Wall clock time and date at job start Tue Mar 31 2020 18:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00165 * 2 1 4 4 C 1.34778 * 120.00101 * 179.97438 * 2 1 3 5 5 O 1.21286 * 119.99686 * 359.97438 * 4 2 1 6 6 C 1.50690 * 120.00247 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47551 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47477 * 180.02562 * 7 6 4 9 9 O 1.45208 * 109.47100 * 179.97438 * 8 7 6 10 10 C 1.34229 * 116.99784 * 180.02562 * 9 8 7 11 11 O 1.20830 * 119.99962 * 0.02562 * 10 9 8 12 12 C 1.50704 * 119.99937 * 179.97438 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47558 * 299.99935 * 1 2 3 30 30 H 1.09001 * 109.47040 * 60.00266 * 1 2 3 31 31 H 1.08999 * 109.47414 * 270.00054 * 3 2 1 32 32 H 1.09003 * 109.46475 * 29.99717 * 3 2 1 33 33 H 1.08996 * 109.47133 * 149.99427 * 3 2 1 34 34 H 1.09002 * 109.47214 * 60.00012 * 6 4 2 35 35 H 1.08998 * 109.47245 * 300.00132 * 6 4 2 36 36 H 1.09002 * 109.46891 * 59.99766 * 7 6 4 37 37 H 1.09003 * 109.47336 * 300.00446 * 7 6 4 38 38 H 1.09002 * 109.47268 * 59.99976 * 8 7 6 39 39 H 1.08998 * 109.47265 * 300.00051 * 8 7 6 40 40 H 1.09002 * 109.46571 * 59.99926 * 12 10 9 41 41 H 1.08992 * 109.46782 * 300.00190 * 12 10 9 42 42 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 45 45 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0015 6 6 3.6458 -1.1672 0.0011 7 6 4.1559 -2.6097 0.0010 8 6 5.6858 -2.6097 0.0022 9 8 6.1698 -3.9788 0.0027 10 6 7.5005 -4.1546 0.0043 11 8 8.2365 -3.1963 0.0058 12 6 8.0766 -5.5472 0.0055 13 6 9.5815 -5.4683 0.0079 14 6 10.2733 -5.4329 -1.1894 15 6 11.6542 -5.3610 -1.1914 16 6 12.3467 -5.3179 0.0029 17 6 11.6554 -5.3591 1.2064 18 8 12.3335 -5.3230 2.3819 19 6 13.6793 -5.3691 2.3139 20 1 14.1724 -5.3496 1.3533 21 6 14.4301 -5.4414 3.4773 22 7 13.8294 -5.4655 4.6474 23 14 16.2946 -5.5060 3.3831 24 1 16.7987 -4.2841 2.7063 25 1 16.8574 -5.5801 4.7553 26 1 16.7101 -6.7056 2.6127 27 6 10.2683 -5.4320 1.2051 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3792 1.5834 -1.0276 32 1 1.6083 2.0283 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0088 -0.6532 0.8911 35 1 4.0095 -0.6536 -0.8888 36 1 3.7928 -3.1233 -0.8893 37 1 3.7921 -3.1238 0.8907 38 1 6.0485 -2.0962 0.8927 39 1 6.0499 -2.0956 -0.8872 40 1 7.7416 -6.0796 -0.8847 41 1 7.7395 -6.0789 0.8952 42 1 9.7338 -5.4613 -2.1246 43 1 12.1916 -5.3339 -2.1278 44 1 13.4249 -5.2566 0.0007 45 1 14.3547 -5.5165 5.4613 46 1 9.7276 -5.4604 2.1396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810877339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:41 Heat of formation + Delta-G solvation = -127.649328 kcal Electronic energy + Delta-G solvation = -27046.787367 eV Core-core repulsion = 22902.505591 eV Total energy + Delta-G solvation = -4144.281775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50068 -40.22206 -38.95721 -37.00108 -36.22222 -35.98610 -34.13744 -32.43352 -32.04507 -29.45814 -29.16387 -27.93125 -27.15287 -25.76436 -25.20763 -22.39982 -21.76037 -21.47290 -20.33230 -19.57088 -17.73548 -17.56906 -17.40888 -17.01485 -16.91272 -16.42929 -16.34655 -15.84721 -15.19832 -14.95427 -14.50993 -14.39586 -14.00951 -13.77916 -13.54594 -13.48657 -13.18677 -13.08894 -12.93042 -12.91720 -12.77584 -12.56741 -12.44920 -12.28285 -11.88613 -11.58068 -11.57398 -11.40375 -11.25987 -10.85077 -10.78932 -10.63095 -10.54983 -10.45308 -10.32649 -10.21682 -9.33520 -9.21212 -8.81725 -8.10244 -7.22058 -6.42134 -4.01391 1.97347 2.18193 2.36908 2.40400 2.46179 2.89762 3.14936 3.16365 3.18677 3.98564 4.01873 4.44963 4.48230 4.56714 4.63435 4.75780 4.78834 4.87577 4.95423 4.97927 5.04102 5.08319 5.10568 5.12365 5.19225 5.20227 5.35788 5.37700 5.51711 5.66016 5.71828 5.75295 5.86090 5.92957 5.94608 6.17061 6.33530 6.48574 6.66602 6.80760 6.91225 7.07525 7.24310 7.36600 7.44343 7.70229 7.81325 7.93265 8.02440 9.03298 9.73528 10.75905 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.001659 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.104599 B =16872.440448 C =17541.197406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.626 5.626 3 C 0.076 3.924 4 C 0.515 3.485 5 O -0.536 6.536 6 C -0.137 4.137 7 C -0.105 4.105 8 C 0.066 3.934 9 O -0.361 6.361 10 C 0.460 3.540 11 O -0.490 6.490 12 C -0.065 4.065 13 C -0.044 4.044 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.228 4.228 17 C 0.154 3.846 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.172 4.172 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.270 0.730 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.114 10.465 -10.706 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.361 5.361 3 C -0.068 4.068 4 C 0.303 3.697 5 O -0.412 6.412 6 C -0.177 4.177 7 C -0.143 4.143 8 C -0.008 4.008 9 O -0.279 6.279 10 C 0.302 3.698 11 O -0.376 6.376 12 C -0.102 4.102 13 C -0.044 4.044 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.247 4.247 17 C 0.100 3.900 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.191 4.191 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.080 0.920 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.240 10.242 -10.201 26.525 hybrid contribution 1.021 0.448 -0.094 1.119 sum -21.219 10.690 -10.295 25.895 Atomic orbital electron populations 1.21693 0.79137 1.04338 1.01254 1.47758 1.07301 1.06545 1.74471 1.21849 0.97487 0.85173 1.02242 1.20678 0.90303 0.83178 0.75507 1.90721 1.70344 1.30903 1.49255 1.21567 0.91914 0.99261 1.04950 1.21266 0.92355 0.95290 1.05377 1.22961 0.94122 0.80964 1.02720 1.86490 1.25131 1.31597 1.84636 1.23849 0.79999 0.93134 0.72773 1.90716 1.60133 1.42916 1.43823 1.20265 0.93156 0.90688 1.06080 1.18678 0.91521 1.00865 0.93374 1.20376 0.94188 1.10788 0.96022 1.20686 0.93801 0.97930 0.96872 1.21199 1.00690 1.10697 0.92102 1.19266 0.91506 0.92593 0.86623 1.83977 1.20611 1.78949 1.24660 1.21273 0.78130 1.52771 0.94670 0.89145 1.25277 1.00463 0.96560 0.94185 1.70028 1.36308 1.46056 0.97445 0.85785 0.80634 0.79162 0.77859 1.19534 1.20303 1.19508 1.19970 0.91770 1.10193 0.97170 0.89428 0.92194 0.92250 0.92245 0.90805 0.90545 0.88254 0.88352 0.89932 0.89848 0.91107 0.91234 0.87144 0.86999 0.87735 0.87333 0.85521 0.92010 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.68 59.85 0.64 1.07 16 2 N -0.63 -4.06 3.27 -189.52 -0.62 -4.68 16 3 C 0.08 0.24 10.29 59.85 0.62 0.85 16 4 C 0.51 4.57 7.67 -10.99 -0.08 4.49 16 5 O -0.54 -6.87 15.31 5.55 0.09 -6.78 16 6 C -0.14 -0.89 4.25 -27.89 -0.12 -1.01 16 7 C -0.10 -0.93 4.88 -26.74 -0.13 -1.06 16 8 C 0.07 0.70 5.47 37.15 0.20 0.90 16 9 O -0.36 -4.71 10.22 -39.25 -0.40 -5.11 16 10 C 0.46 7.01 7.95 36.01 0.29 7.29 16 11 O -0.49 -9.22 15.78 -18.75 -0.30 -9.52 16 12 C -0.06 -0.89 5.94 -29.03 -0.17 -1.06 16 13 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 14 C -0.19 -3.48 9.70 -39.53 -0.38 -3.86 16 15 C -0.07 -1.42 10.04 -39.61 -0.40 -1.81 16 16 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 17 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 19 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 20 H 0.09 2.37 5.21 -52.49 -0.27 2.09 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 23 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 C -0.17 -3.74 9.65 -39.39 -0.38 -4.12 16 28 H 0.09 0.65 6.90 -51.93 -0.36 0.29 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.14 8.07 -51.93 -0.42 -0.28 16 33 H 0.08 0.17 6.44 -51.93 -0.33 -0.16 16 34 H 0.10 0.48 7.40 -51.93 -0.38 0.10 16 35 H 0.10 0.46 8.11 -51.93 -0.42 0.04 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 39 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.11 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.11 1.34 8.08 -51.93 -0.42 0.92 16 42 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 44 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -36.54 393.89 -7.05 -43.59 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.68 Total: 2.18 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.80 Total: -11.30 kcal Atomic # 7 Polarization: -29.62 SS G_CDS: 0.14 Total: -29.48 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.61 Total: -26.60 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.54 -7.05 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810877339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.060 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds