Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00115 * 180.02562 * 12 11 10 15 15 O 1.45202 * 109.46768 * 180.02562 * 14 12 11 16 16 C 1.34231 * 116.99715 * 179.97438 * 15 14 12 17 17 O 1.20830 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47332 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.47248 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99956 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00024 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99964 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 119.99890 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47627 * 89.99722 * 24 22 20 26 26 H 1.48499 * 109.47168 * 209.99896 * 24 22 20 27 27 H 1.48505 * 109.47409 * 329.99788 * 24 22 20 28 28 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 30 30 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 31 31 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 33 33 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 36 36 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 37 37 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 38 38 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 39 39 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 40 40 H 1.09002 * 109.46793 * 299.99519 * 14 12 11 41 41 H 1.08992 * 109.46831 * 59.99969 * 14 12 11 42 42 H 1.08998 * 109.47456 * 300.00823 * 18 16 15 43 43 H 1.09004 * 109.46319 * 60.00516 * 18 16 15 44 44 H 1.09008 * 109.46580 * 300.00462 * 19 18 16 45 45 H 1.08992 * 109.46932 * 60.00198 * 19 18 16 46 46 H 0.97001 * 120.00203 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 6 5.5005 -2.3277 -2.5982 13 8 5.0893 -1.8721 -3.6443 14 6 6.3232 -3.5904 -2.5979 15 8 6.4834 -4.0639 -3.9611 16 6 7.1970 -5.1874 -4.1360 17 8 7.6714 -5.7564 -3.1815 18 6 7.4052 -5.7395 -5.5226 19 6 8.2455 -7.0156 -5.4426 20 6 8.4543 -7.5674 -6.8293 21 1 8.0304 -7.0586 -7.6824 22 6 9.1873 -8.7213 -7.0089 23 7 9.3691 -9.2031 -8.2190 24 14 9.9209 -9.6010 -5.5334 25 1 8.9475 -10.5957 -5.0157 26 1 11.1687 -10.2954 -5.9411 27 1 10.2300 -8.6113 -4.4703 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2128 2.3203 0.0097 32 1 1.3339 4.5113 -0.0024 33 1 3.7922 4.6381 -0.0116 34 1 5.1344 2.5752 -0.0097 35 1 5.2341 0.2273 0.4302 36 1 3.7489 -0.7402 0.5934 37 1 3.4412 -0.6828 -1.8664 38 1 4.9262 0.2847 -2.0297 39 1 5.5508 -2.0689 -0.5993 40 1 7.3033 -3.3853 -2.1673 41 1 5.8181 -4.3529 -2.0050 42 1 6.4388 -5.9688 -5.9714 43 1 7.9235 -5.0006 -6.1338 44 1 9.2120 -6.7866 -4.9936 45 1 7.7269 -7.7543 -4.8315 46 1 9.8844 -10.0151 -8.3454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = -145.001213 kcal Electronic energy + Delta-G solvation = -26950.965643 eV Core-core repulsion = 22805.931434 eV Total energy + Delta-G solvation = -4145.034210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.79810 -40.37927 -39.42202 -37.92428 -36.31057 -35.66991 -33.61905 -33.21555 -31.46357 -30.64276 -29.92423 -28.27526 -27.57982 -26.18720 -23.94219 -22.61875 -21.92338 -21.65322 -20.77702 -19.83947 -18.48136 -17.72544 -17.32523 -16.89268 -16.74836 -16.64505 -16.39786 -16.11639 -15.77386 -15.48458 -15.13263 -14.89892 -14.53419 -14.14862 -14.01040 -13.76424 -13.52373 -13.36439 -13.24194 -12.74340 -12.49307 -12.43848 -12.36690 -12.26926 -12.12707 -11.63263 -11.51714 -11.45958 -11.31315 -11.01807 -10.64103 -10.32944 -10.19280 -10.09157 -9.90537 -9.70730 -9.38576 -9.35008 -9.24423 -8.63048 -8.54474 -6.05619 -4.05488 0.80020 0.95822 2.35400 2.39360 2.64011 2.79291 3.23940 3.34887 3.40796 3.42407 3.50489 4.22776 4.28882 4.43173 4.47170 4.52835 4.60586 4.67073 4.70821 4.72288 4.85270 4.95136 4.97396 5.00139 5.03234 5.07591 5.23492 5.28926 5.35842 5.44306 5.54745 5.68881 5.84436 5.96516 6.02295 6.03400 6.05316 6.09695 6.28597 6.44004 6.72190 6.88964 7.14771 7.24237 7.31783 7.71705 7.95915 8.14993 8.48615 8.97222 9.55875 11.06999 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.001533 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.989041 B =18262.347685 C =18420.319086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.133 3.867 4 C -0.208 4.208 5 C -0.081 4.081 6 C -0.156 4.156 7 C -0.075 4.075 8 C -0.115 4.115 9 C -0.082 4.082 10 C 0.129 3.871 11 N -0.731 5.731 12 C 0.516 3.484 13 O -0.513 6.513 14 C 0.045 3.955 15 O -0.339 6.339 16 C 0.460 3.540 17 O -0.512 6.512 18 C -0.094 4.094 19 C -0.002 4.002 20 C -0.527 4.527 21 H 0.076 0.924 22 C 0.071 3.929 23 N -0.900 5.900 24 Si 0.877 3.123 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.262 1.262 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.402 0.598 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.128 26.771 23.296 39.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.088 3.912 4 C -0.227 4.227 5 C -0.099 4.099 6 C -0.174 4.174 7 C -0.093 4.093 8 C -0.116 4.116 9 C -0.120 4.120 10 C 0.006 3.994 11 N -0.386 5.386 12 C 0.301 3.699 13 O -0.387 6.387 14 C -0.032 4.032 15 O -0.255 6.255 16 C 0.304 3.696 17 O -0.399 6.399 18 C -0.132 4.132 19 C -0.039 4.039 20 C -0.565 4.565 21 H 0.094 0.906 22 C -0.131 4.131 23 N -0.538 5.538 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.186 1.186 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.135 26.597 22.706 38.943 hybrid contribution 0.234 -0.508 1.318 1.432 sum -16.901 26.089 24.024 39.286 Atomic orbital electron populations 1.23092 0.78167 1.04248 1.01339 1.86093 1.21486 1.26608 1.88376 1.18876 0.91772 0.84420 0.96133 1.21253 1.00137 0.92378 1.08909 1.20975 0.94771 0.97011 0.97175 1.21075 0.93929 0.98514 1.03905 1.20951 1.00085 0.90980 0.97289 1.18985 0.90349 0.95369 1.06901 1.20585 0.99766 0.95045 0.96557 1.21306 0.96011 0.85637 0.96463 1.45814 1.55991 1.27798 1.08958 1.20190 0.80680 0.85094 0.83968 1.90767 1.51157 1.65633 1.31133 1.22538 1.01259 0.94897 0.84537 1.86663 1.67965 1.42294 1.28617 1.24907 0.73591 0.76820 0.94263 1.90620 1.47137 1.58760 1.43407 1.21571 1.03993 1.00118 0.87502 1.19494 0.95095 0.90996 0.98338 1.21039 1.34045 1.09736 0.91697 0.90576 1.24951 0.95577 0.96845 0.95717 1.69902 1.40688 1.22236 1.21009 0.86800 0.78899 0.80239 0.83622 1.20194 1.21326 1.18609 0.88018 0.92658 0.92501 0.85399 0.85768 0.85727 0.85152 0.90207 0.89773 0.90979 0.91263 0.76369 0.88351 0.88344 0.88072 0.88042 0.95569 0.96012 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.45 9.64 -19.42 -0.19 -2.64 16 3 C 0.13 1.05 6.66 -39.22 -0.26 0.79 16 4 C -0.21 -1.37 9.04 -39.43 -0.36 -1.73 16 5 C -0.08 -0.48 10.04 -39.60 -0.40 -0.88 16 6 C -0.16 -0.93 10.04 -39.56 -0.40 -1.33 16 7 C -0.07 -0.48 9.68 -39.61 -0.38 -0.86 16 8 C -0.11 -0.85 5.15 -104.47 -0.54 -1.38 16 9 C -0.08 -0.52 5.18 -27.88 -0.14 -0.66 16 10 C 0.13 1.11 5.66 -4.04 -0.02 1.09 16 11 N -0.73 -6.31 5.56 -60.29 -0.33 -6.64 16 12 C 0.52 6.58 7.91 -10.98 -0.09 6.49 16 13 O -0.51 -8.91 16.50 -14.11 -0.23 -9.14 16 14 C 0.05 0.58 5.94 36.01 0.21 0.79 16 15 O -0.34 -5.79 9.76 -45.91 -0.45 -6.23 16 16 C 0.46 8.70 7.96 36.00 0.29 8.99 16 17 O -0.51 -10.62 15.73 -18.75 -0.30 -10.91 16 18 C -0.09 -1.89 5.75 -27.88 -0.16 -2.05 16 19 C 0.00 -0.04 3.33 -27.88 -0.09 -0.14 16 20 C -0.53 -15.01 9.66 -34.44 -0.33 -15.35 16 21 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 24 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.18 7.65 -51.93 -0.40 -0.21 16 30 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 31 H 0.13 0.61 6.30 -52.49 -0.33 0.27 16 32 H 0.12 0.48 8.06 -52.49 -0.42 0.05 16 33 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 34 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 35 H 0.08 0.37 8.05 -51.93 -0.42 -0.05 16 36 H 0.08 0.53 7.70 -51.93 -0.40 0.13 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 2.15 8.47 -40.82 -0.35 1.80 16 40 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 41 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 42 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 43 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 44 H 0.03 0.66 7.16 -51.92 -0.37 0.29 16 45 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -37.04 394.62 -8.09 -45.13 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.87 Total: -2.93 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.78 Total: -3.13 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.44 Total: -33.61 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.16 Total: -28.92 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.04 -8.09 -45.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.871 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds