Wall clock time and date at job start Tue Mar 31 2020 19:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34232 * 116.99967 * 2 1 4 4 O 1.20829 * 119.99940 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00466 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.49997 * 59.91728 * 5 3 2 7 7 C 1.53116 * 109.50191 * 299.80334 * 5 3 2 8 8 C 1.53122 * 109.16185 * 182.40158 * 7 5 3 9 9 H 1.08995 * 109.50449 * 177.59138 * 8 7 5 10 10 O 1.42905 * 109.53535 * 297.69715 * 8 7 5 11 11 C 1.53041 * 109.27663 * 57.65107 * 8 7 5 12 12 N 1.46843 * 109.52428 * 300.82460 * 11 8 7 13 13 C 1.46905 * 110.99820 * 185.83738 * 12 11 8 14 14 C 1.50701 * 109.47054 * 65.79354 * 13 12 11 15 15 C 1.38308 * 119.92444 * 269.72522 * 14 13 12 16 16 C 1.38106 * 120.06307 * 179.72674 * 15 14 13 17 17 C 1.38876 * 119.92958 * 0.54308 * 16 15 14 18 18 O 1.35750 * 120.06582 * 179.74836 * 17 16 15 19 19 C 1.34831 * 117.00083 * 174.44098 * 18 17 16 20 20 H 1.08001 * 119.99686 * 5.06288 * 19 18 17 21 21 C 1.38655 * 120.00066 * 185.05139 * 19 18 17 22 22 N 1.31554 * 119.99854 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99789 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47016 * 90.00481 * 23 21 19 25 25 H 1.48505 * 109.46988 * 210.00702 * 23 21 19 26 26 H 1.48505 * 109.47248 * 330.00364 * 23 21 19 27 27 C 1.38874 * 119.86486 * 359.73139 * 17 16 15 28 28 C 1.38096 * 119.93209 * 359.97438 * 27 17 16 29 29 C 1.46846 * 111.20307 * 61.74044 * 12 11 8 30 30 H 1.09003 * 109.47310 * 299.99956 * 1 2 3 31 31 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47551 * 60.00410 * 1 2 3 33 33 H 1.08997 * 109.52094 * 302.30639 * 7 5 3 34 34 H 1.08995 * 109.52353 * 62.49869 * 7 5 3 35 35 H 0.96696 * 114.00038 * 179.81816 * 10 8 7 36 36 H 1.08999 * 109.46253 * 180.80679 * 11 8 7 37 37 H 1.09006 * 109.45214 * 60.83105 * 11 8 7 38 38 H 1.09001 * 109.46928 * 185.78955 * 13 12 11 39 39 H 1.08996 * 109.47286 * 305.78921 * 13 12 11 40 40 H 1.07994 * 119.96420 * 359.97438 * 15 14 13 41 41 H 1.08000 * 120.03195 * 180.27116 * 16 15 14 42 42 H 0.97002 * 119.99667 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.03631 * 179.97438 * 27 17 16 44 44 H 1.08003 * 119.96985 * 180.02562 * 28 27 17 45 45 H 1.08995 * 109.46964 * 178.24115 * 29 12 11 46 46 H 1.09002 * 109.45912 * 58.27191 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9569 0.7796 -0.8883 7 6 4.1138 0.5857 1.2534 8 6 5.6387 0.7227 1.2765 9 1 6.0308 0.2711 2.1877 10 8 6.1953 0.0615 0.1385 11 6 6.0133 2.2061 1.2393 12 7 5.4671 2.8198 0.0222 13 6 5.9230 4.2094 -0.1168 14 6 7.4138 4.2294 -0.3366 15 6 8.2700 4.3057 0.7469 16 6 9.6368 4.3186 0.5490 17 6 10.1508 4.2661 -0.7400 18 8 11.4937 4.2837 -0.9379 19 6 11.9283 4.1142 -2.2030 20 1 11.2181 4.0547 -3.0145 21 6 13.2869 4.0165 -2.4621 22 7 14.1519 4.0886 -1.4735 23 14 13.8889 3.7824 -4.2148 24 1 14.1176 5.1094 -4.8410 25 1 15.1601 3.0148 -4.2032 26 1 12.8677 3.0369 -4.9937 27 6 9.2883 4.1952 -1.8261 28 6 7.9227 4.1766 -1.6215 29 6 4.0009 2.7424 0.0003 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 -0.8899 33 1 3.6923 1.0561 2.1416 34 1 3.8432 -0.4700 1.2359 35 1 7.1596 0.1108 0.0876 36 1 7.0986 2.3068 1.2413 37 1 5.6005 2.7068 2.1152 38 1 5.4240 4.6720 -0.9683 39 1 5.6820 4.7633 0.7904 40 1 7.8694 4.3513 1.7487 41 1 10.3050 4.3738 1.3957 42 1 15.1023 4.0199 -1.6548 43 1 9.6850 4.1547 -2.8298 44 1 7.2513 4.1211 -2.4657 45 1 3.6246 3.2325 -0.8975 46 1 3.5977 3.2407 0.8820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830886774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:09 Heat of formation + Delta-G solvation = -153.119320 kcal Electronic energy + Delta-G solvation = -28872.462290 eV Core-core repulsion = 24727.076053 eV Total energy + Delta-G solvation = -4145.386237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84460 -40.87283 -40.05174 -38.35531 -37.61246 -36.59180 -34.62692 -34.10847 -31.83807 -31.16776 -30.96276 -28.67129 -27.70570 -26.57991 -25.23520 -23.84077 -23.56067 -22.32962 -21.59501 -20.74886 -19.80688 -18.83370 -18.66200 -18.06737 -17.67648 -17.34937 -16.57644 -16.47616 -16.37634 -16.14284 -15.55553 -15.52674 -15.44071 -15.15054 -14.91530 -14.56268 -14.42292 -14.31409 -14.16510 -13.94718 -13.87274 -13.55225 -13.07248 -12.96812 -12.92972 -12.56059 -12.42979 -12.36177 -12.30082 -12.12394 -12.08508 -11.98001 -11.83541 -11.70478 -11.21396 -11.13475 -10.77991 -10.66895 -9.71956 -9.24409 -8.85042 -8.45076 -6.12532 0.63749 0.70757 1.08667 1.36589 1.45025 1.53607 1.66944 2.19379 2.75024 3.01987 3.27705 3.43676 3.54014 3.55562 3.76032 3.87069 3.93280 4.09539 4.11920 4.20148 4.24436 4.30571 4.32510 4.32950 4.45276 4.57149 4.63032 4.63462 4.69787 4.71155 4.78050 4.81481 4.84997 4.94023 5.06584 5.11819 5.15114 5.19076 5.32812 5.34665 5.60063 5.75829 5.84762 6.05713 6.07590 6.14175 6.27089 6.65914 6.95194 7.00222 7.81533 8.77995 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.002262 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.777152 B =12373.561935 C =12542.479373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.067 4.067 6 H 0.118 0.882 7 C -0.100 4.100 8 C 0.113 3.887 9 H 0.083 0.917 10 O -0.570 6.570 11 C 0.013 3.987 12 N -0.530 5.530 13 C 0.116 3.884 14 C -0.149 4.149 15 C -0.057 4.057 16 C -0.202 4.202 17 C 0.115 3.885 18 O -0.233 6.233 19 C -0.410 4.410 20 H 0.100 0.900 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.016 2.984 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.242 4.242 28 C -0.048 4.048 29 C 0.078 3.922 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.388 0.612 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.272 0.728 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.078 0.922 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.145 -8.116 5.376 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.087 4.087 6 H 0.136 0.864 7 C -0.138 4.138 8 C 0.053 3.947 9 H 0.100 0.900 10 O -0.377 6.377 11 C -0.115 4.115 12 N -0.254 5.254 13 C -0.011 4.011 14 C -0.150 4.150 15 C -0.075 4.075 16 C -0.221 4.221 17 C 0.065 3.935 18 O -0.140 6.140 19 C -0.486 4.486 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.836 3.164 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.178 1.178 27 C -0.261 4.261 28 C -0.067 4.067 29 C -0.050 4.050 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.237 0.763 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.161 0.839 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.150 0.850 45 H 0.096 0.904 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.450 -8.198 5.054 27.211 hybrid contribution 0.895 0.771 -0.010 1.181 sum -24.554 -7.428 5.044 26.144 Atomic orbital electron populations 1.23561 0.74779 1.05723 1.02558 1.86521 1.24984 1.32717 1.83493 1.23931 0.92183 0.81195 0.71044 1.90657 1.67890 1.37213 1.46732 1.20911 0.85517 0.98763 1.03486 0.86446 1.21596 0.94009 1.02276 0.95891 1.21827 0.93203 0.90192 0.89445 0.89959 1.86419 1.26896 1.77262 1.47157 1.23023 1.01358 0.96077 0.91005 1.61724 1.07603 1.17526 1.38580 1.20797 0.90493 0.88188 1.01606 1.19456 0.95144 1.07884 0.92477 1.20819 0.90640 0.96882 0.99165 1.20401 0.96381 1.11693 0.93638 1.19930 0.84095 0.94278 0.95211 1.83938 1.18073 1.80795 1.31155 1.21779 0.92678 1.51848 0.82331 0.88256 1.26546 0.94638 0.96134 1.04751 1.70180 1.02726 1.48888 1.34070 0.84614 0.78246 0.79077 0.74471 1.18919 1.19609 1.17754 1.21217 0.94582 1.11996 0.98340 1.20846 0.92958 0.95363 0.97484 1.21787 0.87470 0.93680 1.02037 0.91751 0.85128 0.92067 0.89183 0.89184 0.76330 0.90098 0.92885 0.89594 0.93121 0.83885 0.86974 0.91915 0.86773 0.85033 0.90367 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -6.30 10.50 -51.44 -0.54 -6.84 16 3 C 0.47 9.50 7.26 71.24 0.52 10.02 16 4 O -0.54 -13.32 15.73 21.95 0.35 -12.97 16 5 C -0.07 -1.25 2.64 -11.49 -0.03 -1.28 16 6 H 0.12 2.46 7.80 -2.39 -0.02 2.44 16 7 C -0.10 -1.54 4.95 30.67 0.15 -1.38 16 8 C 0.11 1.88 3.80 30.65 0.12 2.00 16 9 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 10 O -0.57 -11.92 12.66 -148.98 -1.89 -13.80 16 11 C 0.01 0.25 4.82 86.33 0.42 0.67 16 12 N -0.53 -11.32 4.53 -900.92 -4.08 -15.40 16 13 C 0.12 2.60 5.12 85.56 0.44 3.04 16 14 C -0.15 -4.35 4.88 -19.83 -0.10 -4.45 16 15 C -0.06 -1.75 7.87 22.26 0.18 -1.57 16 16 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 17 C 0.12 5.61 6.65 22.58 0.15 5.76 16 18 O -0.23 -13.88 9.76 -22.75 -0.22 -14.10 16 19 C -0.41 -23.79 9.49 67.92 0.64 -23.14 16 20 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 21 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 22 N -0.92 -56.28 13.67 21.61 0.30 -55.99 16 23 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 27 C -0.24 -10.39 9.17 22.39 0.21 -10.18 16 28 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 29 C 0.08 1.55 4.04 86.33 0.35 1.90 16 30 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 31 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.39 7.04 9.08 -74.06 -0.67 6.37 16 36 H 0.08 1.76 5.77 -2.39 -0.01 1.74 16 37 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.09 1.82 7.93 -2.39 -0.02 1.80 16 39 H 0.05 1.01 8.06 -2.39 -0.02 0.99 16 40 H 0.14 3.40 7.97 -2.91 -0.02 3.37 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.11 5.07 5.64 -2.91 -0.02 5.06 16 44 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 45 H 0.08 1.64 7.99 -2.39 -0.02 1.62 16 46 H 0.04 0.83 8.08 -2.39 -0.02 0.81 16 Total: -1.00 -73.79 379.06 1.41 -72.38 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.33 Total: 29.16 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 5.14 Total: -27.36 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -3.79 Total: -71.39 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -2.30 Total: -47.72 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.79 1.41 -72.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830886774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.739 kcal (2) G-P(sol) polarization free energy of solvation -73.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds