Wall clock time and date at job start Tue Mar 31 2020 19:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34225 * 116.99995 * 2 1 4 4 O 1.20833 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00340 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.53530 * 300.09998 * 5 3 2 7 7 C 1.53120 * 109.49854 * 60.19602 * 5 3 2 8 8 C 1.53097 * 109.15361 * 177.59789 * 7 5 3 9 9 H 1.08998 * 109.49209 * 182.39602 * 8 7 5 10 10 O 1.42898 * 109.50858 * 62.28260 * 8 7 5 11 11 C 1.53044 * 109.28919 * 302.33727 * 8 7 5 12 12 N 1.46846 * 109.51640 * 59.18381 * 11 8 7 13 13 C 1.46897 * 111.00352 * 174.16672 * 12 11 8 14 14 C 1.50698 * 109.47005 * 293.95369 * 13 12 11 15 15 C 1.38298 * 119.93302 * 269.72719 * 14 13 12 16 16 C 1.38104 * 120.07113 * 179.72765 * 15 14 13 17 17 C 1.38874 * 119.92657 * 0.54092 * 16 15 14 18 18 O 1.35759 * 120.06855 * 179.74869 * 17 16 15 19 19 C 1.34820 * 117.00077 * 174.44632 * 18 17 16 20 20 H 1.08005 * 120.00315 * 5.05842 * 19 18 17 21 21 C 1.38652 * 120.00270 * 185.05920 * 19 18 17 22 22 N 1.31564 * 119.99805 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47131 * 60.00081 * 23 21 19 25 25 H 1.48502 * 109.46731 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47381 * 299.99433 * 23 21 19 27 27 C 1.38878 * 119.86487 * 359.73031 * 17 16 15 28 28 C 1.38100 * 119.93153 * 0.02562 * 27 17 16 29 29 C 1.46845 * 111.19806 * 298.26728 * 12 11 8 30 30 H 1.08994 * 109.46939 * 300.00084 * 1 2 3 31 31 H 1.08993 * 109.46985 * 60.00824 * 1 2 3 32 32 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.52642 * 297.49921 * 7 5 3 34 34 H 1.08995 * 109.52817 * 57.63160 * 7 5 3 35 35 H 0.96699 * 114.00605 * 180.17794 * 10 8 7 36 36 H 1.08998 * 109.46206 * 299.17593 * 11 8 7 37 37 H 1.08998 * 109.46322 * 179.19036 * 11 8 7 38 38 H 1.08996 * 109.46594 * 53.95411 * 13 12 11 39 39 H 1.08998 * 109.46962 * 173.95525 * 13 12 11 40 40 H 1.08004 * 119.96303 * 359.97438 * 15 14 13 41 41 H 1.07994 * 120.03418 * 180.27056 * 16 15 14 42 42 H 0.97000 * 119.99932 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.03398 * 179.97438 * 27 17 16 44 44 H 1.08000 * 119.96540 * 180.02562 * 28 27 17 45 45 H 1.09000 * 109.46624 * 181.75551 * 29 12 11 46 46 H 1.08999 * 109.46064 * 301.73557 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9570 0.7797 0.8896 7 6 4.1148 0.5850 -1.2515 8 6 5.6395 0.7221 -1.2734 9 1 6.0323 0.2698 -2.1841 10 8 6.1944 0.0616 -0.1342 11 6 6.0143 2.2054 -1.2368 12 7 5.4673 2.8198 -0.0204 13 6 5.9231 4.2093 0.1184 14 6 7.4127 4.2291 0.3455 15 6 7.9151 4.1845 1.6333 16 6 9.2798 4.1968 1.8445 17 6 10.1478 4.2653 0.7626 18 8 11.4897 4.2826 0.9671 19 6 12.2763 4.2336 -0.1267 20 1 11.8343 4.2657 -1.1117 21 6 13.6528 4.1420 0.0126 22 7 14.1913 4.1034 1.2124 23 14 14.7425 4.0733 -1.5030 24 1 14.5449 5.3035 -2.3109 25 1 16.1647 3.9786 -1.0861 26 1 14.3846 2.8839 -2.3166 27 6 9.6401 4.3155 -0.5291 28 6 8.2745 4.2979 -0.7340 29 6 4.0011 2.7423 0.0004 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8442 -0.4707 -1.2339 34 1 3.6932 1.0543 -2.1403 35 1 7.1587 0.1106 -0.0821 36 1 5.6024 2.7058 -2.1131 37 1 7.0997 2.3059 -1.2378 38 1 5.6868 4.7616 -0.7911 39 1 5.4200 4.6737 0.9666 40 1 7.2394 4.1361 2.4745 41 1 9.6715 4.1576 2.8502 42 1 15.1542 4.0389 1.3099 43 1 10.3126 4.3692 -1.3725 44 1 7.8792 4.3365 -1.7383 45 1 3.6241 3.2328 0.8978 46 1 3.5986 3.2400 -0.8819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830886771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:57 Heat of formation + Delta-G solvation = -152.968873 kcal Electronic energy + Delta-G solvation = -28888.691307 eV Core-core repulsion = 24743.311594 eV Total energy + Delta-G solvation = -4145.379713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84363 -40.87418 -40.05135 -38.35494 -37.61008 -36.59450 -34.63120 -34.10342 -31.80083 -31.25085 -30.92146 -28.67929 -27.64037 -26.66387 -25.20056 -23.84946 -23.55346 -22.29548 -21.64454 -20.74423 -19.80084 -18.83520 -18.65697 -18.04465 -17.68140 -17.36392 -16.56504 -16.48897 -16.37224 -16.14553 -15.57834 -15.54493 -15.44975 -15.10103 -14.81126 -14.79268 -14.37973 -14.29598 -14.10628 -13.89065 -13.87014 -13.57037 -13.07186 -12.99413 -12.91639 -12.59274 -12.40783 -12.36703 -12.28043 -12.16569 -12.08048 -11.97411 -11.83283 -11.70420 -11.21878 -11.13637 -10.77052 -10.67135 -9.71931 -9.24962 -8.85100 -8.44264 -6.12229 0.64221 0.70628 1.08858 1.36433 1.46730 1.52540 1.67088 2.19602 2.75142 3.02122 3.27720 3.43487 3.53988 3.56614 3.75475 3.86991 3.92938 4.07691 4.11516 4.20133 4.25198 4.30727 4.32263 4.33032 4.43860 4.56765 4.63790 4.65360 4.68592 4.71316 4.78134 4.80988 4.84298 4.93500 5.06363 5.12410 5.14937 5.18344 5.33218 5.34918 5.61462 5.74980 5.83654 6.05709 6.07142 6.13626 6.27446 6.66107 6.94622 7.00455 7.82573 8.78738 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.002272 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.868249 B =12322.174208 C =12767.511096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.067 4.067 6 H 0.119 0.881 7 C -0.100 4.100 8 C 0.113 3.887 9 H 0.082 0.918 10 O -0.569 6.569 11 C 0.014 3.986 12 N -0.529 5.529 13 C 0.116 3.884 14 C -0.149 4.149 15 C -0.045 4.045 16 C -0.205 4.205 17 C 0.115 3.885 18 O -0.234 6.234 19 C -0.411 4.411 20 H 0.102 0.898 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.017 2.983 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.256 1.256 27 C -0.240 4.240 28 C -0.059 4.059 29 C 0.078 3.922 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.388 0.612 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.135 0.865 45 H 0.079 0.921 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.803 -8.008 -7.826 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.087 4.087 6 H 0.137 0.863 7 C -0.138 4.138 8 C 0.054 3.946 9 H 0.099 0.901 10 O -0.377 6.377 11 C -0.114 4.114 12 N -0.253 5.253 13 C -0.011 4.011 14 C -0.150 4.150 15 C -0.064 4.064 16 C -0.224 4.224 17 C 0.065 3.935 18 O -0.141 6.141 19 C -0.487 4.487 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.180 1.180 27 C -0.259 4.259 28 C -0.077 4.077 29 C -0.050 4.050 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.153 0.847 45 H 0.098 0.902 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -25.178 -8.110 -7.010 27.365 hybrid contribution 1.050 0.818 -0.939 1.629 sum -24.128 -7.292 -7.949 26.430 Atomic orbital electron populations 1.23564 0.74771 1.05726 1.02559 1.86522 1.24989 1.32716 1.83489 1.23925 0.92176 0.81197 0.71046 1.90658 1.67887 1.37213 1.46734 1.20911 0.85520 0.98753 1.03483 0.86344 1.21591 0.93962 1.02304 0.95932 1.21809 0.93247 0.90142 0.89421 0.90058 1.86415 1.26932 1.77288 1.47018 1.23013 1.01274 0.96120 0.91028 1.61728 1.07593 1.17488 1.38503 1.20799 0.90540 0.88173 1.01583 1.19456 0.95088 1.07910 0.92521 1.20788 0.92486 0.95604 0.97515 1.20428 0.93469 1.11693 0.96814 1.19922 0.84384 0.94217 0.94975 1.83948 1.12973 1.81842 1.35305 1.21758 0.88341 1.52756 0.85850 0.88039 1.26584 0.97598 0.95989 1.02025 1.70187 1.12492 1.48825 1.24467 0.84663 0.76231 0.79911 0.75520 1.18238 1.19869 1.18023 1.21188 0.96882 1.11954 0.95894 1.20877 0.91210 0.96616 0.99015 1.21793 0.87440 0.93694 1.02060 0.92036 0.91776 0.85125 0.89155 0.89252 0.76327 0.93055 0.90236 0.93372 0.89320 0.84192 0.87325 0.91939 0.86436 0.84698 0.90219 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -6.27 10.50 -51.37 -0.54 -6.81 16 3 C 0.47 9.47 7.26 71.23 0.52 9.98 16 4 O -0.54 -13.27 15.73 21.94 0.35 -12.93 16 5 C -0.07 -1.24 2.64 -11.49 -0.03 -1.27 16 6 H 0.12 2.45 7.80 -2.39 -0.02 2.43 16 7 C -0.10 -1.55 4.94 30.67 0.15 -1.40 16 8 C 0.11 1.91 3.80 30.64 0.12 2.03 16 9 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 10 O -0.57 -11.90 12.65 -148.98 -1.88 -13.79 16 11 C 0.01 0.26 4.82 86.33 0.42 0.68 16 12 N -0.53 -11.30 4.53 -900.94 -4.08 -15.37 16 13 C 0.12 2.60 5.12 85.56 0.44 3.03 16 14 C -0.15 -4.36 4.90 -19.83 -0.10 -4.45 16 15 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 16 C -0.20 -8.61 9.99 22.39 0.22 -8.38 16 17 C 0.12 5.62 6.65 22.58 0.15 5.77 16 18 O -0.23 -13.96 9.76 -22.74 -0.22 -14.18 16 19 C -0.41 -23.59 9.49 67.92 0.64 -22.94 16 20 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 21 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 22 N -0.92 -56.41 13.67 21.61 0.30 -56.12 16 23 Si 1.02 42.30 29.55 68.60 2.03 44.32 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 27 C -0.24 -9.95 9.17 22.39 0.21 -9.75 16 28 C -0.06 -1.87 7.87 22.25 0.18 -1.69 16 29 C 0.08 1.54 4.03 86.33 0.35 1.89 16 30 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.39 7.06 9.08 -74.06 -0.67 6.38 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.78 5.75 -2.39 -0.01 1.77 16 38 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 39 H 0.09 1.84 7.92 -2.39 -0.02 1.82 16 40 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 41 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.12 4.97 5.64 -2.91 -0.02 4.96 16 44 H 0.14 3.43 7.95 -2.91 -0.02 3.40 16 45 H 0.08 1.64 7.99 -2.39 -0.02 1.62 16 46 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 Total: -1.00 -73.63 379.01 1.41 -72.22 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.33 Total: 29.87 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.14 Total: -27.21 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -3.78 Total: -71.49 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -2.30 Total: -47.70 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -73.63 1.41 -72.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830886771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.753 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds