Wall clock time and date at job start Tue Mar 31 2020 19:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99959 * 2 1 4 4 C 1.52998 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46983 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47158 * 305.00353 * 5 4 3 7 7 N 1.46500 * 109.46585 * 65.00422 * 5 4 3 8 8 C 1.34779 * 119.99583 * 204.99556 * 7 5 4 9 9 O 1.21280 * 120.00377 * 0.02562 * 8 7 5 10 10 C 1.50707 * 119.99957 * 179.97438 * 8 7 5 11 11 C 1.50698 * 109.46846 * 180.02562 * 10 8 7 12 12 C 1.37634 * 120.12966 * 265.00044 * 11 10 8 13 13 C 1.38612 * 120.24888 * 179.97438 * 12 11 10 14 14 C 1.38658 * 120.50179 * 0.02562 * 13 12 11 15 15 C 1.37593 * 120.24739 * 0.02944 * 14 13 12 16 16 C 1.40694 * 120.12564 * 84.73416 * 11 10 8 17 17 C 1.41397 * 120.24419 * 359.97438 * 16 11 10 18 18 H 1.07996 * 120.00138 * 333.90676 * 17 16 11 19 19 C 1.39950 * 119.99752 * 153.90095 * 17 16 11 20 20 N 1.30825 * 120.00272 * 343.71078 * 19 17 16 21 21 Si 1.86802 * 119.99902 * 163.70939 * 19 17 16 22 22 H 1.48509 * 109.47158 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47304 * 119.99794 * 21 19 17 24 24 H 1.48500 * 109.47410 * 240.00378 * 21 19 17 25 25 C 1.50695 * 109.47082 * 184.99989 * 5 4 3 26 26 O 1.20824 * 120.00546 * 240.00580 * 25 5 4 27 27 O 1.34230 * 119.99854 * 60.00411 * 25 5 4 28 28 C 1.45204 * 117.00037 * 179.97438 * 27 25 5 29 29 H 1.08991 * 109.47036 * 299.99727 * 1 2 3 30 30 H 1.09006 * 109.47253 * 59.99970 * 1 2 3 31 31 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46552 * 60.00245 * 3 2 1 33 33 H 1.08995 * 109.47402 * 300.00535 * 3 2 1 34 34 H 1.09004 * 109.46673 * 60.00615 * 4 3 2 35 35 H 1.08995 * 109.47557 * 300.00558 * 4 3 2 36 36 H 0.96998 * 120.00759 * 24.99730 * 7 5 4 37 37 H 1.08994 * 109.47356 * 300.00617 * 10 8 7 38 38 H 1.09004 * 109.46333 * 60.00267 * 10 8 7 39 39 H 1.08000 * 119.87763 * 0.02562 * 12 11 10 40 40 H 1.08003 * 119.74627 * 180.02562 * 13 12 11 41 41 H 1.07998 * 119.87468 * 179.97438 * 14 13 12 42 42 H 1.07999 * 120.12563 * 179.97438 * 15 14 13 43 43 H 0.96998 * 120.00041 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.46827 * 180.02562 * 28 27 25 45 45 H 1.08999 * 109.46750 * 299.99757 * 28 27 25 46 46 H 1.08994 * 109.47122 * 59.99957 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 1 3.7674 3.1543 -0.8405 7 7 3.8226 3.2655 1.2532 8 6 3.8020 4.6122 1.3014 9 8 4.0606 5.2586 0.3083 10 6 3.4567 5.3150 2.5891 11 6 3.5040 6.8061 2.3758 12 6 4.6456 7.5117 2.6809 13 6 4.6920 8.8832 2.4852 14 6 3.5915 9.5599 1.9815 15 6 2.4393 8.8750 1.6707 16 6 2.3831 7.4814 1.8589 17 6 1.2070 6.7660 1.5361 18 1 1.2657 5.7194 1.2763 19 6 -0.0332 7.4141 1.5535 20 7 -0.1613 8.5652 2.1620 21 14 -1.5058 6.6358 0.7079 22 1 -1.1007 5.3436 0.0983 23 1 -2.5801 6.3969 1.7049 24 1 -2.0075 7.5476 -0.3515 25 6 5.6551 2.4657 -0.1219 26 8 6.3692 2.9077 0.7468 27 8 6.1957 1.8706 -1.1968 28 6 7.6448 1.7942 -1.2490 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6436 -0.8892 35 1 3.8568 0.6438 0.8907 36 1 3.6154 2.7486 2.0474 37 1 2.4543 5.0249 2.9038 38 1 4.1749 5.0348 3.3597 39 1 5.5088 6.9949 3.0734 40 1 5.5921 9.4288 2.7270 41 1 3.6386 10.6286 1.8335 42 1 1.5832 9.4040 1.2789 43 1 -1.0210 9.0142 2.1743 44 1 7.9493 1.2917 -2.1671 45 1 8.0625 2.8009 -1.2304 46 1 8.0103 1.2333 -0.3889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812395320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:06 Heat of formation + Delta-G solvation = -173.982417 kcal Electronic energy + Delta-G solvation = -29416.297842 eV Core-core repulsion = 25270.006913 eV Total energy + Delta-G solvation = -4146.290929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92420 -40.64459 -39.26701 -38.83623 -37.62356 -36.46211 -35.48614 -33.67840 -32.64004 -31.33284 -29.69915 -28.65349 -27.72795 -26.88332 -26.29890 -23.32023 -22.87245 -22.67949 -21.67262 -21.05783 -19.08275 -18.93714 -18.20583 -18.09870 -17.47465 -17.31876 -17.18550 -16.88883 -16.41804 -16.21233 -15.99597 -15.85601 -15.39629 -15.02816 -14.69666 -14.60858 -14.38697 -14.33944 -14.11956 -13.54754 -13.36403 -13.11410 -13.04302 -12.90049 -12.76589 -12.73503 -12.68456 -12.48784 -12.30992 -12.10148 -12.08675 -11.84613 -11.77154 -11.32553 -11.20846 -11.01839 -10.88499 -10.64040 -10.30981 -9.22671 -9.16964 -8.57630 -6.27779 0.98471 1.02569 1.12016 1.36823 1.38220 1.51486 1.54160 1.89818 2.21503 2.25458 2.71575 2.80285 3.66348 3.71478 3.77430 3.85777 4.07865 4.18581 4.27573 4.28468 4.30074 4.39535 4.46324 4.51984 4.56328 4.58688 4.61053 4.67390 4.70140 4.79887 4.87037 4.88711 4.96215 5.05219 5.21345 5.22392 5.30208 5.37449 5.55182 5.77854 6.04302 6.16748 6.17139 6.21529 6.42374 6.50471 6.60683 6.74459 7.00496 7.11909 7.31289 8.39186 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.004484 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.781204 B = 6243.584007 C = 8889.263619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.060 3.940 4 C -0.103 4.103 5 C 0.162 3.838 6 H 0.118 0.882 7 N -0.708 5.708 8 C 0.527 3.473 9 O -0.566 6.566 10 C -0.068 4.068 11 C -0.188 4.188 12 C -0.093 4.093 13 C -0.245 4.245 14 C -0.117 4.117 15 C -0.193 4.193 16 C 0.099 3.901 17 C -0.479 4.479 18 H 0.077 0.923 19 C 0.036 3.964 20 N -0.827 5.827 21 Si 0.972 3.028 22 H -0.255 1.255 23 H -0.262 1.262 24 H -0.272 1.272 25 C 0.452 3.548 26 O -0.527 6.527 27 O -0.357 6.357 28 C 0.028 3.972 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.420 0.580 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.285 0.715 44 H 0.137 0.863 45 H 0.050 0.950 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -18.794 -3.905 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.017 4.017 4 C -0.141 4.141 5 C 0.054 3.946 6 H 0.135 0.865 7 N -0.363 5.363 8 C 0.316 3.684 9 O -0.443 6.443 10 C -0.108 4.108 11 C -0.190 4.190 12 C -0.111 4.111 13 C -0.264 4.264 14 C -0.135 4.135 15 C -0.212 4.212 16 C 0.096 3.904 17 C -0.509 4.509 18 H 0.095 0.905 19 C -0.179 4.179 20 N -0.453 5.453 21 Si 0.793 3.207 22 H -0.179 1.179 23 H -0.187 1.187 24 H -0.197 1.197 25 C 0.294 3.706 26 O -0.415 6.415 27 O -0.273 6.273 28 C -0.065 4.065 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.259 0.741 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.155 0.845 45 H 0.069 0.931 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.564 -18.196 -4.295 19.033 hybrid contribution -0.562 0.576 0.086 0.810 sum 3.002 -17.619 -4.210 18.362 Atomic orbital electron populations 1.22935 0.79564 1.03964 1.00701 1.87782 1.21233 1.27772 1.95630 1.22484 0.92883 0.84836 1.01491 1.21582 0.93940 0.91796 1.06787 1.20367 0.86552 0.96894 0.90767 0.86460 1.45755 1.71257 1.06024 1.13277 1.21200 0.74450 0.81837 0.90945 1.90669 1.48903 1.66524 1.38174 1.20269 1.04254 0.92092 0.94138 1.19507 0.96124 0.94167 1.09212 1.20717 0.96357 0.94377 0.99691 1.20681 0.98874 0.94728 1.12130 1.20940 0.94036 0.98494 1.00039 1.21315 0.97301 0.95753 1.06847 1.17729 0.92538 0.92147 0.87951 1.19667 0.91208 0.97771 1.42261 0.90520 1.26707 1.03136 0.94897 0.93131 1.69895 1.27222 1.15805 1.32400 0.85309 0.77112 0.79496 0.78757 1.17860 1.18660 1.19748 1.24552 0.93143 0.73626 0.79317 1.90661 1.63690 1.45238 1.41915 1.86486 1.26523 1.71303 1.42979 1.23566 0.74957 1.02663 1.05318 0.93562 0.93647 0.87870 0.92440 0.92831 0.86888 0.88432 0.74147 0.87587 0.87437 0.87333 0.87024 0.87713 0.88357 0.90408 0.84471 0.93118 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.01 10.70 -148.98 -1.59 -9.61 16 3 C 0.06 1.15 5.83 71.98 0.42 1.57 16 4 C -0.10 -1.81 5.09 30.60 0.16 -1.65 16 5 C 0.16 4.05 2.48 44.25 0.11 4.16 16 6 H 0.12 3.28 7.58 -2.39 -0.02 3.26 16 7 N -0.71 -19.56 4.06 -446.08 -1.81 -21.37 16 8 C 0.53 20.22 7.27 87.66 0.64 20.86 16 9 O -0.57 -27.28 15.70 -3.03 -0.05 -27.33 16 10 C -0.07 -2.62 5.18 29.10 0.15 -2.47 16 11 C -0.19 -9.19 4.43 -19.41 -0.09 -9.28 16 12 C -0.09 -4.39 9.66 22.22 0.21 -4.17 16 13 C -0.25 -11.58 10.05 22.46 0.23 -11.35 16 14 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 15 C -0.19 -10.72 8.69 22.73 0.20 -10.52 16 16 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 17 C -0.48 -25.24 8.14 23.46 0.19 -25.05 16 18 H 0.08 3.85 6.67 -2.91 -0.02 3.83 16 19 C 0.04 1.78 5.16 85.26 0.44 2.22 16 20 N -0.83 -43.33 10.96 21.83 0.24 -43.09 16 21 Si 0.97 37.64 29.59 68.60 2.03 39.66 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 24 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 25 C 0.45 12.74 7.29 71.23 0.52 13.25 16 26 O -0.53 -18.26 16.07 21.97 0.35 -17.91 16 27 O -0.36 -8.34 10.37 -51.41 -0.53 -8.87 16 28 C 0.03 0.49 10.56 113.37 1.20 1.69 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.12 7.75 -2.38 -0.02 1.10 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 1.74 8.00 -2.39 -0.02 1.72 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.42 8.70 8.60 -92.71 -0.80 7.90 16 37 H 0.11 3.89 7.08 -2.39 -0.02 3.87 16 38 H 0.11 3.46 8.05 -2.38 -0.02 3.44 16 39 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 40 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.10 5.69 6.21 -2.91 -0.02 5.67 16 43 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 44 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 46 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 Total: -1.00 -74.20 392.70 4.56 -69.64 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: 0.20 Total: 38.36 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 5.72 Total: -19.50 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -1.57 Total: -64.46 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -1.82 Total: -63.71 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.66 kcal Total: -74.20 4.56 -69.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812395320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.338 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds