Wall clock time and date at job start Tue Mar 31 2020 19:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00148 * 2 1 4 4 C 1.53000 * 109.47208 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47126 * 65.00090 * 4 3 2 6 6 C 1.46497 * 120.00186 * 285.34730 * 5 4 3 7 7 C 1.50702 * 109.46799 * 269.99801 * 6 5 4 8 8 H 1.07998 * 120.00279 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99860 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00194 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00067 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47206 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47417 * 119.99878 * 11 9 7 14 14 H 1.48502 * 109.47144 * 239.99955 * 11 9 7 15 15 C 1.34777 * 119.99869 * 105.33653 * 5 4 3 16 16 O 1.21557 * 120.00097 * 177.13197 * 15 5 4 17 17 C 1.47849 * 120.00253 * 357.42078 * 15 5 4 18 18 C 1.39576 * 120.13701 * 332.75005 * 17 15 5 19 19 C 1.37968 * 119.84552 * 179.74592 * 18 17 15 20 20 C 1.38353 * 120.14631 * 0.53734 * 19 18 17 21 21 C 1.50701 * 119.85260 * 179.71762 * 20 19 18 22 22 O 1.43748 * 109.62842 * 118.93000 * 21 20 19 23 23 C 1.44587 * 104.91744 * 215.70731 * 22 21 20 24 24 C 1.54912 * 101.63603 * 36.26901 * 23 22 21 25 25 O 1.43364 * 109.63136 * 359.71266 * 21 20 19 26 26 C 1.38361 * 120.29448 * 359.74037 * 20 19 18 27 27 C 1.37961 * 120.14356 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47178 * 299.99925 * 1 2 3 30 30 H 1.08997 * 109.47121 * 59.99867 * 1 2 3 31 31 H 1.09001 * 109.47370 * 60.00370 * 3 2 1 32 32 H 1.09003 * 109.47372 * 300.00384 * 3 2 1 33 33 H 1.09002 * 109.47635 * 305.00371 * 4 3 2 34 34 H 1.08996 * 109.47010 * 184.99941 * 4 3 2 35 35 H 1.09003 * 109.47165 * 29.99475 * 6 5 4 36 36 H 1.09001 * 109.47408 * 149.99580 * 6 5 4 37 37 H 0.97002 * 120.00125 * 179.97438 * 10 9 7 38 38 H 1.07997 * 120.08060 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.92375 * 180.27229 * 19 18 17 40 40 H 1.08998 * 109.62444 * 239.31738 * 21 20 19 41 41 H 1.09005 * 111.09139 * 278.16302 * 23 22 21 42 42 H 1.08998 * 110.98316 * 154.33141 * 23 22 21 43 43 H 1.09006 * 110.69775 * 205.95960 * 24 23 22 44 44 H 1.08998 * 110.84688 * 82.82483 * 24 23 22 45 45 H 1.07999 * 119.93060 * 180.02562 * 26 20 19 46 46 H 1.08001 * 120.07565 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 3.7902 -0.8739 -1.4611 7 6 5.0022 -1.6161 -0.9597 8 1 5.8288 -1.0712 -0.5282 9 6 5.0558 -2.9907 -1.0520 10 7 4.0490 -3.6542 -1.5771 11 14 6.5583 -3.9106 -0.4313 12 1 7.5442 -2.9407 0.1095 13 1 6.1529 -4.8547 0.6408 14 1 7.1728 -4.6679 -1.5512 15 6 4.5539 1.3157 -2.2091 16 8 4.9672 0.7926 -3.2255 17 6 4.6903 2.7759 -2.0211 18 6 3.7880 3.4653 -1.2095 19 6 3.9240 4.8270 -1.0341 20 6 4.9452 5.5108 -1.6695 21 6 5.0838 6.9992 -1.4784 22 8 6.3564 7.2925 -0.8777 23 6 6.1035 8.4115 0.0023 24 6 4.6861 8.0789 0.5314 25 8 4.0461 7.4719 -0.6093 26 6 5.8395 4.8343 -2.4800 27 6 5.7183 3.4717 -2.6592 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5684 0.8426 34 1 3.9784 2.1765 0.0902 35 1 2.9077 -1.2093 -0.9163 36 1 3.6574 -1.0714 -2.5248 37 1 4.0868 -4.6213 -1.6423 38 1 2.9879 2.9333 -0.7162 39 1 3.2292 5.3609 -0.4029 40 1 5.0100 7.5006 -2.4433 41 1 6.1035 9.3519 -0.5490 42 1 6.8275 8.4390 0.8167 43 1 4.1626 8.9878 0.8283 44 1 4.7375 7.3765 1.3633 45 1 6.6347 5.3739 -2.9729 46 1 6.4172 2.9447 -3.2918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826017515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:26 Heat of formation + Delta-G solvation = -102.628663 kcal Electronic energy + Delta-G solvation = -29428.948907 eV Core-core repulsion = 25285.752109 eV Total energy + Delta-G solvation = -4143.196798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94851 -39.95814 -37.95538 -37.40198 -35.42702 -34.97898 -32.94429 -32.07181 -31.00860 -29.75400 -29.47301 -27.25204 -26.02471 -25.38010 -23.77996 -22.97871 -22.74436 -22.46446 -21.32387 -19.04893 -17.83564 -17.46898 -16.95808 -16.58780 -16.41099 -16.19090 -15.58102 -15.37882 -15.34899 -14.81459 -14.65662 -14.54358 -14.23782 -13.94570 -13.88851 -13.62457 -13.30482 -13.11996 -12.90034 -12.70228 -12.43677 -12.02085 -11.91906 -11.76043 -11.66394 -11.43669 -11.23895 -10.88820 -10.84888 -10.70835 -10.64350 -10.33749 -10.08129 -10.05999 -9.51700 -9.35510 -9.01089 -8.86370 -8.68443 -8.29236 -7.58683 -5.91673 -3.94597 0.95694 1.41397 2.99264 3.31610 3.37114 3.44063 3.48516 3.59571 3.86509 4.05587 4.11535 4.14716 4.42486 4.54531 4.57200 4.71256 4.82780 4.94588 5.01009 5.03252 5.05889 5.23295 5.28761 5.40146 5.41309 5.43547 5.44622 5.48214 5.58048 5.60368 5.63436 5.67424 5.83211 5.94248 6.05933 6.27134 6.33018 6.37158 6.49151 6.70765 6.89723 7.34062 7.44962 7.59028 7.71044 8.06540 8.38286 8.48686 8.98081 9.14209 9.68303 11.16581 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003089 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.096290 B = 9063.256386 C =10146.789534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.039 3.961 4 C 0.084 3.916 5 N -0.579 5.579 6 C 0.243 3.757 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.539 3.461 16 O -0.533 6.533 17 C -0.105 4.105 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.107 4.107 21 C 0.278 3.722 22 O -0.369 6.369 23 C 0.016 3.984 24 C 0.019 3.981 25 O -0.378 6.378 26 C -0.100 4.100 27 C -0.070 4.070 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.260 0.740 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 25.432 6.010 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.039 4.039 4 C -0.040 4.040 5 N -0.309 5.309 6 C 0.124 3.876 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.326 3.674 16 O -0.411 6.411 17 C -0.109 4.109 18 C -0.141 4.141 19 C -0.117 4.117 20 C -0.108 4.108 21 C 0.183 3.817 22 O -0.289 6.289 23 C -0.061 4.061 24 C -0.057 4.057 25 O -0.299 6.299 26 C -0.118 4.118 27 C -0.089 4.089 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.146 0.854 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.872 24.609 5.354 25.348 hybrid contribution 0.618 -0.217 0.479 0.811 sum -2.254 24.391 5.832 25.180 Atomic orbital electron populations 1.22727 0.82127 1.02762 0.99054 1.88189 1.18703 1.26132 1.95059 1.23115 0.95067 0.86072 0.99630 1.22239 0.91743 1.00398 0.89637 1.48125 1.57053 1.11420 1.14315 1.19518 0.97727 0.71833 0.98481 1.21488 1.03016 0.91618 1.39934 0.92639 1.24896 0.96293 0.97435 0.95457 1.69956 1.30725 1.07563 1.45100 0.86490 0.83060 0.79714 0.78411 1.19897 1.21063 1.21007 1.18246 0.79378 0.85481 0.84336 1.90756 1.48375 1.73424 1.28545 1.20431 0.97098 0.94863 0.98486 1.22216 0.99984 0.94396 0.97538 1.20904 0.98042 0.93480 0.99226 1.20054 0.97380 0.94014 0.99363 1.22686 0.74887 0.91384 0.92734 1.89287 1.29024 1.50042 1.60591 1.24377 0.97153 0.90522 0.94030 1.24228 0.92696 0.98881 0.89886 1.88886 1.30510 1.77512 1.32979 1.20816 0.98485 0.94099 0.98378 1.21243 0.96958 0.93451 0.97263 0.89616 0.94721 0.94540 0.92775 0.93188 0.89483 0.87658 0.92047 0.94424 0.92986 0.83222 0.84888 0.88524 0.90480 0.87186 0.88075 0.90317 0.85404 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.51 8.29 -35.23 -0.29 -6.80 16 3 C 0.04 0.58 5.13 37.16 0.19 0.77 16 4 C 0.08 1.44 5.39 -4.04 -0.02 1.42 16 5 N -0.58 -12.95 2.50 -176.17 -0.44 -13.39 16 6 C 0.24 6.64 4.99 -5.19 -0.03 6.61 16 7 C -0.52 -15.42 9.39 -34.44 -0.32 -15.74 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.42 13.29 55.43 0.74 -26.69 16 11 Si 0.90 22.62 29.54 -169.99 -5.02 17.60 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.54 12.07 7.48 -12.33 -0.09 11.98 16 16 O -0.53 -14.18 16.25 5.32 0.09 -14.09 16 17 C -0.11 -1.84 5.52 -104.97 -0.58 -2.42 16 18 C -0.12 -1.74 7.44 -39.18 -0.29 -2.03 16 19 C -0.10 -1.22 9.37 -39.64 -0.37 -1.59 16 20 C -0.11 -1.32 5.57 -104.53 -0.58 -1.90 16 21 C 0.28 2.81 4.31 36.01 0.16 2.97 16 22 O -0.37 -3.74 11.22 -59.05 -0.66 -4.40 16 23 C 0.02 0.09 7.95 38.17 0.30 0.40 16 24 C 0.02 0.12 8.07 38.17 0.31 0.43 16 25 O -0.38 -3.60 9.69 -59.05 -0.57 -4.17 16 26 C -0.10 -1.29 9.61 -39.64 -0.38 -1.67 16 27 C -0.07 -1.11 9.59 -39.18 -0.38 -1.48 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.71 7.04 -51.93 -0.37 0.34 16 33 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.11 1.53 4.18 -51.93 -0.22 1.32 16 35 H 0.06 1.72 5.80 -51.93 -0.30 1.41 16 36 H 0.04 1.16 7.46 -51.93 -0.39 0.78 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.15 1.94 2.72 -52.49 -0.14 1.80 16 39 H 0.13 1.41 6.99 -52.49 -0.37 1.04 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.14 2.19 7.88 -52.49 -0.41 1.78 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -36.86 376.02 -7.96 -44.82 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.39 Total: 0.50 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.07 Total: 0.95 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.30 Total: -40.07 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.44 Total: -29.47 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.86 -7.96 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826017515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.811 kcal (2) G-P(sol) polarization free energy of solvation -36.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds