Wall clock time and date at job start Tue Mar 31 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99927 * 2 1 4 4 O 1.21282 * 120.00174 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99986 * 180.02562 * 3 2 1 6 6 O 1.42894 * 109.47369 * 180.02562 * 5 3 2 7 7 C 1.35958 * 117.00291 * 179.97438 * 6 5 3 8 8 C 1.38719 * 120.00092 * 180.02562 * 7 6 5 9 9 C 1.38108 * 119.99772 * 180.02562 * 8 7 6 10 10 C 1.38714 * 120.00626 * 0.02562 * 9 8 7 11 11 O 1.35978 * 120.00430 * 179.97438 * 10 9 8 12 12 C 1.34246 * 117.00329 * 77.09013 * 11 10 9 13 13 O 1.20834 * 119.99403 * 355.08825 * 12 11 10 14 14 C 1.50694 * 120.00403 * 175.08569 * 12 11 10 15 15 C 1.52994 * 109.47484 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47478 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47143 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46960 * 180.02562 * 17 16 15 19 19 H 1.07990 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99530 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00628 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99342 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47242 * 60.00219 * 22 20 18 24 24 H 1.48503 * 109.46836 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47211 * 299.99492 * 22 20 18 26 26 C 1.38716 * 119.99319 * 0.25485 * 10 9 8 27 27 C 1.38105 * 120.00484 * 359.44674 * 26 10 9 28 28 H 1.08997 * 109.46731 * 299.99585 * 1 2 3 29 29 H 1.09002 * 109.47173 * 59.99365 * 1 2 3 30 30 H 1.08995 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00324 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47590 * 60.00298 * 5 3 2 33 33 H 1.09009 * 109.47110 * 300.00151 * 5 3 2 34 34 H 1.08002 * 120.00219 * 359.97438 * 8 7 6 35 35 H 1.08005 * 119.99742 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47044 * 300.00285 * 14 12 11 37 37 H 1.09005 * 109.46899 * 60.00052 * 14 12 11 38 38 H 1.08995 * 109.47435 * 300.00454 * 15 14 12 39 39 H 1.09005 * 109.46952 * 60.00155 * 15 14 12 40 40 H 1.08999 * 109.46632 * 300.00066 * 16 15 14 41 41 H 1.08999 * 109.46563 * 60.00335 * 16 15 14 42 42 H 1.09004 * 109.47088 * 299.99869 * 17 16 15 43 43 H 1.08997 * 109.47606 * 59.99694 * 17 16 15 44 44 H 0.96995 * 120.00053 * 180.02562 * 21 20 18 45 45 H 1.08005 * 119.99407 * 179.71078 * 26 10 9 46 46 H 1.07998 * 120.00893 * 180.25346 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 8 4.1223 2.5144 0.0001 7 6 5.4701 2.6926 0.0003 8 6 6.0003 3.9745 0.0015 9 6 7.3695 4.1554 0.0011 10 6 8.2146 3.0554 -0.0011 11 8 9.5626 3.2335 -0.0020 12 6 10.1329 3.5768 1.1639 13 8 9.4436 3.8004 2.1308 14 6 11.6325 3.6832 1.2667 15 6 12.0188 4.0869 2.6910 16 6 13.5414 4.1956 2.7953 17 6 13.9275 4.5987 4.2197 18 6 15.4272 4.7063 4.3222 19 1 16.0432 4.5067 3.4580 20 6 16.0127 5.0596 5.5195 21 7 15.2625 5.3032 6.5719 22 14 17.8717 5.1923 5.6466 23 1 18.3613 6.2184 4.6913 24 1 18.2465 5.5849 7.0289 25 1 18.4851 3.8798 5.3209 26 6 7.6843 1.7736 -0.0082 27 6 6.3152 1.5925 -0.0015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 4.0090 0.6537 -0.8908 33 1 4.0096 0.6531 0.8892 34 1 5.3424 4.8310 0.0019 35 1 7.7823 5.1534 0.0016 36 1 12.0824 2.7197 1.0271 37 1 11.9922 4.4365 0.5658 38 1 11.5689 5.0505 2.9302 39 1 11.6590 3.3339 3.3923 40 1 13.9915 3.2321 2.5560 41 1 13.9006 4.9488 2.0941 42 1 13.4773 5.5620 4.4594 43 1 13.5682 3.8453 4.9207 44 1 15.6745 5.5520 7.4140 45 1 8.3423 0.9171 -0.0146 46 1 5.9023 0.5946 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805882951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:40 Heat of formation + Delta-G solvation = -162.904378 kcal Electronic energy + Delta-G solvation = -26611.790011 eV Core-core repulsion = 22465.979462 eV Total energy + Delta-G solvation = -4145.810549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.39096 -41.38271 -40.32370 -38.85963 -37.35070 -36.63906 -35.72957 -34.65496 -32.36734 -31.85112 -31.03026 -29.77350 -27.74305 -26.86479 -25.05832 -24.12195 -23.36162 -22.02233 -21.69746 -21.43092 -19.57004 -19.12939 -18.74652 -18.37961 -17.96186 -17.69315 -17.48794 -17.01777 -16.52737 -16.47960 -15.88927 -15.84562 -15.60913 -15.24023 -14.93983 -14.57746 -14.54958 -14.22801 -14.07625 -13.88973 -13.74021 -13.60001 -13.41161 -13.26652 -13.12567 -12.82925 -12.73516 -12.38628 -12.22510 -12.17910 -12.09932 -11.72699 -11.68274 -11.37256 -11.29674 -11.09299 -11.06883 -10.52494 -10.25287 -10.19341 -9.26319 -8.17156 -6.29049 -0.01292 0.16836 1.07608 1.41937 1.42134 1.45656 1.48461 1.53425 1.72376 2.43491 2.61877 2.63238 3.15983 3.53010 3.62765 3.72954 3.79444 3.93427 4.00513 4.08222 4.09316 4.13610 4.28097 4.42872 4.45129 4.55854 4.59094 4.64811 4.78475 4.82071 4.85198 4.90099 4.93676 5.08929 5.15068 5.22607 5.28954 5.30027 5.33637 5.38057 5.57106 5.62872 5.79442 5.89840 6.16705 6.26937 6.44810 6.78759 6.89483 7.12057 7.40717 8.94699 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.001394 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.359547 B =20079.466806 C =20418.565094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.508 3.492 4 O -0.577 6.577 5 C 0.032 3.968 6 O -0.314 6.314 7 C 0.127 3.873 8 C -0.148 4.148 9 C -0.091 4.091 10 C 0.018 3.982 11 O -0.289 6.289 12 C 0.459 3.541 13 O -0.527 6.527 14 C -0.098 4.098 15 C -0.101 4.101 16 C -0.096 4.096 17 C 0.018 3.982 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.264 1.264 26 C -0.079 4.079 27 C -0.186 4.186 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.425 0.575 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.063 0.937 42 H -0.015 1.015 43 H -0.013 1.013 44 H 0.262 0.738 45 H 0.158 0.842 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.246 -16.999 -20.463 37.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.294 3.706 4 O -0.456 6.456 5 C -0.045 4.045 6 O -0.228 6.228 7 C 0.081 3.919 8 C -0.167 4.167 9 C -0.109 4.109 10 C -0.023 4.023 11 O -0.204 6.204 12 C 0.305 3.695 13 O -0.414 6.414 14 C -0.135 4.135 15 C -0.139 4.139 16 C -0.133 4.133 17 C -0.019 4.019 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.189 1.189 26 C -0.097 4.097 27 C -0.204 4.204 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.263 0.737 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.004 0.996 43 H 0.005 0.995 44 H 0.071 0.929 45 H 0.176 0.824 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -27.085 -15.997 -19.999 37.276 hybrid contribution 0.793 0.170 0.780 1.126 sum -26.292 -15.827 -19.218 36.209 Atomic orbital electron populations 1.21713 0.78263 1.04632 1.01450 1.45529 1.08484 1.08163 1.74605 1.20586 0.89891 0.84238 0.75921 1.90761 1.71114 1.33381 1.50336 1.22832 0.91160 0.83246 1.07266 1.86142 1.18929 1.29032 1.88648 1.19136 0.82104 0.94549 0.96101 1.20414 0.94241 0.96263 1.05742 1.21225 0.92888 0.99152 0.97635 1.18792 0.81209 0.94444 1.07856 1.84691 1.20366 1.79861 1.35510 1.24913 0.93163 0.71660 0.79738 1.90701 1.65741 1.46183 1.38771 1.21536 0.84641 1.07701 0.99656 1.21371 0.96496 1.01214 0.94806 1.21438 0.93230 1.01396 0.97270 1.19057 0.95149 0.94368 0.93338 1.21741 0.93514 1.46275 0.96588 0.91512 1.26049 1.03679 0.94927 0.95503 1.70117 1.37530 1.48278 1.01841 0.85474 0.79102 0.79166 0.77143 1.19006 1.21177 1.18887 1.21264 0.95875 0.95894 0.96693 1.21445 0.92489 0.99545 1.06894 0.93383 0.93156 0.86466 0.73727 0.85007 0.85656 0.84052 0.84771 0.84612 0.84973 0.93234 0.93034 0.91609 0.91782 0.99619 0.99480 0.92909 0.82431 0.80451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.70 127.77 1.37 1.82 16 2 N -0.71 -3.92 5.71 -484.52 -2.77 -6.69 16 3 C 0.51 7.22 7.91 87.66 0.69 7.91 16 4 O -0.58 -15.28 16.50 16.00 0.26 -15.02 16 5 C 0.03 0.29 5.22 71.24 0.37 0.66 16 6 O -0.31 -6.09 9.67 -74.04 -0.72 -6.80 16 7 C 0.13 2.40 6.69 22.50 0.15 2.55 16 8 C -0.15 -3.24 9.98 22.35 0.22 -3.02 16 9 C -0.09 -2.14 9.56 22.35 0.21 -1.92 16 10 C 0.02 0.43 5.13 22.50 0.12 0.54 16 11 O -0.29 -7.05 10.03 4.11 0.04 -7.01 16 12 C 0.46 12.66 7.83 71.23 0.56 13.22 16 13 O -0.53 -18.65 15.48 21.94 0.34 -18.31 16 14 C -0.10 -2.32 5.81 29.84 0.17 -2.15 16 15 C -0.10 -3.40 4.50 30.59 0.14 -3.26 16 16 C -0.10 -3.73 5.15 30.59 0.16 -3.57 16 17 C 0.02 0.96 4.97 29.85 0.15 1.11 16 18 C -0.54 -30.99 9.11 25.60 0.23 -30.75 16 19 H 0.07 3.56 7.74 -2.92 -0.02 3.53 16 20 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 21 N -0.94 -58.39 13.29 21.45 0.28 -58.10 16 22 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 C -0.08 -1.39 9.98 22.35 0.22 -1.17 16 27 C -0.19 -2.58 9.03 22.35 0.20 -2.37 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.43 -1.29 8.83 -92.71 -0.82 -2.11 16 32 H 0.13 0.20 7.66 -2.39 -0.02 0.19 16 33 H 0.13 0.38 7.66 -2.38 -0.02 0.36 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.13 2.49 8.14 -2.38 -0.02 2.48 16 38 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 39 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 46 H 0.18 0.81 6.29 -2.91 -0.02 0.79 16 Total: -1.00 -87.42 398.72 5.07 -82.35 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 0.17 Total: 3.42 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 5.43 Total: -20.18 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -2.48 Total: -64.79 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.07 Total: -47.13 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -87.42 5.07 -82.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805882951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.555 kcal (2) G-P(sol) polarization free energy of solvation -87.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds