Wall clock time and date at job start Tue Mar 31 2020 19:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99937 * 2 1 4 4 C 1.52997 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47152 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47031 * 54.99964 * 5 4 3 7 7 N 1.46507 * 109.46982 * 295.00255 * 5 4 3 8 8 C 1.34776 * 119.99540 * 154.99771 * 7 5 4 9 9 O 1.21272 * 120.00476 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99507 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.46920 * 179.97438 * 10 8 7 12 12 C 1.37638 * 120.12773 * 264.99353 * 11 10 8 13 13 C 1.38614 * 120.24992 * 179.70390 * 12 11 10 14 14 C 1.38662 * 120.49706 * 0.02562 * 13 12 11 15 15 C 1.37594 * 120.25321 * 0.02562 * 14 13 12 16 16 C 1.40702 * 120.13026 * 84.72118 * 11 10 8 17 17 C 1.41400 * 120.23969 * 0.25057 * 16 11 10 18 18 H 1.07990 * 120.00253 * 334.04466 * 17 16 11 19 19 C 1.39956 * 119.99758 * 154.03991 * 17 16 11 20 20 N 1.30823 * 119.99664 * 343.67404 * 19 17 16 21 21 Si 1.86795 * 119.99774 * 163.67226 * 19 17 16 22 22 H 1.48501 * 109.46857 * 90.00394 * 21 19 17 23 23 H 1.48495 * 109.47233 * 210.00092 * 21 19 17 24 24 H 1.48499 * 109.47182 * 330.00489 * 21 19 17 25 25 C 1.50694 * 109.47367 * 175.00419 * 5 4 3 26 26 O 1.20832 * 120.00372 * 120.00216 * 25 5 4 27 27 O 1.34233 * 119.99990 * 299.99692 * 25 5 4 28 28 C 1.45199 * 117.00018 * 180.02562 * 27 25 5 29 29 H 1.09000 * 109.47461 * 60.00161 * 1 2 3 30 30 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47203 * 299.99764 * 1 2 3 32 32 H 1.09002 * 109.46946 * 60.00207 * 3 2 1 33 33 H 1.08992 * 109.46901 * 300.00156 * 3 2 1 34 34 H 1.09006 * 109.47450 * 60.00339 * 4 3 2 35 35 H 1.08997 * 109.48177 * 300.00026 * 4 3 2 36 36 H 0.96998 * 120.00233 * 334.99998 * 7 5 4 37 37 H 1.09000 * 109.47529 * 59.99412 * 10 8 7 38 38 H 1.09009 * 109.46868 * 299.99270 * 10 8 7 39 39 H 1.08001 * 119.87503 * 359.73094 * 12 11 10 40 40 H 1.07992 * 119.75415 * 180.02562 * 13 12 11 41 41 H 1.08009 * 119.87023 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.12590 * 179.97438 * 15 14 13 43 43 H 0.97005 * 119.99322 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.46922 * 60.00203 * 28 27 25 45 45 H 1.08996 * 109.47066 * 180.02562 * 28 27 25 46 46 H 1.08996 * 109.47353 * 300.00310 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7667 3.1538 0.8431 7 7 3.8237 3.2662 -1.2505 8 6 3.8032 4.6130 -1.2978 9 8 4.0617 5.2587 -0.3044 10 6 3.4589 5.3165 -2.5854 11 6 3.5059 6.8074 -2.3712 12 6 2.3546 7.4987 -2.0698 13 6 2.3960 8.8692 -1.8663 14 6 3.5947 9.5593 -1.9641 15 6 4.7579 8.8889 -2.2654 16 6 4.7280 7.4973 -2.4730 17 6 5.9173 6.7976 -2.7817 18 1 6.0061 5.7495 -2.5372 19 6 6.9793 7.4633 -3.4043 20 7 6.7769 8.6177 -3.9856 21 14 8.6858 6.7035 -3.4051 22 1 8.8451 5.8459 -4.6069 23 1 9.7073 7.7810 -3.4270 24 1 8.8614 5.8797 -2.1822 25 6 5.6550 2.4655 0.1256 26 8 6.3698 2.9081 -0.7422 27 8 6.1948 1.8697 1.2007 28 6 7.6438 1.7934 1.2539 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8574 0.6435 -0.8892 35 1 3.8568 0.6438 0.8908 36 1 3.6172 2.7498 -2.0452 37 1 2.4567 5.0265 -2.9012 38 1 4.1778 5.0368 -3.3556 39 1 1.4154 6.9713 -1.9911 40 1 1.4878 9.4036 -1.6298 41 1 3.6154 10.6271 -1.8031 42 1 5.6903 9.4285 -2.3415 43 1 7.5131 9.0792 -4.4168 44 1 8.0615 2.7999 1.2363 45 1 7.9475 1.2895 2.1715 46 1 8.0100 1.2329 0.3938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812395319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:03 Heat of formation + Delta-G solvation = -151.772207 kcal Electronic energy + Delta-G solvation = -29452.644935 eV Core-core repulsion = 25307.317113 eV Total energy + Delta-G solvation = -4145.327822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68247 -39.17567 -38.21598 -37.35104 -36.37045 -35.25047 -33.55932 -32.14906 -31.27180 -29.40576 -28.71267 -27.35237 -26.60401 -25.56729 -24.82373 -22.43861 -21.32205 -20.87121 -20.37546 -19.35751 -17.82138 -17.16052 -17.01423 -16.81888 -16.45770 -16.19253 -16.00374 -15.38941 -15.26551 -15.13838 -14.46498 -14.42571 -13.79171 -13.58600 -13.38272 -13.33547 -13.10798 -12.97754 -12.52134 -12.26519 -12.12424 -11.95385 -11.69264 -11.55431 -11.50623 -11.38051 -11.13623 -11.00541 -10.90623 -10.75393 -10.64177 -10.47938 -10.33327 -9.95046 -9.44168 -9.34909 -9.26929 -9.08745 -8.99382 -7.27553 -7.24125 -6.67995 -4.27468 2.26204 2.48618 2.84530 3.00953 3.12473 3.21949 3.33354 3.34360 3.41149 3.57519 4.02704 4.57991 4.64548 4.71357 4.73220 4.95437 5.04872 5.09411 5.10989 5.18472 5.21762 5.23799 5.39672 5.48947 5.51458 5.67572 5.71620 5.81892 6.03845 6.14913 6.30550 6.36296 6.45737 6.53393 6.54438 6.83858 6.84525 7.16235 7.34253 7.46958 7.67350 7.78254 7.82433 7.97104 8.14040 8.18100 8.37179 8.70817 8.76291 8.98493 9.07030 10.26089 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.004109 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.486088 B = 6812.974271 C = 8874.700534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.126 0.874 7 N -0.727 5.727 8 C 0.522 3.478 9 O -0.514 6.514 10 C -0.068 4.068 11 C -0.185 4.185 12 C -0.080 4.080 13 C -0.242 4.242 14 C -0.106 4.106 15 C -0.160 4.160 16 C 0.130 3.870 17 C -0.453 4.453 18 H 0.077 0.923 19 C 0.078 3.922 20 N -0.796 5.796 21 Si 0.900 3.100 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.260 1.260 25 C 0.444 3.556 26 O -0.480 6.480 27 O -0.362 6.362 28 C 0.036 3.964 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.403 0.597 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 -16.423 6.182 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.144 0.856 7 N -0.383 5.383 8 C 0.311 3.689 9 O -0.386 6.386 10 C -0.107 4.107 11 C -0.186 4.186 12 C -0.098 4.098 13 C -0.261 4.261 14 C -0.125 4.125 15 C -0.179 4.179 16 C 0.128 3.872 17 C -0.483 4.483 18 H 0.096 0.904 19 C -0.139 4.139 20 N -0.421 5.421 21 Si 0.725 3.275 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.184 1.184 25 C 0.283 3.717 26 O -0.364 6.364 27 O -0.279 6.279 28 C -0.058 4.058 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.238 0.762 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.118 0.882 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.354 -15.758 6.504 17.868 hybrid contribution 0.884 -0.191 -0.467 1.018 sum -4.469 -15.949 6.037 17.629 Atomic orbital electron populations 1.22748 0.80718 1.02725 1.00268 1.87836 1.19942 1.27858 1.95529 1.22486 0.92788 0.84751 1.01374 1.21677 0.94309 0.94191 1.05523 1.20208 0.87156 0.95207 0.91862 0.85609 1.46068 1.72923 1.07398 1.11882 1.21393 0.75202 0.80502 0.91843 1.90685 1.46072 1.65072 1.36819 1.20247 1.01741 0.94644 0.94097 1.19025 0.93756 0.91668 1.14196 1.20277 0.95731 0.94074 0.99725 1.20280 0.96590 0.94236 1.15028 1.20670 0.93720 0.97320 1.00784 1.21290 0.97027 0.95148 1.04440 1.17340 0.91035 0.91764 0.87100 1.19549 0.97507 0.97620 1.33602 0.90450 1.25869 1.00714 0.94393 0.92951 1.69830 1.33448 1.13946 1.24909 0.86424 0.81521 0.79622 0.79933 1.19525 1.20200 1.18366 1.24342 0.92829 0.74833 0.79701 1.90750 1.62578 1.42723 1.40354 1.86469 1.24833 1.72275 1.44308 1.23241 0.76724 1.02920 1.02950 0.93856 0.89631 0.93945 0.92593 0.92385 0.89810 0.88237 0.76174 0.90450 0.88295 0.89811 0.89727 0.89645 0.86593 0.91042 0.91757 0.88222 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.84 10.70 -35.23 -0.38 -4.22 16 3 C 0.06 0.57 5.83 37.16 0.22 0.78 16 4 C -0.12 -1.12 5.09 -26.73 -0.14 -1.26 16 5 C 0.16 2.14 2.48 -69.08 -0.17 1.96 16 6 H 0.13 1.70 7.58 -51.93 -0.39 1.31 16 7 N -0.73 -10.43 4.06 -54.93 -0.22 -10.65 16 8 C 0.52 10.09 7.28 -10.98 -0.08 10.01 16 9 O -0.51 -12.20 15.70 5.56 0.09 -12.11 16 10 C -0.07 -1.33 5.18 -29.03 -0.15 -1.48 16 11 C -0.18 -4.48 4.43 -103.91 -0.46 -4.94 16 12 C -0.08 -1.84 9.66 -39.66 -0.38 -2.22 16 13 C -0.24 -5.68 10.05 -39.29 -0.39 -6.07 16 14 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 15 C -0.16 -4.36 8.68 -38.88 -0.34 -4.70 16 16 C 0.13 3.56 5.56 -106.82 -0.59 2.97 16 17 C -0.45 -12.45 8.15 -37.74 -0.31 -12.75 16 18 H 0.08 2.14 6.67 -52.49 -0.35 1.79 16 19 C 0.08 2.05 5.16 -17.34 -0.09 1.96 16 20 N -0.80 -21.16 10.97 55.55 0.61 -20.55 16 21 Si 0.90 20.12 29.59 -169.99 -5.03 15.09 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.44 6.97 7.29 36.00 0.26 7.23 16 26 O -0.48 -9.48 16.07 -18.75 -0.30 -9.78 16 27 O -0.36 -4.87 10.37 -39.27 -0.41 -5.27 16 28 C 0.04 0.40 10.56 101.05 1.07 1.46 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.51 7.75 -51.93 -0.40 0.10 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.87 7.99 -51.93 -0.42 0.46 16 36 H 0.40 4.55 8.60 -40.82 -0.35 4.20 16 37 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.10 1.97 7.07 -51.92 -0.37 1.60 16 39 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 42 H 0.12 3.26 6.22 -52.49 -0.33 2.94 16 43 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 44 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -34.82 392.73 -7.38 -42.20 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.81 Total: 8.12 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.84 Total: -8.75 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.39 Total: -31.20 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.00 Total: -31.38 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.82 -7.38 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812395319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.573 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds