Wall clock time and date at job start Tue Mar 31 2020 19:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99937 * 2 1 4 4 C 1.52997 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47152 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47031 * 54.99964 * 5 4 3 7 7 N 1.46507 * 109.46982 * 295.00255 * 5 4 3 8 8 C 1.34776 * 119.99540 * 154.99771 * 7 5 4 9 9 O 1.21272 * 120.00476 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99507 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.46920 * 179.97438 * 10 8 7 12 12 C 1.37638 * 120.12773 * 264.99353 * 11 10 8 13 13 C 1.38614 * 120.24992 * 179.70390 * 12 11 10 14 14 C 1.38662 * 120.49706 * 0.02562 * 13 12 11 15 15 C 1.37594 * 120.25321 * 0.02562 * 14 13 12 16 16 C 1.40702 * 120.13026 * 84.72118 * 11 10 8 17 17 C 1.41400 * 120.23969 * 0.25057 * 16 11 10 18 18 H 1.07990 * 120.00253 * 334.04466 * 17 16 11 19 19 C 1.39956 * 119.99758 * 154.03991 * 17 16 11 20 20 N 1.30823 * 119.99664 * 343.67404 * 19 17 16 21 21 Si 1.86795 * 119.99774 * 163.67226 * 19 17 16 22 22 H 1.48501 * 109.46857 * 90.00394 * 21 19 17 23 23 H 1.48495 * 109.47233 * 210.00092 * 21 19 17 24 24 H 1.48499 * 109.47182 * 330.00489 * 21 19 17 25 25 C 1.50694 * 109.47367 * 175.00419 * 5 4 3 26 26 O 1.20832 * 120.00372 * 120.00216 * 25 5 4 27 27 O 1.34233 * 119.99990 * 299.99692 * 25 5 4 28 28 C 1.45199 * 117.00018 * 180.02562 * 27 25 5 29 29 H 1.09000 * 109.47461 * 60.00161 * 1 2 3 30 30 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47203 * 299.99764 * 1 2 3 32 32 H 1.09002 * 109.46946 * 60.00207 * 3 2 1 33 33 H 1.08992 * 109.46901 * 300.00156 * 3 2 1 34 34 H 1.09006 * 109.47450 * 60.00339 * 4 3 2 35 35 H 1.08997 * 109.48177 * 300.00026 * 4 3 2 36 36 H 0.96998 * 120.00233 * 334.99998 * 7 5 4 37 37 H 1.09000 * 109.47529 * 59.99412 * 10 8 7 38 38 H 1.09009 * 109.46868 * 299.99270 * 10 8 7 39 39 H 1.08001 * 119.87503 * 359.73094 * 12 11 10 40 40 H 1.07992 * 119.75415 * 180.02562 * 13 12 11 41 41 H 1.08009 * 119.87023 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.12590 * 179.97438 * 15 14 13 43 43 H 0.97005 * 119.99322 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.46922 * 60.00203 * 28 27 25 45 45 H 1.08996 * 109.47066 * 180.02562 * 28 27 25 46 46 H 1.08996 * 109.47353 * 300.00310 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7667 3.1538 0.8431 7 7 3.8237 3.2662 -1.2505 8 6 3.8032 4.6130 -1.2978 9 8 4.0617 5.2587 -0.3044 10 6 3.4589 5.3165 -2.5854 11 6 3.5059 6.8074 -2.3712 12 6 2.3546 7.4987 -2.0698 13 6 2.3960 8.8692 -1.8663 14 6 3.5947 9.5593 -1.9641 15 6 4.7579 8.8889 -2.2654 16 6 4.7280 7.4973 -2.4730 17 6 5.9173 6.7976 -2.7817 18 1 6.0061 5.7495 -2.5372 19 6 6.9793 7.4633 -3.4043 20 7 6.7769 8.6177 -3.9856 21 14 8.6858 6.7035 -3.4051 22 1 8.8451 5.8459 -4.6069 23 1 9.7073 7.7810 -3.4270 24 1 8.8614 5.8797 -2.1822 25 6 5.6550 2.4655 0.1256 26 8 6.3698 2.9081 -0.7422 27 8 6.1948 1.8697 1.2007 28 6 7.6438 1.7934 1.2539 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8574 0.6435 -0.8892 35 1 3.8568 0.6438 0.8908 36 1 3.6172 2.7498 -2.0452 37 1 2.4567 5.0265 -2.9012 38 1 4.1778 5.0368 -3.3556 39 1 1.4154 6.9713 -1.9911 40 1 1.4878 9.4036 -1.6298 41 1 3.6154 10.6271 -1.8031 42 1 5.6903 9.4285 -2.3415 43 1 7.5131 9.0792 -4.4168 44 1 8.0615 2.7999 1.2363 45 1 7.9475 1.2895 2.1715 46 1 8.0100 1.2329 0.3938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812395319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:02 Heat of formation + Delta-G solvation = -174.439033 kcal Electronic energy + Delta-G solvation = -29453.627842 eV Core-core repulsion = 25307.317113 eV Total energy + Delta-G solvation = -4146.310729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92378 -40.64245 -39.26110 -38.81533 -37.63414 -36.46099 -35.51284 -33.67261 -32.62678 -31.34063 -29.69665 -28.65979 -27.71708 -26.87800 -26.29004 -23.30313 -22.85906 -22.68514 -21.67001 -21.05132 -19.09159 -18.95691 -18.21255 -18.08939 -17.45207 -17.32073 -17.18753 -16.85827 -16.51052 -16.17470 -15.98852 -15.82319 -15.38929 -15.03651 -14.69861 -14.59248 -14.40352 -14.36719 -14.12867 -13.52255 -13.39564 -13.12581 -13.04520 -12.91630 -12.79998 -12.75714 -12.68872 -12.50282 -12.28763 -12.16157 -12.06244 -11.86777 -11.76658 -11.32117 -11.22189 -11.04748 -10.88356 -10.59963 -10.30744 -9.21958 -9.16179 -8.62541 -6.30282 0.96770 1.04174 1.11484 1.28867 1.36491 1.41190 1.49159 1.93957 2.16936 2.23441 2.73835 2.76611 3.66484 3.72650 3.78361 3.86510 4.08956 4.19554 4.24766 4.26632 4.29405 4.41875 4.47459 4.53929 4.60383 4.61036 4.62189 4.64162 4.72656 4.81371 4.89427 4.92754 4.98402 5.07264 5.19850 5.22597 5.31362 5.37263 5.54950 5.77841 6.03717 6.17545 6.22168 6.22461 6.42209 6.50927 6.61830 6.75007 6.98854 7.11040 7.31805 8.33753 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.004109 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.486088 B = 6812.974271 C = 8874.700534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.064 3.936 4 C -0.105 4.105 5 C 0.166 3.834 6 H 0.124 0.876 7 N -0.708 5.708 8 C 0.527 3.473 9 O -0.566 6.566 10 C -0.069 4.069 11 C -0.188 4.188 12 C -0.087 4.087 13 C -0.240 4.240 14 C -0.117 4.117 15 C -0.195 4.195 16 C 0.096 3.904 17 C -0.481 4.481 18 H 0.064 0.936 19 C 0.041 3.959 20 N -0.824 5.824 21 Si 0.963 3.037 22 H -0.256 1.256 23 H -0.262 1.262 24 H -0.279 1.279 25 C 0.443 3.557 26 O -0.529 6.529 27 O -0.356 6.356 28 C 0.028 3.972 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.420 0.580 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.286 0.714 44 H 0.044 0.956 45 H 0.141 0.859 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 -18.448 6.503 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.013 4.013 4 C -0.143 4.143 5 C 0.058 3.942 6 H 0.142 0.858 7 N -0.363 5.363 8 C 0.315 3.685 9 O -0.443 6.443 10 C -0.108 4.108 11 C -0.190 4.190 12 C -0.105 4.105 13 C -0.259 4.259 14 C -0.135 4.135 15 C -0.214 4.214 16 C 0.094 3.906 17 C -0.511 4.511 18 H 0.082 0.918 19 C -0.174 4.174 20 N -0.450 5.450 21 Si 0.785 3.215 22 H -0.180 1.180 23 H -0.186 1.186 24 H -0.204 1.204 25 C 0.284 3.716 26 O -0.417 6.417 27 O -0.272 6.272 28 C -0.065 4.065 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.258 0.742 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.159 0.841 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.036 -17.835 6.810 20.346 hybrid contribution 1.271 0.394 -0.479 1.415 sum -5.765 -17.441 6.331 19.429 Atomic orbital electron populations 1.22930 0.79390 1.03865 1.00889 1.87800 1.21427 1.27994 1.95656 1.22458 0.92188 0.84826 1.01827 1.21586 0.94634 0.91541 1.06528 1.20395 0.85861 0.97068 0.90854 0.85845 1.45779 1.71197 1.06035 1.13287 1.21215 0.74564 0.81841 0.90839 1.90667 1.48687 1.66538 1.38372 1.20280 1.04216 0.92108 0.94207 1.19528 0.93117 0.94195 1.12149 1.20750 0.96916 0.94286 0.98569 1.20740 0.97117 0.94832 1.13218 1.20954 0.93627 0.98524 1.00404 1.21284 0.97287 0.95745 1.07118 1.17709 0.92478 0.92218 0.88183 1.19585 0.98965 0.97241 1.35337 0.91791 1.26523 1.03648 0.94856 0.92370 1.69870 1.34633 1.14927 1.25593 0.85504 0.77710 0.78998 0.79318 1.18031 1.18576 1.20397 1.24857 0.93695 0.73681 0.79326 1.90739 1.63852 1.44942 1.42129 1.86469 1.26213 1.71392 1.43104 1.23533 0.75295 1.02360 1.05304 0.93216 0.88350 0.93337 0.92255 0.91911 0.88922 0.87122 0.74188 0.85927 0.88986 0.85911 0.86430 0.87699 0.88790 0.90363 0.93714 0.84113 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.95 10.70 -148.98 -1.59 -8.55 16 3 C 0.06 0.99 5.83 71.98 0.42 1.41 16 4 C -0.11 -1.74 5.09 30.59 0.16 -1.59 16 5 C 0.17 4.14 2.48 44.24 0.11 4.25 16 6 H 0.12 3.24 7.58 -2.39 -0.02 3.22 16 7 N -0.71 -19.44 4.06 -446.09 -1.81 -21.26 16 8 C 0.53 20.10 7.28 87.66 0.64 20.74 16 9 O -0.57 -27.21 15.70 -3.01 -0.05 -27.25 16 10 C -0.07 -2.62 5.18 29.10 0.15 -2.47 16 11 C -0.19 -9.09 4.43 -19.40 -0.09 -9.17 16 12 C -0.09 -3.84 9.66 22.22 0.21 -3.63 16 13 C -0.24 -10.81 10.05 22.46 0.23 -10.59 16 14 C -0.12 -5.81 10.02 22.22 0.22 -5.58 16 15 C -0.19 -11.03 8.68 22.73 0.20 -10.84 16 16 C 0.10 5.44 5.56 -21.29 -0.12 5.32 16 17 C -0.48 -27.57 8.15 23.47 0.19 -27.38 16 18 H 0.06 3.71 6.67 -2.92 -0.02 3.69 16 19 C 0.04 2.20 5.16 85.26 0.44 2.64 16 20 N -0.82 -45.38 10.97 21.83 0.24 -45.14 16 21 Si 0.96 42.71 29.59 68.60 2.03 44.74 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 C 0.44 13.79 7.29 71.23 0.52 14.31 16 26 O -0.53 -21.30 16.07 21.95 0.35 -20.95 16 27 O -0.36 -9.23 10.37 -51.45 -0.53 -9.76 16 28 C 0.03 0.61 10.56 113.37 1.20 1.80 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.11 1.66 7.99 -2.39 -0.02 1.64 16 36 H 0.42 8.64 8.60 -92.71 -0.80 7.84 16 37 H 0.12 3.47 8.05 -2.39 -0.02 3.45 16 38 H 0.09 3.66 7.07 -2.38 -0.02 3.65 16 39 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 41 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 42 H 0.09 5.60 6.22 -2.91 -0.02 5.58 16 43 H 0.29 14.29 8.30 -92.70 -0.77 13.52 16 44 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 45 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 Total: -1.00 -79.23 392.73 4.56 -74.67 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.20 Total: 32.74 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.73 Total: -19.24 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -1.57 Total: -66.40 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: -1.82 Total: -66.51 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -79.23 4.56 -74.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812395319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.767 kcal (2) G-P(sol) polarization free energy of solvation -79.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds