Wall clock time and date at job start Tue Mar 31 2020 19:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99764 * 2 1 4 4 O 1.20820 * 120.00078 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99837 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.53377 * 300.09516 * 5 3 2 7 7 C 1.53121 * 109.50673 * 60.19534 * 5 3 2 8 8 C 1.53114 * 109.16112 * 177.59417 * 7 5 3 9 9 H 1.09003 * 109.53619 * 62.30989 * 8 7 5 10 10 O 1.42901 * 109.50402 * 182.40438 * 8 7 5 11 11 C 1.53037 * 109.27845 * 302.34781 * 8 7 5 12 12 N 1.46839 * 109.52620 * 59.18175 * 11 8 7 13 13 C 1.46903 * 111.00325 * 174.16044 * 12 11 8 14 14 C 1.50704 * 109.47038 * 294.20791 * 13 12 11 15 15 C 1.38297 * 119.92710 * 269.72911 * 14 13 12 16 16 C 1.38108 * 120.06558 * 179.72843 * 15 14 13 17 17 C 1.38877 * 119.92530 * 0.56074 * 16 15 14 18 18 O 1.35752 * 120.06640 * 179.68764 * 17 16 15 19 19 C 1.34831 * 117.00177 * 174.49011 * 18 17 16 20 20 H 1.08002 * 119.99882 * 5.05946 * 19 18 17 21 21 C 1.38658 * 120.00128 * 185.05462 * 19 18 17 22 22 N 1.31558 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47580 * 60.00602 * 23 21 19 25 25 H 1.48500 * 109.46886 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47240 * 300.00119 * 23 21 19 27 27 C 1.38880 * 119.86900 * 359.70825 * 17 16 15 28 28 C 1.38104 * 119.92419 * 0.02562 * 27 17 16 29 29 C 1.46853 * 111.19757 * 298.25773 * 12 11 8 30 30 H 1.09003 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47142 * 299.99383 * 1 2 3 32 32 H 1.08998 * 109.47439 * 60.00119 * 1 2 3 33 33 H 1.08998 * 109.52036 * 297.50458 * 7 5 3 34 34 H 1.09006 * 109.51694 * 57.69038 * 7 5 3 35 35 H 0.96701 * 113.99979 * 179.80205 * 10 8 7 36 36 H 1.08997 * 109.46191 * 299.15697 * 11 8 7 37 37 H 1.09004 * 109.46180 * 179.19529 * 11 8 7 38 38 H 1.09004 * 109.47071 * 54.20641 * 13 12 11 39 39 H 1.08999 * 109.47248 * 174.21039 * 13 12 11 40 40 H 1.07993 * 119.97347 * 359.97206 * 15 14 13 41 41 H 1.07999 * 120.03589 * 180.27201 * 16 15 14 42 42 H 0.97001 * 119.99965 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.03679 * 180.02562 * 27 17 16 44 44 H 1.08002 * 119.95985 * 179.97438 * 28 27 17 45 45 H 1.08998 * 109.45813 * 301.72591 * 29 12 11 46 46 H 1.08997 * 109.46300 * 181.75889 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9575 0.7794 0.8880 7 6 4.1139 0.5855 -1.2534 8 6 5.6387 0.7226 -1.2765 9 1 6.0632 0.2182 -0.4084 10 8 6.1529 0.1304 -2.4710 11 6 6.0133 2.2059 -1.2393 12 7 5.4672 2.8197 -0.0222 13 6 5.9231 4.2093 0.1168 14 6 7.4139 4.2293 0.3366 15 6 7.9225 4.1826 1.6217 16 6 9.2883 4.1951 1.8262 17 6 10.1508 4.2664 0.7401 18 8 11.4937 4.2852 0.9381 19 6 12.2751 4.2399 -0.1598 20 1 11.8281 4.2736 -1.1425 21 6 13.6524 4.1500 -0.0274 22 7 14.1968 4.1085 1.1695 23 14 14.7347 4.0864 -1.5485 24 1 14.5314 5.3181 -2.3527 25 1 16.1590 3.9917 -1.1389 26 1 14.3744 2.8982 -2.3632 27 6 9.6368 4.3187 -0.5490 28 6 8.2702 4.3003 -0.7471 29 6 4.0009 2.7422 -0.0004 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.8432 -0.4702 -1.2359 34 1 3.6923 1.0560 -2.1417 35 1 7.1149 0.1836 -2.5538 36 1 5.6008 2.7067 -2.1152 37 1 7.0987 2.3066 -1.2412 38 1 5.6821 4.7632 -0.7906 39 1 5.4241 4.6719 0.9683 40 1 7.2512 4.1323 2.4662 41 1 9.6851 4.1542 2.8298 42 1 15.1603 4.0453 1.2622 43 1 10.3051 4.3738 -1.3957 44 1 7.8698 4.3415 -1.7493 45 1 3.5978 3.2405 -0.8820 46 1 3.6247 3.2324 0.8975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830886773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:06 Heat of formation + Delta-G solvation = -132.671524 kcal Electronic energy + Delta-G solvation = -28698.427997 eV Core-core repulsion = 24553.928442 eV Total energy + Delta-G solvation = -4144.499554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07227 -39.56910 -38.80752 -36.94343 -36.88709 -35.91913 -33.69452 -32.28714 -30.34621 -30.08725 -29.66022 -28.08864 -26.09290 -25.24106 -24.31986 -22.78440 -22.01237 -21.36470 -20.32523 -20.04234 -18.11657 -18.00712 -17.41232 -17.00812 -16.86054 -16.48487 -15.76272 -15.46902 -15.15399 -14.66767 -14.56314 -14.39001 -13.97936 -13.83854 -13.73749 -13.53735 -13.41055 -13.30088 -12.84155 -12.75129 -12.63796 -12.42106 -12.30664 -11.87426 -11.55714 -11.47677 -11.35958 -11.20746 -11.15151 -10.99488 -10.80605 -10.70158 -10.67858 -10.46750 -10.41794 -10.04292 -9.36795 -8.86311 -8.41849 -8.19090 -7.21514 -6.47789 -4.06844 1.84212 2.14968 2.19640 2.37144 3.11022 3.11610 3.14873 3.71303 3.93906 3.99196 4.33724 4.50644 4.60143 4.69373 4.73884 4.78775 4.81466 4.83133 5.03925 5.07560 5.15542 5.24387 5.25417 5.27398 5.32910 5.45909 5.52568 5.58243 5.68964 5.72894 5.76326 5.85879 5.91653 5.94840 6.03219 6.18318 6.38949 6.67196 6.85022 6.87969 6.96082 7.05980 7.23219 7.35497 7.39157 7.41302 7.50661 7.79434 7.96853 8.97613 9.67615 10.69992 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.002283 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.755201 B =12263.158928 C =12971.112320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.505 6.505 5 C -0.074 4.074 6 H 0.122 0.878 7 C -0.104 4.104 8 C 0.111 3.889 9 H 0.071 0.929 10 O -0.568 6.568 11 C 0.018 3.982 12 N -0.527 5.527 13 C 0.116 3.884 14 C -0.181 4.181 15 C -0.051 4.051 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.235 4.235 28 C -0.066 4.066 29 C 0.069 3.931 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.385 0.615 36 H 0.039 0.961 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.043 0.957 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.975 -7.223 -3.776 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.392 6.392 5 C -0.094 4.094 6 H 0.140 0.860 7 C -0.141 4.141 8 C 0.052 3.948 9 H 0.089 0.911 10 O -0.373 6.373 11 C -0.111 4.111 12 N -0.253 5.253 13 C -0.010 4.010 14 C -0.183 4.183 15 C -0.070 4.070 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.080 6.080 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.254 4.254 28 C -0.085 4.085 29 C -0.059 4.059 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.062 0.938 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.278 -7.314 -3.182 23.663 hybrid contribution 0.618 0.631 -1.381 1.639 sum -21.660 -6.683 -4.563 23.122 Atomic orbital electron populations 1.23287 0.76232 1.03798 1.02598 1.86520 1.23483 1.33327 1.83948 1.23608 0.91703 0.81353 0.71973 1.90676 1.67142 1.36341 1.45070 1.20965 0.86671 0.99468 1.02273 0.85967 1.21459 0.94705 1.01903 0.96080 1.21665 0.93219 0.92188 0.87760 0.91144 1.86437 1.27403 1.81123 1.42367 1.22942 1.02265 0.94886 0.90979 1.61857 1.06876 1.19077 1.37498 1.20781 0.93165 0.86680 1.00350 1.19021 0.93086 1.12654 0.93505 1.20455 0.93716 0.97093 0.95727 1.20226 0.92210 1.11362 0.97548 1.19406 0.85279 0.92163 0.92937 1.83982 1.10980 1.78580 1.34471 1.21265 0.87695 1.52755 0.85156 0.89146 1.25292 0.96240 0.96493 0.98483 1.70027 1.12029 1.45675 1.21903 0.85788 0.78672 0.79175 0.79840 1.19519 1.20268 1.19489 1.21114 0.95191 1.11782 0.97322 1.20590 0.92877 0.98043 0.96988 1.21914 0.88424 0.93000 1.02610 0.87984 0.91802 0.91883 0.89656 0.90975 0.76688 0.94313 0.88797 0.94674 0.90404 0.87022 0.86563 0.91934 0.85658 0.87974 0.93830 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.28 10.50 -39.25 -0.41 -3.69 16 3 C 0.47 4.90 7.26 36.00 0.26 5.17 16 4 O -0.51 -6.45 15.73 -18.75 -0.29 -6.75 16 5 C -0.07 -0.71 2.79 -91.69 -0.26 -0.96 16 6 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.10 -1.00 4.87 -26.61 -0.13 -1.13 16 8 C 0.11 1.17 3.63 -26.65 -0.10 1.07 16 9 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 10 O -0.57 -6.12 13.32 -35.23 -0.47 -6.59 16 11 C 0.02 0.20 4.78 -3.84 -0.02 0.19 16 12 N -0.53 -6.29 4.65 -236.11 -1.10 -7.39 16 13 C 0.12 1.50 5.12 -4.97 -0.03 1.47 16 14 C -0.18 -2.89 4.89 -104.58 -0.51 -3.40 16 15 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 16 C -0.19 -3.97 9.99 -39.39 -0.39 -4.36 16 17 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 18 O -0.18 -4.95 9.76 0.04 0.00 -4.95 16 19 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 20 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 23 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.23 -4.86 9.17 -39.39 -0.36 -5.23 16 28 C -0.07 -1.13 7.86 -39.61 -0.31 -1.45 16 29 C 0.07 0.73 4.04 -3.83 -0.02 0.72 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.38 3.01 9.08 45.56 0.41 3.42 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 1.23 5.75 -51.93 -0.30 0.93 16 38 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 39 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 44 H 0.10 1.52 7.95 -52.49 -0.42 1.10 16 45 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 46 H 0.09 0.92 7.99 -51.93 -0.42 0.50 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -32.10 380.01 -7.95 -40.05 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.90 Total: 6.61 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.24 Total: -13.96 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: -0.34 Total: -31.56 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.18 Total: -21.98 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.10 -7.95 -40.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830886773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.625 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds