Wall clock time and date at job start Tue Mar 31 2020 19:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99959 * 2 1 4 4 C 1.52998 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46983 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47158 * 305.00353 * 5 4 3 7 7 N 1.46500 * 109.46585 * 65.00422 * 5 4 3 8 8 C 1.34779 * 119.99583 * 204.99556 * 7 5 4 9 9 O 1.21280 * 120.00377 * 0.02562 * 8 7 5 10 10 C 1.50707 * 119.99957 * 179.97438 * 8 7 5 11 11 C 1.50698 * 109.46846 * 180.02562 * 10 8 7 12 12 C 1.37634 * 120.12966 * 265.00044 * 11 10 8 13 13 C 1.38612 * 120.24888 * 179.97438 * 12 11 10 14 14 C 1.38658 * 120.50179 * 0.02562 * 13 12 11 15 15 C 1.37593 * 120.24739 * 0.02944 * 14 13 12 16 16 C 1.40694 * 120.12564 * 84.73416 * 11 10 8 17 17 C 1.41397 * 120.24419 * 359.97438 * 16 11 10 18 18 H 1.07996 * 120.00138 * 333.90676 * 17 16 11 19 19 C 1.39950 * 119.99752 * 153.90095 * 17 16 11 20 20 N 1.30825 * 120.00272 * 343.71078 * 19 17 16 21 21 Si 1.86802 * 119.99902 * 163.70939 * 19 17 16 22 22 H 1.48509 * 109.47158 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47304 * 119.99794 * 21 19 17 24 24 H 1.48500 * 109.47410 * 240.00378 * 21 19 17 25 25 C 1.50695 * 109.47082 * 184.99989 * 5 4 3 26 26 O 1.20824 * 120.00546 * 240.00580 * 25 5 4 27 27 O 1.34230 * 119.99854 * 60.00411 * 25 5 4 28 28 C 1.45204 * 117.00037 * 179.97438 * 27 25 5 29 29 H 1.08991 * 109.47036 * 299.99727 * 1 2 3 30 30 H 1.09006 * 109.47253 * 59.99970 * 1 2 3 31 31 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46552 * 60.00245 * 3 2 1 33 33 H 1.08995 * 109.47402 * 300.00535 * 3 2 1 34 34 H 1.09004 * 109.46673 * 60.00615 * 4 3 2 35 35 H 1.08995 * 109.47557 * 300.00558 * 4 3 2 36 36 H 0.96998 * 120.00759 * 24.99730 * 7 5 4 37 37 H 1.08994 * 109.47356 * 300.00617 * 10 8 7 38 38 H 1.09004 * 109.46333 * 60.00267 * 10 8 7 39 39 H 1.08000 * 119.87763 * 0.02562 * 12 11 10 40 40 H 1.08003 * 119.74627 * 180.02562 * 13 12 11 41 41 H 1.07998 * 119.87468 * 179.97438 * 14 13 12 42 42 H 1.07999 * 120.12563 * 179.97438 * 15 14 13 43 43 H 0.96998 * 120.00041 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.46827 * 180.02562 * 28 27 25 45 45 H 1.08999 * 109.46750 * 299.99757 * 28 27 25 46 46 H 1.08994 * 109.47122 * 59.99957 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 1 3.7674 3.1543 -0.8405 7 7 3.8226 3.2655 1.2532 8 6 3.8020 4.6122 1.3014 9 8 4.0606 5.2586 0.3083 10 6 3.4567 5.3150 2.5891 11 6 3.5040 6.8061 2.3758 12 6 4.6456 7.5117 2.6809 13 6 4.6920 8.8832 2.4852 14 6 3.5915 9.5599 1.9815 15 6 2.4393 8.8750 1.6707 16 6 2.3831 7.4814 1.8589 17 6 1.2070 6.7660 1.5361 18 1 1.2657 5.7194 1.2763 19 6 -0.0332 7.4141 1.5535 20 7 -0.1613 8.5652 2.1620 21 14 -1.5058 6.6358 0.7079 22 1 -1.1007 5.3436 0.0983 23 1 -2.5801 6.3969 1.7049 24 1 -2.0075 7.5476 -0.3515 25 6 5.6551 2.4657 -0.1219 26 8 6.3692 2.9077 0.7468 27 8 6.1957 1.8706 -1.1968 28 6 7.6448 1.7942 -1.2490 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6436 -0.8892 35 1 3.8568 0.6438 0.8907 36 1 3.6154 2.7486 2.0474 37 1 2.4543 5.0249 2.9038 38 1 4.1749 5.0348 3.3597 39 1 5.5088 6.9949 3.0734 40 1 5.5921 9.4288 2.7270 41 1 3.6386 10.6286 1.8335 42 1 1.5832 9.4040 1.2789 43 1 -1.0210 9.0142 2.1743 44 1 7.9493 1.2917 -2.1671 45 1 8.0625 2.8009 -1.2304 46 1 8.0103 1.2333 -0.3889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812395320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:07 Heat of formation + Delta-G solvation = -153.046817 kcal Electronic energy + Delta-G solvation = -29415.390006 eV Core-core repulsion = 25270.006913 eV Total energy + Delta-G solvation = -4145.383093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75976 -39.20271 -38.13787 -37.36935 -36.46061 -35.25660 -33.60765 -32.14369 -31.27063 -29.43123 -28.73847 -27.37716 -26.57337 -25.56065 -24.86003 -22.41854 -21.35690 -20.89394 -20.41117 -19.37207 -17.87619 -17.21431 -17.05851 -16.81717 -16.41891 -16.24421 -15.95951 -15.52826 -15.17018 -15.07034 -14.54074 -14.43649 -13.78646 -13.63568 -13.42910 -13.36778 -13.14122 -12.95750 -12.57692 -12.28341 -12.12564 -11.96174 -11.70096 -11.56702 -11.50748 -11.31576 -11.18218 -11.05744 -10.98514 -10.86516 -10.67388 -10.56877 -10.38783 -9.85437 -9.46169 -9.37647 -9.27827 -9.15649 -9.00502 -7.28396 -7.27472 -6.72643 -4.33377 2.15691 2.43047 2.78164 2.97650 3.05778 3.09153 3.27460 3.33531 3.44312 3.60232 3.92372 4.59561 4.65660 4.67629 4.74925 4.98679 4.99239 5.07211 5.14045 5.21619 5.29919 5.31478 5.41098 5.49576 5.50762 5.71404 5.74034 5.82769 6.03902 6.13938 6.27031 6.33283 6.42515 6.51791 6.54791 6.81705 6.93064 7.09416 7.32256 7.44672 7.64634 7.71201 7.76971 7.96010 8.08396 8.15796 8.33363 8.65838 8.75188 8.92821 9.03448 10.21583 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.004484 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.781204 B = 6243.584007 C = 8889.263619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.060 3.940 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.129 0.871 7 N -0.726 5.726 8 C 0.523 3.477 9 O -0.514 6.514 10 C -0.068 4.068 11 C -0.181 4.181 12 C -0.080 4.080 13 C -0.238 4.238 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.129 3.871 17 C -0.457 4.457 18 H 0.074 0.926 19 C 0.077 3.923 20 N -0.795 5.795 21 Si 0.902 3.098 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.272 1.272 25 C 0.450 3.550 26 O -0.491 6.491 27 O -0.360 6.360 28 C 0.036 3.964 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.404 0.596 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -16.278 -3.755 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.156 4.156 5 C 0.054 3.946 6 H 0.146 0.854 7 N -0.382 5.382 8 C 0.311 3.689 9 O -0.387 6.387 10 C -0.108 4.108 11 C -0.183 4.183 12 C -0.098 4.098 13 C -0.258 4.258 14 C -0.126 4.126 15 C -0.178 4.178 16 C 0.127 3.873 17 C -0.487 4.487 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.421 5.421 21 Si 0.727 3.273 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.197 1.197 25 C 0.290 3.710 26 O -0.376 6.376 27 O -0.276 6.276 28 C -0.058 4.058 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.239 0.761 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.611 -15.621 -4.163 16.565 hybrid contribution -0.680 -0.178 0.043 0.704 sum 2.931 -15.799 -4.119 16.588 Atomic orbital electron populations 1.22755 0.80629 1.02636 1.00492 1.87809 1.20021 1.27836 1.95579 1.22504 0.92599 0.84782 1.01739 1.21667 0.94515 0.93996 1.05395 1.20239 0.86878 0.95448 0.92065 0.85394 1.46048 1.72888 1.07397 1.11880 1.21378 0.75045 0.80499 0.91942 1.90687 1.46211 1.65057 1.36736 1.20250 1.02866 0.94629 0.93020 1.19041 0.96795 0.91662 1.10818 1.20327 0.95641 0.94030 0.99825 1.20316 0.98310 0.94243 1.12898 1.20682 0.94256 0.97377 1.00238 1.21291 0.96860 0.94997 1.04693 1.17336 0.91118 0.91838 0.87041 1.19474 0.90587 0.97456 1.41149 0.90806 1.25872 1.00530 0.94517 0.93112 1.69829 1.26102 1.14515 1.31633 0.86369 0.80722 0.80370 0.79866 1.18617 1.20062 1.19734 1.24388 0.92838 0.74350 0.79424 1.90676 1.62830 1.43568 1.40562 1.86495 1.24799 1.72144 1.44193 1.23246 0.76735 1.02783 1.03055 0.93731 0.93885 0.89655 0.92188 0.92452 0.88264 0.89879 0.76146 0.88383 0.90278 0.89712 0.89672 0.89590 0.86517 0.91046 0.88148 0.91864 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.33 10.70 -35.23 -0.38 -4.71 16 3 C 0.06 0.64 5.83 37.16 0.22 0.85 16 4 C -0.12 -1.16 5.09 -26.73 -0.14 -1.30 16 5 C 0.16 2.12 2.48 -69.08 -0.17 1.95 16 6 H 0.13 1.81 7.58 -51.93 -0.39 1.42 16 7 N -0.73 -10.50 4.06 -54.93 -0.22 -10.72 16 8 C 0.52 10.15 7.27 -10.98 -0.08 10.07 16 9 O -0.51 -12.23 15.70 5.56 0.09 -12.14 16 10 C -0.07 -1.34 5.18 -29.03 -0.15 -1.49 16 11 C -0.18 -4.40 4.43 -103.92 -0.46 -4.86 16 12 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 13 C -0.24 -5.68 10.05 -39.29 -0.39 -6.07 16 14 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 15 C -0.16 -4.27 8.69 -38.87 -0.34 -4.60 16 16 C 0.13 3.44 5.56 -106.82 -0.59 2.84 16 17 C -0.46 -11.80 8.14 -37.74 -0.31 -12.10 16 18 H 0.07 1.83 6.67 -52.49 -0.35 1.48 16 19 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 20 N -0.80 -20.33 10.96 55.55 0.61 -19.73 16 21 Si 0.90 18.38 29.59 -169.99 -5.03 13.35 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 25 C 0.45 6.59 7.29 36.00 0.26 6.86 16 26 O -0.49 -8.70 16.07 -18.75 -0.30 -9.00 16 27 O -0.36 -4.50 10.37 -39.26 -0.41 -4.91 16 28 C 0.04 0.35 10.56 101.05 1.07 1.41 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.64 7.75 -51.92 -0.40 0.24 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.90 8.00 -51.93 -0.42 0.48 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.59 8.60 -40.82 -0.35 4.24 16 37 H 0.10 1.83 7.08 -51.93 -0.37 1.47 16 38 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 39 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.21 6.21 -52.49 -0.33 2.88 16 43 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 46 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -33.44 392.70 -7.38 -40.81 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.81 Total: 9.69 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.84 Total: -8.57 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.39 Total: -30.45 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.00 Total: -30.76 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.44 -7.38 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812395320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.233 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds