Wall clock time and date at job start Tue Mar 31 2020 19:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34221 * 117.00319 * 2 1 4 4 O 1.20833 * 120.00037 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00262 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.53548 * 60.09894 * 5 3 2 7 7 C 1.53118 * 109.49927 * 299.99580 * 5 3 2 8 8 C 1.53126 * 109.15804 * 182.40616 * 7 5 3 9 9 H 1.08999 * 109.53242 * 297.69394 * 8 7 5 10 10 O 1.42903 * 109.50282 * 177.59962 * 8 7 5 11 11 C 1.53027 * 109.27792 * 57.65540 * 8 7 5 12 12 N 1.46843 * 109.52586 * 300.81956 * 11 8 7 13 13 C 1.46905 * 111.00096 * 185.83795 * 12 11 8 14 14 C 1.50701 * 109.46928 * 66.05024 * 13 12 11 15 15 C 1.38295 * 119.93297 * 89.99748 * 14 13 12 16 16 C 1.38099 * 120.06865 * 180.25412 * 15 14 13 17 17 C 1.38882 * 119.93206 * 359.47410 * 16 15 14 18 18 O 1.35746 * 120.07145 * 180.25590 * 17 16 15 19 19 C 1.34834 * 117.00340 * 174.73672 * 18 17 16 20 20 H 1.08003 * 119.99155 * 5.05417 * 19 18 17 21 21 C 1.38652 * 120.00189 * 185.05311 * 19 18 17 22 22 N 1.31551 * 120.00092 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99829 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47080 * 90.00176 * 23 21 19 25 25 H 1.48495 * 109.47054 * 209.99795 * 23 21 19 26 26 H 1.48500 * 109.47285 * 330.00378 * 23 21 19 27 27 C 1.38876 * 119.85943 * 0.52538 * 17 16 15 28 28 C 1.38100 * 119.93177 * 359.72571 * 27 17 16 29 29 C 1.46846 * 111.19660 * 61.74695 * 12 11 8 30 30 H 1.08997 * 109.47126 * 299.99835 * 1 2 3 31 31 H 1.09001 * 109.47416 * 59.99953 * 1 2 3 32 32 H 1.09002 * 109.47421 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.52087 * 62.50248 * 7 5 3 34 34 H 1.08997 * 109.58000 * 302.34393 * 7 5 3 35 35 H 0.96699 * 114.00246 * 180.19590 * 10 8 7 36 36 H 1.09002 * 109.46319 * 180.80385 * 11 8 7 37 37 H 1.09005 * 109.46716 * 60.84024 * 11 8 7 38 38 H 1.08996 * 109.47200 * 306.05252 * 13 12 11 39 39 H 1.09003 * 109.46980 * 186.04406 * 13 12 11 40 40 H 1.08000 * 119.96836 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.03655 * 179.72759 * 16 15 14 42 42 H 0.97006 * 120.00187 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.03796 * 179.70626 * 27 17 16 44 44 H 1.07997 * 119.96864 * 179.97438 * 28 27 17 45 45 H 1.08997 * 109.46925 * 58.27043 * 29 12 11 46 46 H 1.09005 * 109.46322 * 178.24542 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9567 0.7826 -0.8913 7 6 4.1150 0.5806 1.2491 8 6 5.6400 0.7175 1.2713 9 1 6.0636 0.2164 0.4010 10 8 6.1552 0.1208 2.4632 11 6 6.0146 2.2009 1.2395 12 7 5.4674 2.8193 0.0252 13 6 5.9232 4.2094 -0.1089 14 6 7.4128 4.2299 -0.3362 15 6 7.9150 4.1840 -1.6240 16 6 9.2797 4.1973 -1.8353 17 6 10.1478 4.2678 -0.7536 18 8 11.4896 4.2863 -0.9583 19 6 12.2718 4.4655 0.1252 20 1 11.8297 4.5045 1.1098 21 6 13.6437 4.5996 -0.0246 22 7 14.1821 4.5525 -1.2239 23 14 14.7272 4.8485 1.4766 24 1 15.1633 3.5277 1.9968 25 1 15.9191 5.6499 1.0993 26 1 13.9607 5.5657 2.5269 27 6 9.6404 4.3138 0.5384 28 6 8.2748 4.2949 0.7434 29 6 4.0011 2.7421 0.0045 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.8443 -0.4750 1.2279 34 1 3.6944 1.0466 2.1401 35 1 7.1173 0.1736 2.5454 36 1 7.0999 2.3015 1.2408 37 1 5.6029 2.6985 2.1177 38 1 5.6872 4.7587 0.8025 39 1 5.4200 4.6767 -0.9554 40 1 7.2394 4.1331 -2.4650 41 1 9.6714 4.1570 -2.8410 42 1 15.1420 4.6459 -1.3287 43 1 10.3129 4.3639 1.3819 44 1 7.8796 4.3302 1.7478 45 1 3.5987 3.2370 0.8884 46 1 3.6240 3.2357 -0.8912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830886772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:02 Heat of formation + Delta-G solvation = -132.762217 kcal Electronic energy + Delta-G solvation = -28673.007514 eV Core-core repulsion = 24528.504027 eV Total energy + Delta-G solvation = -4144.503487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07413 -39.57126 -38.81007 -36.94734 -36.88844 -35.92358 -33.69797 -32.28866 -30.34837 -30.09070 -29.66191 -28.09151 -26.09465 -25.24336 -24.32344 -22.78870 -22.01223 -21.36789 -20.32677 -20.04801 -18.12019 -18.00845 -17.41664 -17.01030 -16.86432 -16.48930 -15.76512 -15.47486 -15.15381 -14.67161 -14.56080 -14.39402 -13.97124 -13.84964 -13.75435 -13.51063 -13.40787 -13.32256 -12.84683 -12.75433 -12.64085 -12.42191 -12.30569 -11.88291 -11.55734 -11.47867 -11.36413 -11.21814 -11.15563 -10.99962 -10.81687 -10.70036 -10.65980 -10.46300 -10.41905 -10.04847 -9.36494 -8.86787 -8.42315 -8.19136 -7.21476 -6.48001 -4.06969 1.83927 2.14788 2.19664 2.36913 3.10140 3.11529 3.16237 3.70806 3.93885 3.98595 4.33319 4.50183 4.60069 4.68920 4.73629 4.78252 4.81136 4.82708 5.03866 5.06960 5.15225 5.24038 5.25072 5.27032 5.33012 5.45552 5.52396 5.57802 5.68884 5.72631 5.76209 5.85877 5.91136 5.94203 6.02916 6.18370 6.38972 6.67173 6.84906 6.87708 6.95784 7.06116 7.23351 7.35509 7.38885 7.41315 7.49831 7.79432 7.96789 8.97590 9.67586 10.69864 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.002235 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.567323 B =12525.859491 C =13155.376914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.505 6.505 5 C -0.074 4.074 6 H 0.123 0.877 7 C -0.104 4.104 8 C 0.111 3.889 9 H 0.071 0.929 10 O -0.568 6.568 11 C 0.017 3.983 12 N -0.527 5.527 13 C 0.116 3.884 14 C -0.181 4.181 15 C -0.051 4.051 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.235 4.235 28 C -0.066 4.066 29 C 0.069 3.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.385 0.615 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.043 0.957 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.974 -7.842 3.883 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.392 6.392 5 C -0.094 4.094 6 H 0.140 0.860 7 C -0.142 4.142 8 C 0.052 3.948 9 H 0.089 0.911 10 O -0.373 6.373 11 C -0.111 4.111 12 N -0.253 5.253 13 C -0.010 4.010 14 C -0.183 4.183 15 C -0.070 4.070 16 C -0.214 4.214 17 C 0.102 3.898 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.254 4.254 28 C -0.085 4.085 29 C -0.060 4.060 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.112 0.888 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.062 0.938 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.284 -7.932 3.290 23.881 hybrid contribution 0.625 0.779 1.368 1.694 sum -21.658 -7.153 4.658 23.280 Atomic orbital electron populations 1.23288 0.76225 1.03799 1.02603 1.86517 1.23486 1.33328 1.83945 1.23610 0.91704 0.81356 0.71978 1.90680 1.67148 1.36332 1.45070 1.20963 0.86666 0.99446 1.02285 0.85965 1.21458 0.94688 1.01880 0.96127 1.21666 0.93222 0.92131 0.87812 0.91148 1.86438 1.27363 1.80901 1.42621 1.22941 1.02244 0.94857 0.91032 1.61858 1.06849 1.18905 1.37693 1.20779 0.93192 0.86669 1.00344 1.19025 0.93079 1.12652 0.93508 1.20452 0.93753 0.97080 0.95696 1.20223 0.92156 1.11457 0.97517 1.19407 0.85243 0.92222 0.92896 1.83981 1.11010 1.77596 1.35452 1.21314 0.88115 1.51581 0.85813 0.89090 1.25292 0.96295 0.96555 0.98388 1.70035 1.12301 1.45729 1.21557 0.85718 0.79261 0.78699 0.79789 1.19860 1.20245 1.19218 1.21112 0.95244 1.11812 0.97241 1.20592 0.92856 0.98037 0.97011 1.21917 0.88421 0.93005 1.02611 0.91882 0.91799 0.87982 0.89661 0.90969 0.76706 0.88815 0.94306 0.94661 0.90398 0.87018 0.86564 0.91989 0.85658 0.87975 0.93827 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.26 10.49 -39.23 -0.41 -3.67 16 3 C 0.47 4.88 7.26 36.00 0.26 5.15 16 4 O -0.51 -6.44 15.73 -18.76 -0.30 -6.73 16 5 C -0.07 -0.70 2.79 -91.69 -0.26 -0.96 16 6 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.10 -1.00 4.87 -26.61 -0.13 -1.13 16 8 C 0.11 1.16 3.63 -26.65 -0.10 1.06 16 9 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 10 O -0.57 -6.05 13.32 -35.23 -0.47 -6.52 16 11 C 0.02 0.20 4.78 -3.84 -0.02 0.18 16 12 N -0.53 -6.26 4.65 -236.11 -1.10 -7.36 16 13 C 0.12 1.50 5.12 -4.97 -0.03 1.47 16 14 C -0.18 -2.89 4.90 -104.57 -0.51 -3.41 16 15 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 16 C -0.19 -3.97 9.99 -39.39 -0.39 -4.36 16 17 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 18 O -0.18 -4.96 9.76 0.05 0.00 -4.96 16 19 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 20 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 23 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 C -0.23 -4.87 9.17 -39.40 -0.36 -5.23 16 28 C -0.07 -1.13 7.87 -39.61 -0.31 -1.45 16 29 C 0.07 0.73 4.03 -3.83 -0.02 0.71 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.38 2.94 9.08 45.56 0.41 3.35 16 36 H 0.09 1.21 5.75 -51.93 -0.30 0.92 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 39 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 44 H 0.10 1.52 7.95 -52.49 -0.42 1.10 16 45 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 46 H 0.09 0.92 7.99 -51.93 -0.41 0.50 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -32.14 380.01 -7.95 -40.09 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.90 Total: 6.44 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.24 Total: -13.99 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: -0.34 Total: -31.54 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.18 Total: -21.89 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.14 -7.95 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830886772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.672 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds