Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00115 * 180.02562 * 12 11 10 15 15 O 1.45202 * 109.46768 * 180.02562 * 14 12 11 16 16 C 1.34231 * 116.99715 * 179.97438 * 15 14 12 17 17 O 1.20830 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47332 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.47248 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99956 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00024 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99964 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 119.99890 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47627 * 89.99722 * 24 22 20 26 26 H 1.48499 * 109.47168 * 209.99896 * 24 22 20 27 27 H 1.48505 * 109.47409 * 329.99788 * 24 22 20 28 28 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 30 30 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 31 31 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 33 33 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 36 36 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 37 37 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 38 38 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 39 39 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 40 40 H 1.09002 * 109.46793 * 299.99519 * 14 12 11 41 41 H 1.08992 * 109.46831 * 59.99969 * 14 12 11 42 42 H 1.08998 * 109.47456 * 300.00823 * 18 16 15 43 43 H 1.09004 * 109.46319 * 60.00516 * 18 16 15 44 44 H 1.09008 * 109.46580 * 300.00462 * 19 18 16 45 45 H 1.08992 * 109.46932 * 60.00198 * 19 18 16 46 46 H 0.97001 * 120.00203 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 6 5.5005 -2.3277 -2.5982 13 8 5.0893 -1.8721 -3.6443 14 6 6.3232 -3.5904 -2.5979 15 8 6.4834 -4.0639 -3.9611 16 6 7.1970 -5.1874 -4.1360 17 8 7.6714 -5.7564 -3.1815 18 6 7.4052 -5.7395 -5.5226 19 6 8.2455 -7.0156 -5.4426 20 6 8.4543 -7.5674 -6.8293 21 1 8.0304 -7.0586 -7.6824 22 6 9.1873 -8.7213 -7.0089 23 7 9.3691 -9.2031 -8.2190 24 14 9.9209 -9.6010 -5.5334 25 1 8.9475 -10.5957 -5.0157 26 1 11.1687 -10.2954 -5.9411 27 1 10.2300 -8.6113 -4.4703 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2128 2.3203 0.0097 32 1 1.3339 4.5113 -0.0024 33 1 3.7922 4.6381 -0.0116 34 1 5.1344 2.5752 -0.0097 35 1 5.2341 0.2273 0.4302 36 1 3.7489 -0.7402 0.5934 37 1 3.4412 -0.6828 -1.8664 38 1 4.9262 0.2847 -2.0297 39 1 5.5508 -2.0689 -0.5993 40 1 7.3033 -3.3853 -2.1673 41 1 5.8181 -4.3529 -2.0050 42 1 6.4388 -5.9688 -5.9714 43 1 7.9235 -5.0006 -6.1338 44 1 9.2120 -6.7866 -4.9936 45 1 7.7269 -7.7543 -4.8315 46 1 9.8844 -10.0151 -8.3454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = -168.593977 kcal Electronic energy + Delta-G solvation = -26951.988702 eV Core-core repulsion = 22805.931434 eV Total energy + Delta-G solvation = -4146.057269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73651 -41.24634 -40.53267 -38.39307 -37.64638 -36.54385 -35.62719 -33.88619 -33.45155 -31.12747 -30.79731 -29.14967 -28.17224 -27.77857 -24.68254 -23.64337 -23.05879 -22.23259 -21.70088 -21.46580 -19.41880 -18.95132 -18.49338 -18.31605 -17.95101 -17.35063 -17.26416 -16.72656 -16.53123 -16.47149 -16.25832 -16.18056 -15.47753 -15.32753 -14.91944 -14.86020 -14.71226 -14.41799 -14.02435 -13.86762 -13.79903 -13.74301 -13.29632 -12.91683 -12.85712 -12.84321 -12.66781 -12.24824 -12.09950 -12.02344 -11.99452 -11.88402 -11.77694 -11.75501 -11.54529 -11.41355 -11.06998 -10.77522 -10.24276 -9.82221 -9.10917 -8.30232 -6.35139 0.33408 0.48838 1.15142 1.24603 1.36863 1.38632 1.39938 1.52335 2.31406 2.36415 2.38435 2.80265 3.05107 3.53308 3.80767 3.85499 3.88625 4.03342 4.05381 4.08304 4.12721 4.18933 4.29178 4.33578 4.36595 4.38708 4.44337 4.49781 4.57756 4.71205 4.74329 4.82584 4.89167 4.98319 5.16291 5.19157 5.28027 5.31803 5.37537 5.40561 5.51715 5.59207 5.60906 5.86762 6.22478 6.35895 6.44146 6.67553 6.76153 7.07268 7.29900 8.85495 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.001533 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.989041 B =18262.347685 C =18420.319086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.114 3.886 4 C -0.219 4.219 5 C -0.088 4.088 6 C -0.164 4.164 7 C -0.082 4.082 8 C -0.133 4.133 9 C -0.070 4.070 10 C 0.134 3.866 11 N -0.707 5.707 12 C 0.518 3.482 13 O -0.567 6.567 14 C 0.040 3.960 15 O -0.348 6.348 16 C 0.474 3.526 17 O -0.531 6.531 18 C -0.093 4.093 19 C 0.004 3.996 20 C -0.535 4.535 21 H 0.047 0.953 22 C 0.013 3.987 23 N -0.944 5.944 24 Si 0.943 3.057 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.254 1.254 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.422 0.578 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 27.692 26.000 41.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.068 3.932 4 C -0.237 4.237 5 C -0.106 4.106 6 C -0.182 4.182 7 C -0.100 4.100 8 C -0.135 4.135 9 C -0.107 4.107 10 C 0.010 3.990 11 N -0.362 5.362 12 C 0.304 3.696 13 O -0.445 6.445 14 C -0.037 4.037 15 O -0.264 6.264 16 C 0.319 3.681 17 O -0.420 6.420 18 C -0.131 4.131 19 C -0.034 4.034 20 C -0.573 4.573 21 H 0.066 0.934 22 C -0.185 4.185 23 N -0.584 5.584 24 Si 0.766 3.234 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.178 1.178 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.259 0.741 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.093 27.542 25.470 41.224 hybrid contribution 0.113 -0.662 0.475 0.822 sum -16.980 26.880 25.945 41.037 Atomic orbital electron populations 1.23281 0.76892 1.05220 1.02080 1.86051 1.22982 1.26990 1.88567 1.19155 0.92338 0.84814 0.96853 1.21504 1.00985 0.92385 1.08840 1.21304 0.95203 0.97573 0.96517 1.21394 0.94162 0.99292 1.03362 1.21230 1.01093 0.90813 0.96850 1.19206 0.90523 0.96078 1.07659 1.20501 1.00845 0.94713 0.94682 1.21266 0.94577 0.85129 0.98003 1.45645 1.54618 1.27195 1.08715 1.20278 0.80180 0.85021 0.84148 1.90754 1.53528 1.67081 1.33150 1.22912 1.02935 0.95298 0.82548 1.86597 1.67146 1.41204 1.31463 1.24302 0.73454 0.77108 0.93217 1.90611 1.48107 1.59511 1.43759 1.21356 1.03931 0.98680 0.89116 1.19327 0.95650 0.92849 0.95580 1.21356 1.33379 1.09641 0.92927 0.93425 1.25845 0.96199 0.97859 0.98565 1.70031 1.41965 1.23092 1.23292 0.85764 0.78382 0.79190 0.80014 1.19214 1.20532 1.17775 0.87003 0.91458 0.92192 0.84091 0.83803 0.83914 0.83514 0.88009 0.89671 0.93190 0.92121 0.74063 0.85926 0.86101 0.87089 0.87064 0.96000 0.96148 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.14 9.64 -92.42 -0.89 -6.04 16 3 C 0.11 1.74 6.66 22.51 0.15 1.89 16 4 C -0.22 -2.73 9.04 22.36 0.20 -2.52 16 5 C -0.09 -0.94 10.04 22.26 0.22 -0.71 16 6 C -0.16 -1.71 10.04 22.28 0.22 -1.49 16 7 C -0.08 -0.94 9.68 22.25 0.22 -0.72 16 8 C -0.13 -1.85 5.15 -19.77 -0.10 -1.95 16 9 C -0.07 -0.78 5.18 29.85 0.15 -0.62 16 10 C 0.13 2.21 5.66 86.38 0.49 2.70 16 11 N -0.71 -10.96 5.56 -463.06 -2.57 -13.54 16 12 C 0.52 12.56 7.91 87.66 0.69 13.25 16 13 O -0.57 -19.69 16.50 15.74 0.26 -19.43 16 14 C 0.04 0.92 5.94 71.24 0.42 1.34 16 15 O -0.35 -11.33 9.76 -45.07 -0.44 -11.77 16 16 C 0.47 17.14 7.96 71.23 0.57 17.71 16 17 O -0.53 -20.85 15.73 21.95 0.35 -20.50 16 18 C -0.09 -3.66 5.75 29.85 0.17 -3.49 16 19 C 0.00 0.17 3.33 29.85 0.10 0.27 16 20 C -0.54 -30.72 9.66 25.60 0.25 -30.48 16 21 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 22 C 0.01 0.77 5.47 84.66 0.46 1.23 16 23 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 24 Si 0.94 45.32 27.47 68.60 1.88 47.21 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 27 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 28 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.39 7.65 -2.39 -0.02 0.38 16 30 H 0.06 0.46 7.67 -2.38 -0.02 0.44 16 31 H 0.14 1.22 6.30 -2.91 -0.02 1.20 16 32 H 0.14 0.85 8.06 -2.91 -0.02 0.82 16 33 H 0.14 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.10 0.67 8.05 -2.39 -0.02 0.65 16 36 H 0.08 0.94 7.70 -2.39 -0.02 0.93 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.42 3.31 8.47 -92.71 -0.79 2.53 16 40 H 0.12 2.27 8.13 -2.39 -0.02 2.25 16 41 H 0.12 2.28 8.13 -2.39 -0.02 2.27 16 42 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 43 H 0.11 4.12 8.14 -2.38 -0.02 4.10 16 44 H 0.02 1.07 7.16 -2.38 -0.02 1.05 16 45 H 0.02 0.98 7.53 -2.39 -0.02 0.96 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -80.41 394.62 4.37 -76.04 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.15 Total: 8.98 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.33 Total: -2.31 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -2.27 Total: -72.17 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.73 Total: -57.74 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -80.41 4.37 -76.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.555 kcal (2) G-P(sol) polarization free energy of solvation -80.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds