Wall clock time and date at job start Tue Mar 31 2020 19:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99690 * 2 1 4 4 C 1.50701 * 109.46895 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00106 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00041 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00085 * 359.73665 * 6 5 4 8 8 C 1.38211 * 119.99784 * 0.52159 * 7 6 5 9 9 C 1.38214 * 120.00231 * 179.97438 * 4 3 2 10 10 C 1.50703 * 119.99514 * 0.02562 * 9 4 3 11 11 N 1.46498 * 109.47162 * 80.02192 * 10 9 4 12 12 C 1.34781 * 119.99435 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00249 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99567 * 179.97438 * 12 11 10 15 15 O 1.45196 * 109.47220 * 180.02562 * 14 12 11 16 16 C 1.34234 * 117.00273 * 180.02562 * 15 14 12 17 17 O 1.20823 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99968 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.47208 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47189 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00183 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99887 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99812 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00092 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47170 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47494 * 120.00024 * 24 22 20 27 27 H 1.48497 * 109.47307 * 240.00493 * 24 22 20 28 28 H 1.08994 * 109.47776 * 60.00212 * 1 2 3 29 29 H 1.09008 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47400 * 300.00183 * 1 2 3 31 31 H 1.08995 * 109.47278 * 60.00160 * 3 2 1 32 32 H 1.08998 * 109.47159 * 300.00057 * 3 2 1 33 33 H 1.08001 * 119.99581 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.99477 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.99823 * 180.27809 * 7 6 5 36 36 H 1.08002 * 120.00200 * 179.76459 * 8 7 6 37 37 H 1.09005 * 109.46415 * 200.01930 * 10 9 4 38 38 H 1.08994 * 109.47113 * 320.01514 * 10 9 4 39 39 H 0.96993 * 120.00172 * 359.97438 * 11 10 9 40 40 H 1.08994 * 109.47411 * 300.00394 * 14 12 11 41 41 H 1.09005 * 109.46958 * 60.00466 * 14 12 11 42 42 H 1.09006 * 109.46730 * 299.99924 * 18 16 15 43 43 H 1.08996 * 109.47180 * 59.99490 * 18 16 15 44 44 H 1.09002 * 109.46378 * 299.99841 * 19 18 16 45 45 H 1.08996 * 109.46943 * 59.99376 * 19 18 16 46 46 H 0.97003 * 119.99961 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.1071 -0.0617 -0.0016 6 6 5.4849 -0.1708 -0.0028 7 6 6.2685 0.9682 -0.0084 8 6 5.6741 2.2160 -0.0020 9 6 4.2959 2.3251 -0.0013 10 6 3.6477 3.6857 -0.0008 11 7 3.2227 4.0236 1.3599 12 6 2.6149 5.2018 1.6029 13 8 2.4194 5.9819 0.6951 14 6 2.1772 5.5492 3.0024 15 8 1.5528 6.8600 3.0029 16 6 1.1046 7.3212 4.1812 17 8 1.2303 6.6518 5.1792 18 6 0.4446 8.6737 4.2592 19 6 0.0304 8.9565 5.7047 20 6 -0.6290 10.3093 5.7828 21 1 -0.7410 10.9077 4.8908 22 6 -1.0893 10.7830 6.9931 23 7 -0.9533 10.0539 8.0792 24 14 -1.9073 12.4595 7.0899 25 1 -1.9378 13.0742 5.7383 26 1 -3.2950 12.3048 7.5953 27 1 -1.1387 13.3327 8.0129 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.4949 -0.9514 -0.0016 34 1 5.9493 -1.1459 -0.0040 35 1 7.3451 0.8829 -0.0138 36 1 6.2862 3.1058 -0.0025 37 1 4.3629 4.4289 -0.3532 38 1 2.7801 3.6750 -0.6604 39 1 3.3787 3.3995 2.0858 40 1 1.4616 4.8062 3.3543 41 1 3.0447 5.5593 3.6624 42 1 1.1451 9.4395 3.9259 43 1 -0.4375 8.6850 3.6191 44 1 -0.6699 8.1907 6.0382 45 1 0.9128 8.9453 6.3443 46 1 -1.2768 10.3873 8.9308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:10 Heat of formation + Delta-G solvation = -151.791895 kcal Electronic energy + Delta-G solvation = -27327.873104 eV Core-core repulsion = 23182.544428 eV Total energy + Delta-G solvation = -4145.328676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63316 -40.12565 -39.23246 -38.01043 -36.16089 -35.29870 -33.60343 -32.55852 -31.88584 -31.20719 -29.20213 -27.80219 -26.38150 -25.89680 -25.46025 -22.41123 -22.23131 -21.31917 -20.91235 -19.88600 -17.85312 -17.52326 -17.09911 -16.90514 -16.61723 -16.55569 -16.32050 -15.91622 -15.58384 -15.45960 -15.02935 -14.91585 -14.70082 -14.45968 -13.78816 -13.72405 -13.62499 -13.31211 -13.02445 -12.87761 -12.56806 -12.43157 -12.26223 -12.20446 -11.99924 -11.45363 -11.30361 -11.22788 -10.98162 -10.63243 -10.58733 -10.35469 -10.19530 -10.06515 -9.99196 -9.60090 -9.48556 -9.28208 -9.17391 -9.10814 -8.38845 -6.02598 -4.07202 0.72120 0.93236 2.33085 2.38808 2.73854 3.19571 3.22487 3.30861 3.38205 3.42133 3.54087 4.12967 4.29558 4.44096 4.46615 4.49496 4.62060 4.75716 4.81875 4.85366 4.98191 4.99826 5.00324 5.01405 5.09296 5.22052 5.24342 5.31499 5.33131 5.46064 5.50152 5.60721 5.93571 5.97457 6.06717 6.09541 6.11759 6.19104 6.50288 6.54158 6.65570 6.85328 7.07766 7.65481 7.71393 7.88592 7.96731 8.19495 8.36396 9.00052 9.57018 11.08475 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.001739 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.856029 B =16096.409778 C =16704.843284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.098 3.902 4 C -0.071 4.071 5 C -0.099 4.099 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.097 4.097 9 C -0.106 4.106 10 C 0.161 3.839 11 N -0.728 5.728 12 C 0.517 3.483 13 O -0.512 6.512 14 C 0.045 3.955 15 O -0.342 6.342 16 C 0.459 3.541 17 O -0.505 6.505 18 C -0.102 4.102 19 C 0.033 3.967 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.404 0.596 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.942 -23.735 -19.073 32.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.022 3.978 4 C -0.071 4.071 5 C -0.117 4.117 6 C -0.130 4.130 7 C -0.140 4.140 8 C -0.116 4.116 9 C -0.107 4.107 10 C 0.039 3.961 11 N -0.384 5.384 12 C 0.303 3.697 13 O -0.386 6.386 14 C -0.033 4.033 15 O -0.259 6.259 16 C 0.302 3.698 17 O -0.392 6.392 18 C -0.139 4.139 19 C -0.004 4.004 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.238 0.762 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.900 -23.519 -19.262 32.646 hybrid contribution -0.445 0.542 0.611 0.930 sum 11.455 -22.977 -18.651 31.733 Atomic orbital electron populations 1.22789 0.80237 1.03102 1.00471 1.87815 1.20215 1.27181 1.95553 1.21311 0.90027 0.85212 1.01256 1.19567 0.93953 0.93348 1.00250 1.21034 0.94551 0.97529 0.98565 1.21275 0.93828 0.98784 0.99127 1.21204 1.00133 0.92413 1.00245 1.21060 0.93518 0.98080 0.98902 1.19557 0.93770 0.93593 1.03780 1.20178 0.99509 0.92566 0.83876 1.45914 1.62048 1.19638 1.10765 1.20251 0.77723 0.81355 0.90417 1.90762 1.53430 1.48509 1.45893 1.22504 0.99959 0.86142 0.94661 1.86666 1.70015 1.32478 1.36734 1.24961 0.75088 0.89899 0.79809 1.90639 1.53400 1.58644 1.36484 1.21802 1.00060 0.87388 1.04679 1.19039 0.97508 0.97013 0.86873 1.21199 1.38869 1.02181 0.94334 0.92166 1.25025 0.96000 0.97630 0.95726 1.70003 1.46466 1.37293 0.99078 0.86474 0.79086 0.83904 0.78151 1.19616 1.20974 1.20975 0.93779 0.89286 0.93645 0.91548 0.91602 0.84788 0.85770 0.85724 0.85453 0.90095 0.90389 0.76172 0.88415 0.88299 0.88684 0.88698 0.95545 0.95538 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.15 9.18 -35.23 -0.32 -3.47 16 3 C 0.10 0.73 5.17 36.01 0.19 0.91 16 4 C -0.07 -0.54 5.88 -104.62 -0.62 -1.15 16 5 C -0.10 -0.73 9.38 -39.58 -0.37 -1.10 16 6 C -0.11 -0.71 10.05 -39.58 -0.40 -1.10 16 7 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 8 C -0.10 -0.63 9.67 -39.58 -0.38 -1.01 16 9 C -0.11 -0.76 5.25 -104.62 -0.55 -1.31 16 10 C 0.16 1.27 5.21 -5.19 -0.03 1.24 16 11 N -0.73 -6.07 5.36 -61.47 -0.33 -6.40 16 12 C 0.52 6.29 7.91 -10.99 -0.09 6.20 16 13 O -0.51 -8.36 16.50 -14.10 -0.23 -8.59 16 14 C 0.05 0.58 5.94 36.00 0.21 0.79 16 15 O -0.34 -5.89 9.75 -45.92 -0.45 -6.34 16 16 C 0.46 9.00 7.96 36.01 0.29 9.28 16 17 O -0.51 -11.07 15.73 -18.75 -0.29 -11.37 16 18 C -0.10 -2.10 5.75 -27.88 -0.16 -2.26 16 19 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 20 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 24 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.47 7.94 -51.93 -0.41 0.06 16 32 H 0.07 0.46 7.55 -51.93 -0.39 0.07 16 33 H 0.13 0.98 7.01 -52.49 -0.37 0.61 16 34 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 35 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.67 8.04 -52.49 -0.42 0.24 16 37 H 0.08 0.66 8.00 -51.93 -0.42 0.24 16 38 H 0.08 0.64 7.06 -51.93 -0.37 0.28 16 39 H 0.40 2.52 8.46 -40.82 -0.35 2.18 16 40 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 41 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 42 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -35.50 398.13 -8.54 -44.04 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.91 Total: -2.01 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.72 Total: -2.13 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.41 Total: -32.60 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.30 Total: -29.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.50 -8.54 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.750 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds