Wall clock time and date at job start Tue Mar 31 2020 19:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99764 * 2 1 4 4 O 1.20820 * 120.00078 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99837 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.53377 * 300.09516 * 5 3 2 7 7 C 1.53121 * 109.50673 * 60.19534 * 5 3 2 8 8 C 1.53114 * 109.16112 * 177.59417 * 7 5 3 9 9 H 1.09003 * 109.53619 * 62.30989 * 8 7 5 10 10 O 1.42901 * 109.50402 * 182.40438 * 8 7 5 11 11 C 1.53037 * 109.27845 * 302.34781 * 8 7 5 12 12 N 1.46839 * 109.52620 * 59.18175 * 11 8 7 13 13 C 1.46903 * 111.00325 * 174.16044 * 12 11 8 14 14 C 1.50704 * 109.47038 * 294.20791 * 13 12 11 15 15 C 1.38297 * 119.92710 * 269.72911 * 14 13 12 16 16 C 1.38108 * 120.06558 * 179.72843 * 15 14 13 17 17 C 1.38877 * 119.92530 * 0.56074 * 16 15 14 18 18 O 1.35752 * 120.06640 * 179.68764 * 17 16 15 19 19 C 1.34831 * 117.00177 * 174.49011 * 18 17 16 20 20 H 1.08002 * 119.99882 * 5.05946 * 19 18 17 21 21 C 1.38658 * 120.00128 * 185.05462 * 19 18 17 22 22 N 1.31558 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47580 * 60.00602 * 23 21 19 25 25 H 1.48500 * 109.46886 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47240 * 300.00119 * 23 21 19 27 27 C 1.38880 * 119.86900 * 359.70825 * 17 16 15 28 28 C 1.38104 * 119.92419 * 0.02562 * 27 17 16 29 29 C 1.46853 * 111.19757 * 298.25773 * 12 11 8 30 30 H 1.09003 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47142 * 299.99383 * 1 2 3 32 32 H 1.08998 * 109.47439 * 60.00119 * 1 2 3 33 33 H 1.08998 * 109.52036 * 297.50458 * 7 5 3 34 34 H 1.09006 * 109.51694 * 57.69038 * 7 5 3 35 35 H 0.96701 * 113.99979 * 179.80205 * 10 8 7 36 36 H 1.08997 * 109.46191 * 299.15697 * 11 8 7 37 37 H 1.09004 * 109.46180 * 179.19529 * 11 8 7 38 38 H 1.09004 * 109.47071 * 54.20641 * 13 12 11 39 39 H 1.08999 * 109.47248 * 174.21039 * 13 12 11 40 40 H 1.07993 * 119.97347 * 359.97206 * 15 14 13 41 41 H 1.07999 * 120.03589 * 180.27201 * 16 15 14 42 42 H 0.97001 * 119.99965 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.03679 * 180.02562 * 27 17 16 44 44 H 1.08002 * 119.95985 * 179.97438 * 28 27 17 45 45 H 1.08998 * 109.45813 * 301.72591 * 29 12 11 46 46 H 1.08997 * 109.46300 * 181.75889 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9575 0.7794 0.8880 7 6 4.1139 0.5855 -1.2534 8 6 5.6387 0.7226 -1.2765 9 1 6.0632 0.2182 -0.4084 10 8 6.1529 0.1304 -2.4710 11 6 6.0133 2.2059 -1.2393 12 7 5.4672 2.8197 -0.0222 13 6 5.9231 4.2093 0.1168 14 6 7.4139 4.2293 0.3366 15 6 7.9225 4.1826 1.6217 16 6 9.2883 4.1951 1.8262 17 6 10.1508 4.2664 0.7401 18 8 11.4937 4.2852 0.9381 19 6 12.2751 4.2399 -0.1598 20 1 11.8281 4.2736 -1.1425 21 6 13.6524 4.1500 -0.0274 22 7 14.1968 4.1085 1.1695 23 14 14.7347 4.0864 -1.5485 24 1 14.5314 5.3181 -2.3527 25 1 16.1590 3.9917 -1.1389 26 1 14.3744 2.8982 -2.3632 27 6 9.6368 4.3187 -0.5490 28 6 8.2702 4.3003 -0.7471 29 6 4.0009 2.7422 -0.0004 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.8432 -0.4702 -1.2359 34 1 3.6923 1.0560 -2.1417 35 1 7.1149 0.1836 -2.5538 36 1 5.6008 2.7067 -2.1152 37 1 7.0987 2.3066 -1.2412 38 1 5.6821 4.7632 -0.7906 39 1 5.4241 4.6719 0.9683 40 1 7.2512 4.1323 2.4662 41 1 9.6851 4.1542 2.8298 42 1 15.1603 4.0453 1.2622 43 1 10.3051 4.3738 -1.3957 44 1 7.8698 4.3415 -1.7493 45 1 3.5978 3.2405 -0.8820 46 1 3.6247 3.2324 0.8975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830886773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:05 Heat of formation + Delta-G solvation = -155.580357 kcal Electronic energy + Delta-G solvation = -28699.421398 eV Core-core repulsion = 24553.928442 eV Total energy + Delta-G solvation = -4145.492956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86940 -40.88762 -40.05890 -38.38716 -37.66870 -36.95567 -34.75639 -34.14131 -31.80380 -31.25666 -30.80899 -28.69094 -27.65660 -26.69834 -25.23730 -23.80793 -23.56686 -22.31397 -21.68701 -20.86005 -19.80855 -18.92896 -18.77212 -18.20145 -17.64149 -17.27693 -16.61867 -16.60280 -16.48672 -16.24138 -15.84936 -15.49993 -15.38245 -15.25517 -14.86508 -14.56680 -14.43016 -14.31475 -14.24251 -13.95958 -13.62491 -13.54342 -13.40578 -13.01239 -12.94154 -12.76154 -12.44350 -12.31677 -12.24311 -12.16781 -12.08239 -11.96020 -11.84055 -11.77026 -11.30287 -11.15603 -10.89840 -10.76637 -9.73194 -9.38878 -8.87657 -8.45139 -6.13090 0.63042 0.68914 1.05725 1.36122 1.46170 1.52051 1.62171 2.19034 2.71085 2.95789 3.13137 3.32338 3.55393 3.57211 3.71848 3.85406 3.96361 4.02387 4.06950 4.11374 4.23478 4.26414 4.31317 4.33462 4.41437 4.43357 4.62411 4.63105 4.65396 4.71421 4.73102 4.80668 4.83517 4.89886 5.07280 5.10850 5.11787 5.17383 5.31418 5.33391 5.59961 5.74161 5.80250 5.98375 6.02567 6.05454 6.26064 6.63601 6.80139 6.99641 7.81306 8.77780 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.002283 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.755201 B =12263.158928 C =12971.112320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.476 3.524 4 O -0.532 6.532 5 C -0.068 4.068 6 H 0.135 0.865 7 C -0.098 4.098 8 C 0.115 3.885 9 H 0.071 0.929 10 O -0.579 6.579 11 C 0.020 3.980 12 N -0.530 5.530 13 C 0.117 3.883 14 C -0.152 4.152 15 C -0.044 4.044 16 C -0.205 4.205 17 C 0.115 3.885 18 O -0.233 6.233 19 C -0.412 4.412 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.017 2.983 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.241 4.241 28 C -0.060 4.060 29 C 0.073 3.927 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.272 0.728 43 H 0.117 0.883 44 H 0.132 0.868 45 H 0.038 0.962 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.923 -7.940 -5.093 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.422 6.422 5 C -0.088 4.088 6 H 0.153 0.847 7 C -0.136 4.136 8 C 0.055 3.945 9 H 0.089 0.911 10 O -0.386 6.386 11 C -0.109 4.109 12 N -0.256 5.256 13 C -0.010 4.010 14 C -0.154 4.154 15 C -0.063 4.063 16 C -0.225 4.225 17 C 0.065 3.935 18 O -0.140 6.140 19 C -0.488 4.488 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.836 3.164 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.261 4.261 28 C -0.078 4.078 29 C -0.055 4.055 30 H 0.149 0.851 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.150 0.850 45 H 0.057 0.943 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.291 -8.048 -4.511 26.921 hybrid contribution 1.096 0.810 -0.948 1.660 sum -24.195 -7.238 -5.460 25.838 Atomic orbital electron populations 1.23570 0.74661 1.05774 1.02591 1.86509 1.25052 1.32582 1.83462 1.23684 0.91905 0.81289 0.71173 1.90669 1.67771 1.37227 1.46522 1.20909 0.86295 0.98839 1.02732 0.84682 1.21408 0.93983 1.02335 0.95861 1.21624 0.93746 0.91339 0.87751 0.91114 1.86417 1.28643 1.81088 1.42459 1.22913 1.01252 0.95763 0.90925 1.61783 1.07879 1.18231 1.37663 1.20810 0.90510 0.87723 1.01915 1.19473 0.95104 1.08180 0.92597 1.20832 0.92475 0.95406 0.97544 1.20466 0.93572 1.11626 0.96794 1.19950 0.84407 0.94162 0.95017 1.83946 1.13024 1.81805 1.35215 1.21756 0.88420 1.52832 0.85759 0.88096 1.26574 0.97519 0.95956 1.02083 1.70180 1.12322 1.48757 1.24637 0.84670 0.76289 0.79907 0.75509 1.18253 1.19798 1.18065 1.21192 0.96822 1.12026 0.96016 1.20881 0.91332 0.96631 0.99002 1.21882 0.87171 0.93805 1.02633 0.85097 0.91741 0.92014 0.88917 0.91592 0.75376 0.94282 0.90242 0.93508 0.88441 0.83584 0.87105 0.91907 0.86508 0.84994 0.94347 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.76 10.50 -51.40 -0.54 -6.30 16 3 C 0.48 8.80 7.26 71.23 0.52 9.32 16 4 O -0.53 -12.57 15.73 21.98 0.35 -12.23 16 5 C -0.07 -1.11 2.79 -11.49 -0.03 -1.14 16 6 H 0.14 1.88 8.14 -2.38 -0.02 1.86 16 7 C -0.10 -1.64 4.87 30.67 0.15 -1.50 16 8 C 0.11 2.14 3.63 30.64 0.11 2.25 16 9 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 10 O -0.58 -11.27 13.32 -148.98 -1.98 -13.25 16 11 C 0.02 0.41 4.78 86.33 0.41 0.82 16 12 N -0.53 -10.78 4.65 -900.92 -4.19 -14.97 16 13 C 0.12 2.52 5.12 85.56 0.44 2.96 16 14 C -0.15 -4.40 4.89 -19.84 -0.10 -4.49 16 15 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 16 C -0.21 -8.49 9.99 22.39 0.22 -8.26 16 17 C 0.12 5.59 6.65 22.58 0.15 5.74 16 18 O -0.23 -13.88 9.76 -22.77 -0.22 -14.10 16 19 C -0.41 -23.64 9.49 67.92 0.64 -23.00 16 20 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 22 N -0.92 -56.24 13.67 21.61 0.30 -55.95 16 23 Si 1.02 42.36 29.55 68.60 2.03 44.39 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 27 C -0.24 -10.06 9.17 22.39 0.21 -9.86 16 28 C -0.06 -1.93 7.86 22.25 0.17 -1.75 16 29 C 0.07 1.32 4.04 86.32 0.35 1.67 16 30 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.40 5.49 9.08 -74.06 -0.67 4.82 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.87 5.75 -2.39 -0.01 1.86 16 38 H 0.05 0.96 8.07 -2.39 -0.02 0.94 16 39 H 0.10 1.82 7.93 -2.39 -0.02 1.80 16 40 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 41 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 43 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 44 H 0.13 3.48 7.95 -2.91 -0.02 3.46 16 45 H 0.04 0.76 8.08 -2.39 -0.02 0.74 16 46 H 0.09 1.62 7.99 -2.39 -0.02 1.60 16 Total: -1.00 -73.78 380.01 1.19 -72.59 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.33 Total: 27.64 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 5.12 Total: -27.83 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -3.89 Total: -70.91 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -2.40 Total: -45.88 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -73.78 1.19 -72.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830886773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.986 kcal (2) G-P(sol) polarization free energy of solvation -73.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds