 4.149 9 C -0.096 4.096 10 C 0.011 3.989 11 O -0.213 6.213 12 C 0.298 3.702 13 O -0.370 6.370 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.097 4.097 27 C -0.216 4.216 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.238 0.762 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.154 0.846 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -27.989 -13.129 -18.082 35.815 hybrid contribution 1.239 -0.622 0.200 1.401 sum -26.750 -13.752 -17.882 34.992 Atomic orbital electron populations 1.21588 0.78557 1.02631 1.02752 1.45610 1.08173 1.08230 1.76745 1.20101 0.88934 0.84255 0.76863 1.90785 1.69814 1.31035 1.46938 1.22460 0.92590 0.84690 1.04189 1.86169 1.19021 1.26108 1.88724 1.19022 0.81695 0.94349 0.96704 1.20287 0.94397 0.95215 1.04979 1.21169 0.92411 0.99054 0.96965 1.18436 0.81604 0.93190 1.05689 1.84705 1.19707 1.80344 1.36592 1.24733 0.92831 0.72728 0.79906 1.90710 1.64773 1.44192 1.37304 1.21643 0.85266 1.05374 1.02317 1.21604 0.98680 1.02423 0.91980 1.21651 0.91234 1.00473 1.01380 1.19093 0.96011 0.96762 0.89837 1.21234 0.92232 1.46590 0.96027 0.92730 1.25031 0.98044 0.95465 0.95914 1.69959 1.35100 1.47211 1.01164 0.86668 0.85871 0.78485 0.77015 1.20256 1.21312 1.20267 1.20940 0.94815 0.96226 0.97697 1.21045 0.93389 0.98158 1.08961 0.91879 0.91921 0.90197 0.76198 0.88658 0.88613 0.84129 0.84460 0.87607 0.87585 0.91434 0.91488 0.93162 0.93124 0.96528 0.96550 0.92963 0.84611 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 10.70 59.85 0.64 0.94 16 2 N -0.73 -2.78 5.71 -67.08 -0.38 -3.16 16 3 C 0.51 3.93 7.91 -10.99 -0.09 3.84 16 4 O -0.51 -6.55 16.50 -14.35 -0.24 -6.79 16 5 C 0.04 0.23 5.22 36.01 0.19 0.42 16 6 O -0.29 -2.93 9.67 -39.52 -0.38 -3.31 16 7 C 0.13 1.28 6.69 -39.22 -0.26 1.02 16 8 C -0.13 -1.39 9.98 -39.45 -0.39 -1.78 16 9 C -0.08 -0.89 9.56 -39.45 -0.38 -1.27 16 10 C 0.05 0.63 5.13 -39.23 -0.20 0.43 16 11 O -0.30 -3.80 10.03 -23.74 -0.24 -4.04 16 12 C 0.45 6.44 7.83 36.00 0.28 6.72 16 13 O -0.49 -8.46 15.48 -18.76 -0.29 -8.75 16 14 C -0.11 -1.39 5.81 -27.89 -0.16 -1.55 16 15 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 16 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.08 -0.78 9.98 -39.45 -0.39 -1.17 16 27 C -0.20 -1.66 9.03 -39.45 -0.36 -2.01 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 32 H 0.10 0.28 7.66 -51.93 -0.40 -0.12 16 33 H 0.10 0.34 7.66 -51.92 -0.40 -0.06 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.14 0.66 6.29 -52.49 -0.33 0.32 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -37.91 398.72 -8.68 -46.59 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -6.94 Total: -4.76 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.93 Total: -11.95 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.35 Total: -29.68 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.15 Total: -22.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.91 -8.68 -46.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805882951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.211 kcal (2) G-P(sol) polarization free energy of solvation -37.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds