Wall clock time and date at job start Tue Mar 31 2020 19:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34225 * 116.99995 * 2 1 4 4 O 1.20833 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00340 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.53530 * 300.09998 * 5 3 2 7 7 C 1.53120 * 109.49854 * 60.19602 * 5 3 2 8 8 C 1.53097 * 109.15361 * 177.59789 * 7 5 3 9 9 H 1.08998 * 109.49209 * 182.39602 * 8 7 5 10 10 O 1.42898 * 109.50858 * 62.28260 * 8 7 5 11 11 C 1.53044 * 109.28919 * 302.33727 * 8 7 5 12 12 N 1.46846 * 109.51640 * 59.18381 * 11 8 7 13 13 C 1.46897 * 111.00352 * 174.16672 * 12 11 8 14 14 C 1.50698 * 109.47005 * 293.95369 * 13 12 11 15 15 C 1.38298 * 119.93302 * 269.72719 * 14 13 12 16 16 C 1.38104 * 120.07113 * 179.72765 * 15 14 13 17 17 C 1.38874 * 119.92657 * 0.54092 * 16 15 14 18 18 O 1.35759 * 120.06855 * 179.74869 * 17 16 15 19 19 C 1.34820 * 117.00077 * 174.44632 * 18 17 16 20 20 H 1.08005 * 120.00315 * 5.05842 * 19 18 17 21 21 C 1.38652 * 120.00270 * 185.05920 * 19 18 17 22 22 N 1.31564 * 119.99805 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47131 * 60.00081 * 23 21 19 25 25 H 1.48502 * 109.46731 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47381 * 299.99433 * 23 21 19 27 27 C 1.38878 * 119.86487 * 359.73031 * 17 16 15 28 28 C 1.38100 * 119.93153 * 0.02562 * 27 17 16 29 29 C 1.46845 * 111.19806 * 298.26728 * 12 11 8 30 30 H 1.08994 * 109.46939 * 300.00084 * 1 2 3 31 31 H 1.08993 * 109.46985 * 60.00824 * 1 2 3 32 32 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.52642 * 297.49921 * 7 5 3 34 34 H 1.08995 * 109.52817 * 57.63160 * 7 5 3 35 35 H 0.96699 * 114.00605 * 180.17794 * 10 8 7 36 36 H 1.08998 * 109.46206 * 299.17593 * 11 8 7 37 37 H 1.08998 * 109.46322 * 179.19036 * 11 8 7 38 38 H 1.08996 * 109.46594 * 53.95411 * 13 12 11 39 39 H 1.08998 * 109.46962 * 173.95525 * 13 12 11 40 40 H 1.08004 * 119.96303 * 359.97438 * 15 14 13 41 41 H 1.07994 * 120.03418 * 180.27056 * 16 15 14 42 42 H 0.97000 * 119.99932 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.03398 * 179.97438 * 27 17 16 44 44 H 1.08000 * 119.96540 * 180.02562 * 28 27 17 45 45 H 1.09000 * 109.46624 * 181.75551 * 29 12 11 46 46 H 1.08999 * 109.46064 * 301.73557 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9570 0.7797 0.8896 7 6 4.1148 0.5850 -1.2515 8 6 5.6395 0.7221 -1.2734 9 1 6.0323 0.2698 -2.1841 10 8 6.1944 0.0616 -0.1342 11 6 6.0143 2.2054 -1.2368 12 7 5.4673 2.8198 -0.0204 13 6 5.9231 4.2093 0.1184 14 6 7.4127 4.2291 0.3455 15 6 7.9151 4.1845 1.6333 16 6 9.2798 4.1968 1.8445 17 6 10.1478 4.2653 0.7626 18 8 11.4897 4.2826 0.9671 19 6 12.2763 4.2336 -0.1267 20 1 11.8343 4.2657 -1.1117 21 6 13.6528 4.1420 0.0126 22 7 14.1913 4.1034 1.2124 23 14 14.7425 4.0733 -1.5030 24 1 14.5449 5.3035 -2.3109 25 1 16.1647 3.9786 -1.0861 26 1 14.3846 2.8839 -2.3166 27 6 9.6401 4.3155 -0.5291 28 6 8.2745 4.2979 -0.7340 29 6 4.0011 2.7423 0.0004 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8442 -0.4707 -1.2339 34 1 3.6932 1.0543 -2.1403 35 1 7.1587 0.1106 -0.0821 36 1 5.6024 2.7058 -2.1131 37 1 7.0997 2.3059 -1.2378 38 1 5.6868 4.7616 -0.7911 39 1 5.4200 4.6737 0.9666 40 1 7.2394 4.1361 2.4745 41 1 9.6715 4.1576 2.8502 42 1 15.1542 4.0389 1.3099 43 1 10.3126 4.3692 -1.3725 44 1 7.8792 4.3365 -1.7383 45 1 3.6241 3.2328 0.8978 46 1 3.5986 3.2400 -0.8819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830886771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:58 Heat of formation + Delta-G solvation = -130.315924 kcal Electronic energy + Delta-G solvation = -28887.709002 eV Core-core repulsion = 24743.311594 eV Total energy + Delta-G solvation = -4144.397408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00650 -39.54868 -38.79377 -36.85000 -36.78954 -35.56081 -33.54914 -32.26925 -30.41074 -30.10304 -29.67591 -28.04599 -26.06203 -25.21490 -24.26844 -22.83630 -21.98152 -21.30400 -20.29626 -19.92145 -17.99257 -17.87925 -17.29285 -16.90495 -16.84834 -16.53912 -15.69339 -15.21164 -14.92854 -14.65159 -14.53562 -14.41211 -13.98770 -13.74335 -13.65131 -13.57852 -13.48657 -13.15192 -13.08470 -12.70069 -12.45915 -12.38887 -12.08541 -11.75752 -11.59664 -11.43604 -11.32179 -11.15746 -11.12650 -11.00814 -10.77322 -10.68668 -10.65600 -10.45087 -10.31137 -9.85552 -9.35216 -8.84873 -8.28689 -8.16277 -7.19072 -6.46545 -4.05594 1.92705 2.18779 2.23011 2.44120 3.11326 3.11879 3.15214 3.85636 3.94929 4.19307 4.31440 4.52874 4.63451 4.67607 4.77182 4.83947 4.84859 4.91432 5.07752 5.13406 5.19705 5.26844 5.29590 5.33024 5.35445 5.50434 5.55522 5.57906 5.70064 5.77246 5.80123 5.85490 5.91482 5.95585 6.10503 6.20413 6.41459 6.69616 6.88111 6.96025 7.05076 7.10287 7.25686 7.38449 7.43155 7.46855 7.71977 7.81590 7.98115 8.98850 9.69354 10.71295 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.002272 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.868249 B =12322.174208 C =12767.511096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.509 6.509 5 C -0.072 4.072 6 H 0.128 0.872 7 C -0.104 4.104 8 C 0.113 3.887 9 H 0.063 0.937 10 O -0.554 6.554 11 C 0.015 3.985 12 N -0.520 5.520 13 C 0.115 3.885 14 C -0.178 4.178 15 C -0.050 4.050 16 C -0.193 4.193 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.235 4.235 28 C -0.068 4.068 29 C 0.073 3.927 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.271 0.729 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.897 -7.342 -5.614 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.397 6.397 5 C -0.091 4.091 6 H 0.145 0.855 7 C -0.141 4.141 8 C 0.054 3.946 9 H 0.081 0.919 10 O -0.360 6.360 11 C -0.113 4.113 12 N -0.244 5.244 13 C -0.012 4.012 14 C -0.179 4.179 15 C -0.069 4.069 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.254 4.254 28 C -0.086 4.086 29 C -0.055 4.055 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.056 0.944 37 H 0.113 0.887 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.201 -7.428 -4.788 23.895 hybrid contribution 0.589 0.657 -1.670 1.888 sum -21.612 -6.772 -6.457 23.550 Atomic orbital electron populations 1.23271 0.76472 1.03697 1.02516 1.86534 1.23294 1.33484 1.83978 1.23892 0.92061 0.81231 0.71800 1.90667 1.67304 1.36366 1.45329 1.20992 0.85726 0.99244 1.03146 0.85452 1.21569 0.94525 1.01953 0.96100 1.21695 0.92839 0.91000 0.89115 0.91945 1.86430 1.26371 1.77019 1.46144 1.22977 1.02264 0.95105 0.90985 1.61812 1.06757 1.18291 1.37547 1.20795 0.93170 0.87072 1.00136 1.19024 0.93114 1.12337 0.93458 1.20456 0.93721 0.96976 0.95730 1.20224 0.92166 1.11311 0.97570 1.19400 0.85282 0.92217 0.92905 1.83983 1.10931 1.78674 1.34490 1.21253 0.87632 1.52716 0.85238 0.89187 1.25286 0.96269 0.96540 0.98423 1.70030 1.12194 1.45753 1.21685 0.85793 0.78709 0.79138 0.79855 1.19551 1.20276 1.19519 1.21101 0.95220 1.11851 0.97257 1.20576 0.92843 0.98256 0.96956 1.21858 0.88418 0.93125 1.02136 0.91868 0.91979 0.88068 0.89685 0.90620 0.76845 0.94449 0.88745 0.94931 0.90591 0.87056 0.86593 0.91954 0.85727 0.88066 0.89831 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.49 10.50 -39.25 -0.41 -3.90 16 3 C 0.47 5.17 7.26 36.00 0.26 5.43 16 4 O -0.51 -6.78 15.73 -18.76 -0.30 -7.07 16 5 C -0.07 -0.75 2.64 -91.69 -0.24 -0.99 16 6 H 0.13 1.44 7.80 -51.93 -0.40 1.03 16 7 C -0.10 -0.96 4.94 -26.62 -0.13 -1.09 16 8 C 0.11 1.13 3.80 -26.66 -0.10 1.03 16 9 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 10 O -0.55 -6.35 12.65 -35.23 -0.45 -6.79 16 11 C 0.01 0.17 4.82 -3.83 -0.02 0.15 16 12 N -0.52 -6.42 4.53 -236.12 -1.07 -7.49 16 13 C 0.11 1.51 5.12 -4.98 -0.03 1.49 16 14 C -0.18 -2.87 4.90 -104.58 -0.51 -3.38 16 15 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 16 C -0.19 -3.98 9.99 -39.40 -0.39 -4.38 16 17 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 18 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 19 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 20 H 0.09 2.27 5.20 -52.48 -0.27 1.99 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -24.99 13.67 55.48 0.76 -24.23 16 23 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.23 -4.87 9.17 -39.40 -0.36 -5.23 16 28 C -0.07 -1.15 7.87 -39.61 -0.31 -1.47 16 29 C 0.07 0.82 4.03 -3.83 -0.02 0.81 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.38 3.75 9.08 45.56 0.41 4.17 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 1.20 5.75 -51.93 -0.30 0.91 16 38 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 40 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 41 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 43 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 44 H 0.10 1.49 7.95 -52.49 -0.42 1.07 16 45 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 46 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -31.99 379.01 -7.89 -39.88 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.88 Total: 7.39 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.23 Total: -13.67 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: -0.31 Total: -31.71 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.15 Total: -22.75 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.99 -7.89 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830886771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.437 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds