Wall clock time and date at job start Tue Mar 31 2020 19:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34232 * 116.99967 * 2 1 4 4 O 1.20829 * 119.99940 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00466 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.49997 * 59.91728 * 5 3 2 7 7 C 1.53116 * 109.50191 * 299.80334 * 5 3 2 8 8 C 1.53122 * 109.16185 * 182.40158 * 7 5 3 9 9 H 1.08995 * 109.50449 * 177.59138 * 8 7 5 10 10 O 1.42905 * 109.53535 * 297.69715 * 8 7 5 11 11 C 1.53041 * 109.27663 * 57.65107 * 8 7 5 12 12 N 1.46843 * 109.52428 * 300.82460 * 11 8 7 13 13 C 1.46905 * 110.99820 * 185.83738 * 12 11 8 14 14 C 1.50701 * 109.47054 * 65.79354 * 13 12 11 15 15 C 1.38308 * 119.92444 * 269.72522 * 14 13 12 16 16 C 1.38106 * 120.06307 * 179.72674 * 15 14 13 17 17 C 1.38876 * 119.92958 * 0.54308 * 16 15 14 18 18 O 1.35750 * 120.06582 * 179.74836 * 17 16 15 19 19 C 1.34831 * 117.00083 * 174.44098 * 18 17 16 20 20 H 1.08001 * 119.99686 * 5.06288 * 19 18 17 21 21 C 1.38655 * 120.00066 * 185.05139 * 19 18 17 22 22 N 1.31554 * 119.99854 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99789 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47016 * 90.00481 * 23 21 19 25 25 H 1.48505 * 109.46988 * 210.00702 * 23 21 19 26 26 H 1.48505 * 109.47248 * 330.00364 * 23 21 19 27 27 C 1.38874 * 119.86486 * 359.73139 * 17 16 15 28 28 C 1.38096 * 119.93209 * 359.97438 * 27 17 16 29 29 C 1.46846 * 111.20307 * 61.74044 * 12 11 8 30 30 H 1.09003 * 109.47310 * 299.99956 * 1 2 3 31 31 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47551 * 60.00410 * 1 2 3 33 33 H 1.08997 * 109.52094 * 302.30639 * 7 5 3 34 34 H 1.08995 * 109.52353 * 62.49869 * 7 5 3 35 35 H 0.96696 * 114.00038 * 179.81816 * 10 8 7 36 36 H 1.08999 * 109.46253 * 180.80679 * 11 8 7 37 37 H 1.09006 * 109.45214 * 60.83105 * 11 8 7 38 38 H 1.09001 * 109.46928 * 185.78955 * 13 12 11 39 39 H 1.08996 * 109.47286 * 305.78921 * 13 12 11 40 40 H 1.07994 * 119.96420 * 359.97438 * 15 14 13 41 41 H 1.08000 * 120.03195 * 180.27116 * 16 15 14 42 42 H 0.97002 * 119.99667 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.03631 * 179.97438 * 27 17 16 44 44 H 1.08003 * 119.96985 * 180.02562 * 28 27 17 45 45 H 1.08995 * 109.46964 * 178.24115 * 29 12 11 46 46 H 1.09002 * 109.45912 * 58.27191 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9569 0.7796 -0.8883 7 6 4.1138 0.5857 1.2534 8 6 5.6387 0.7227 1.2765 9 1 6.0308 0.2711 2.1877 10 8 6.1953 0.0615 0.1385 11 6 6.0133 2.2061 1.2393 12 7 5.4671 2.8198 0.0222 13 6 5.9230 4.2094 -0.1168 14 6 7.4138 4.2294 -0.3366 15 6 8.2700 4.3057 0.7469 16 6 9.6368 4.3186 0.5490 17 6 10.1508 4.2661 -0.7400 18 8 11.4937 4.2837 -0.9379 19 6 11.9283 4.1142 -2.2030 20 1 11.2181 4.0547 -3.0145 21 6 13.2869 4.0165 -2.4621 22 7 14.1519 4.0886 -1.4735 23 14 13.8889 3.7824 -4.2148 24 1 14.1176 5.1094 -4.8410 25 1 15.1601 3.0148 -4.2032 26 1 12.8677 3.0369 -4.9937 27 6 9.2883 4.1952 -1.8261 28 6 7.9227 4.1766 -1.6215 29 6 4.0009 2.7424 0.0003 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 -0.8899 33 1 3.6923 1.0561 2.1416 34 1 3.8432 -0.4700 1.2359 35 1 7.1596 0.1108 0.0876 36 1 7.0986 2.3068 1.2413 37 1 5.6005 2.7068 2.1152 38 1 5.4240 4.6720 -0.9683 39 1 5.6820 4.7633 0.7904 40 1 7.8694 4.3513 1.7487 41 1 10.3050 4.3738 1.3957 42 1 15.1023 4.0199 -1.6548 43 1 9.6850 4.1547 -2.8298 44 1 7.2513 4.1211 -2.4657 45 1 3.6246 3.2325 -0.8975 46 1 3.5977 3.2407 0.8820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830886774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:10 Heat of formation + Delta-G solvation = -130.370278 kcal Electronic energy + Delta-G solvation = -28871.475817 eV Core-core repulsion = 24727.076053 eV Total energy + Delta-G solvation = -4144.399765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00648 -39.54715 -38.79385 -36.85188 -36.78959 -35.56038 -33.54396 -32.26578 -30.44675 -30.05911 -29.68123 -28.03863 -26.13944 -25.08221 -24.32644 -22.82699 -22.00391 -21.30567 -20.27240 -19.92507 -17.99875 -17.87800 -17.26503 -16.95144 -16.84588 -16.52319 -15.69495 -15.19139 -14.94710 -14.65790 -14.50291 -14.39481 -13.96618 -13.82341 -13.69784 -13.51974 -13.38889 -13.11571 -13.09696 -12.71087 -12.60482 -12.45254 -11.98339 -11.73819 -11.59338 -11.40978 -11.30102 -11.15985 -11.12757 -11.02977 -10.77054 -10.71702 -10.59635 -10.44406 -10.31594 -9.85396 -9.33523 -8.84308 -8.28306 -8.16493 -7.19004 -6.46178 -4.04820 1.92747 2.17537 2.24101 2.44162 3.12413 3.13827 3.18515 3.85659 3.96307 4.19256 4.31421 4.52850 4.63601 4.67580 4.77204 4.83838 4.84864 4.91392 5.08018 5.13429 5.19695 5.24098 5.29934 5.33499 5.35085 5.51550 5.55624 5.57895 5.73137 5.74037 5.83144 5.85797 5.90055 5.95236 6.10501 6.20179 6.41365 6.68263 6.88211 7.00207 7.02134 7.09977 7.25321 7.40989 7.44006 7.46878 7.72007 7.81381 7.99098 8.99768 9.69505 10.71755 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.002262 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.777152 B =12373.561935 C =12542.479373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.072 4.072 6 H 0.128 0.872 7 C -0.104 4.104 8 C 0.113 3.887 9 H 0.063 0.937 10 O -0.554 6.554 11 C 0.015 3.985 12 N -0.520 5.520 13 C 0.115 3.885 14 C -0.178 4.178 15 C -0.070 4.070 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 C -0.234 4.234 28 C -0.047 4.047 29 C 0.073 3.927 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.384 0.616 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.979 -7.364 5.159 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.397 6.397 5 C -0.091 4.091 6 H 0.145 0.855 7 C -0.141 4.141 8 C 0.053 3.947 9 H 0.081 0.919 10 O -0.360 6.360 11 C -0.113 4.113 12 N -0.244 5.244 13 C -0.012 4.012 14 C -0.180 4.180 15 C -0.089 4.089 16 C -0.214 4.214 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.191 1.191 27 C -0.253 4.253 28 C -0.066 4.066 29 C -0.055 4.055 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.232 0.768 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.215 -7.432 4.823 23.916 hybrid contribution 0.329 0.573 -0.099 0.668 sum -21.886 -6.859 4.724 23.417 Atomic orbital electron populations 1.23268 0.76480 1.03695 1.02515 1.86533 1.23289 1.33484 1.83982 1.23894 0.92062 0.81230 0.71800 1.90666 1.67305 1.36365 1.45325 1.20991 0.85730 0.99250 1.03142 0.85470 1.21572 0.94531 1.01949 0.96082 1.21704 0.92833 0.91005 0.89131 0.91934 1.86433 1.26334 1.76967 1.46235 1.22977 1.02270 0.95103 0.90974 1.61812 1.06782 1.18323 1.37513 1.20795 0.93154 0.87062 1.00149 1.19024 0.93119 1.12365 0.93472 1.20468 0.92355 0.99030 0.97077 1.20155 0.94649 1.11721 0.94833 1.19389 0.84949 0.92282 0.93211 1.83974 1.15677 1.77621 1.30872 1.21328 0.91922 1.51657 0.81799 0.89030 1.25290 0.94787 0.96580 0.99883 1.70038 1.02388 1.45954 1.31389 0.85716 0.78669 0.78713 0.80376 1.19903 1.20264 1.19142 1.21162 0.93235 1.11576 0.99374 1.20560 0.94210 0.96154 0.95632 1.21856 0.88418 0.93122 1.02140 0.91977 0.88070 0.91878 0.90609 0.89684 0.76847 0.88724 0.94431 0.90636 0.94897 0.87627 0.86706 0.92032 0.85630 0.87496 0.89852 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.50 10.50 -39.26 -0.41 -3.91 16 3 C 0.47 5.18 7.26 36.00 0.26 5.44 16 4 O -0.51 -6.79 15.73 -18.75 -0.30 -7.09 16 5 C -0.07 -0.75 2.64 -91.69 -0.24 -1.00 16 6 H 0.13 1.45 7.80 -51.93 -0.41 1.04 16 7 C -0.10 -0.95 4.95 -26.61 -0.13 -1.09 16 8 C 0.11 1.11 3.80 -26.65 -0.10 1.01 16 9 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 10 O -0.55 -6.35 12.66 -35.23 -0.45 -6.79 16 11 C 0.02 0.17 4.82 -3.83 -0.02 0.15 16 12 N -0.52 -6.42 4.53 -236.11 -1.07 -7.49 16 13 C 0.11 1.52 5.12 -4.97 -0.03 1.49 16 14 C -0.18 -2.87 4.88 -104.57 -0.51 -3.38 16 15 C -0.07 -1.17 7.87 -39.60 -0.31 -1.49 16 16 C -0.19 -3.92 9.99 -39.39 -0.39 -4.31 16 17 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 18 O -0.18 -4.99 9.76 0.05 0.00 -4.99 16 19 C -0.39 -10.77 9.49 30.89 0.29 -10.47 16 20 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.03 13.67 55.48 0.76 -24.28 16 23 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.23 -4.95 9.17 -39.40 -0.36 -5.31 16 28 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 29 C 0.07 0.83 4.04 -3.83 -0.02 0.81 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.38 3.74 9.08 45.56 0.41 4.16 16 36 H 0.09 1.18 5.77 -51.93 -0.30 0.88 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.96 7.93 -51.93 -0.41 0.54 16 39 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 40 H 0.11 1.48 7.97 -52.49 -0.42 1.06 16 41 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.08 0.98 7.99 -51.93 -0.42 0.56 16 46 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -32.09 379.06 -7.89 -39.98 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.88 Total: 7.25 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.23 Total: -13.71 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: -0.31 Total: -31.77 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.15 Total: -22.78 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.09 -7.89 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830886774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.389 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds