Wall clock time and date at job start Tue Mar 31 2020 19:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00239 * 2 1 4 4 C 1.53000 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.87013 * 54.56563 * 4 3 2 6 6 C 1.54326 * 109.88253 * 175.73710 * 4 3 2 7 7 C 1.55161 * 102.94109 * 141.61264 * 6 4 3 8 8 H 1.08999 * 111.00281 * 82.57421 * 7 6 4 9 9 O 1.42893 * 111.00173 * 206.38871 * 7 6 4 10 10 C 1.55129 * 101.48272 * 324.33491 * 7 6 4 11 11 N 1.47016 * 109.88489 * 293.54795 * 4 3 2 12 12 C 1.34775 * 125.64951 * 61.60892 * 11 4 3 13 13 O 1.21284 * 119.99992 * 359.97438 * 12 11 4 14 14 C 1.50698 * 120.00176 * 179.97438 * 12 11 4 15 15 C 1.50706 * 109.46931 * 179.97438 * 14 12 11 16 16 C 1.38299 * 119.93039 * 90.00305 * 15 14 12 17 17 C 1.38100 * 120.06840 * 179.97438 * 16 15 14 18 18 C 1.38882 * 119.93309 * 359.97438 * 17 16 15 19 19 O 1.35741 * 120.06963 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00506 * 5.54159 * 19 18 17 21 21 H 1.07999 * 119.99644 * 354.93489 * 20 19 18 22 22 C 1.38651 * 120.00703 * 174.94177 * 20 19 18 23 23 N 1.31557 * 119.99696 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00330 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47090 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47183 * 299.99825 * 24 22 20 27 27 H 1.48496 * 109.46942 * 59.99594 * 24 22 20 28 28 C 1.38882 * 119.86015 * 0.25490 * 18 17 16 29 29 C 1.38101 * 119.92899 * 359.49348 * 28 18 17 30 30 H 1.08997 * 109.47015 * 300.00023 * 1 2 3 31 31 H 1.08997 * 109.47271 * 59.99704 * 1 2 3 32 32 H 1.09000 * 109.47425 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46565 * 60.00058 * 3 2 1 34 34 H 1.08993 * 109.47009 * 300.00128 * 3 2 1 35 35 H 1.08993 * 110.72071 * 259.97678 * 6 4 3 36 36 H 1.09003 * 110.72009 * 23.25104 * 6 4 3 37 37 H 0.96704 * 114.00301 * 180.02562 * 9 7 6 38 38 H 1.09001 * 110.49669 * 278.44742 * 10 7 6 39 39 H 1.08998 * 110.33918 * 156.06120 * 10 7 6 40 40 H 1.09004 * 109.47313 * 60.00063 * 14 12 11 41 41 H 1.08995 * 109.47405 * 299.99330 * 14 12 11 42 42 H 1.07995 * 119.96602 * 359.95465 * 16 15 14 43 43 H 1.08004 * 120.03340 * 180.02562 * 17 16 15 44 44 H 0.97004 * 120.00173 * 0.02562 * 23 22 20 45 45 H 1.07999 * 120.03676 * 179.72206 * 28 18 17 46 46 H 1.07997 * 119.96818 * 180.27655 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8582 0.5627 -0.8344 6 6 4.1731 2.5859 -0.1072 7 6 5.4011 2.4823 0.8354 8 1 6.2448 2.0146 0.3279 9 8 5.7630 3.7662 1.3480 10 6 4.8492 1.5707 1.9627 11 7 3.9898 0.5947 1.2683 12 6 3.6691 -0.6328 1.7230 13 8 2.9458 -1.3525 1.0675 14 6 4.2094 -1.1112 3.0460 15 6 3.7044 -2.5043 3.3206 16 6 4.4314 -3.5992 2.8899 17 6 3.9717 -4.8771 3.1404 18 6 2.7782 -5.0622 3.8261 19 8 2.3234 -6.3170 4.0734 20 6 3.1316 -7.3400 3.7294 21 1 4.0555 -7.1454 3.2051 22 6 2.7766 -8.6417 4.0486 23 7 1.6514 -8.8787 4.6877 24 14 3.8960 -10.0589 3.5714 25 1 3.2946 -11.3389 4.0242 26 1 4.0615 -10.0838 2.0959 27 1 5.2222 -9.8805 4.2152 28 6 2.0480 -3.9606 4.2531 29 6 2.5158 -2.6853 4.0041 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 4.4885 2.7883 -1.1307 36 1 3.4815 3.3522 0.2431 37 1 6.5259 3.7518 1.9420 38 1 4.2635 2.1542 2.6730 39 1 5.6669 1.0611 2.4723 40 1 3.8755 -0.4413 3.8385 41 1 5.2988 -1.1194 3.0121 42 1 5.3595 -3.4546 2.3568 43 1 4.5401 -5.7317 2.8042 44 1 1.0699 -8.1428 4.9352 45 1 1.1173 -4.1013 4.7827 46 1 1.9507 -1.8284 4.3398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846453530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:44 Heat of formation + Delta-G solvation = -124.121055 kcal Electronic energy + Delta-G solvation = -28994.150345 eV Core-core repulsion = 24850.021567 eV Total energy + Delta-G solvation = -4144.128778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48176 -39.10439 -38.07695 -37.58157 -36.51423 -35.70233 -32.57162 -32.01677 -30.72587 -30.14046 -29.97827 -26.85064 -26.54727 -25.11933 -24.72705 -22.74006 -21.88365 -21.63128 -20.55559 -19.09199 -18.30067 -18.00906 -17.21405 -16.79709 -16.46072 -16.35760 -15.53839 -15.36463 -15.08544 -14.71285 -14.42747 -14.23105 -14.12240 -13.91070 -13.63922 -13.52764 -13.35397 -13.08024 -13.02313 -12.90448 -12.53912 -12.46876 -11.94569 -11.76629 -11.58312 -11.23472 -11.20727 -11.13867 -10.99765 -10.80606 -10.69504 -10.63776 -10.25951 -10.22149 -9.63027 -9.44552 -9.33978 -8.70282 -8.68044 -8.13913 -7.16518 -6.71599 -4.00102 2.25400 2.25943 2.84767 2.92402 3.27061 3.32301 3.46066 3.48744 3.95979 4.01289 4.16505 4.17381 4.50923 4.57807 4.73241 4.91787 4.95283 5.05440 5.11408 5.14905 5.16934 5.18839 5.22905 5.31368 5.32248 5.34451 5.36810 5.41005 5.47434 5.68116 5.74193 5.76428 5.78332 5.85697 6.20048 6.23683 6.42603 6.69748 6.90802 7.07316 7.12340 7.21434 7.29446 7.39502 7.51695 7.63204 7.81192 8.46081 8.47310 8.98304 9.67947 10.72585 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.002460 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.195042 B =11381.069778 C =12043.946424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.348 6.348 3 C 0.049 3.951 4 C 0.142 3.858 5 H 0.085 0.915 6 C -0.117 4.117 7 C 0.091 3.909 8 H 0.078 0.922 9 O -0.557 6.557 10 C 0.070 3.930 11 N -0.624 5.624 12 C 0.518 3.482 13 O -0.474 6.474 14 C -0.074 4.074 15 C -0.165 4.165 16 C -0.056 4.056 17 C -0.228 4.228 18 C 0.160 3.840 19 O -0.204 6.204 20 C -0.470 4.470 21 H 0.083 0.917 22 C 0.009 3.991 23 N -0.883 5.883 24 Si 1.096 2.904 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.282 1.282 28 C -0.194 4.194 29 C -0.057 4.057 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.383 0.617 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.127 0.873 44 H 0.282 0.718 45 H 0.114 0.886 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 25.947 -7.178 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C -0.029 4.029 4 C 0.038 3.962 5 H 0.103 0.897 6 C -0.155 4.155 7 C 0.032 3.968 8 H 0.096 0.904 9 O -0.362 6.362 10 C -0.054 4.054 11 N -0.364 5.364 12 C 0.306 3.694 13 O -0.343 6.343 14 C -0.114 4.114 15 C -0.166 4.166 16 C -0.074 4.074 17 C -0.247 4.247 18 C 0.107 3.893 19 O -0.108 6.108 20 C -0.547 4.547 21 H 0.101 0.899 22 C -0.196 4.196 23 N -0.515 5.515 24 Si 0.920 3.080 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.213 4.213 29 C -0.076 4.076 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.231 0.769 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.092 0.908 45 H 0.132 0.868 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.598 23.634 -7.689 25.714 hybrid contribution 0.181 1.970 0.200 1.988 sum 6.779 25.604 -7.489 27.525 Atomic orbital electron populations 1.22702 0.82137 1.02862 0.98814 1.88379 1.18407 1.24715 1.95013 1.22895 0.93334 0.86811 0.99885 1.21472 0.92741 0.93438 0.88533 0.89715 1.22591 0.96548 0.95829 1.00532 1.22964 0.96783 0.83613 0.93486 0.90417 1.86514 1.53619 1.28512 1.67525 1.22999 0.94829 0.91584 0.95974 1.48547 1.51438 1.15255 1.21136 1.20694 0.81242 0.79391 0.88116 1.90839 1.33489 1.52488 1.57495 1.20389 1.01021 0.95812 0.94189 1.18656 0.98347 0.92271 1.07336 1.20509 0.98079 0.91912 0.96945 1.21108 0.99267 0.97317 1.07003 1.19222 0.91862 0.85756 0.92498 1.83660 1.43353 1.10942 1.72866 1.22196 1.05105 0.85867 1.41485 0.89946 1.26522 0.99786 0.97726 0.95575 1.70569 1.10349 1.36567 1.34057 0.83110 0.73961 0.74511 0.76427 1.19814 1.20752 1.20778 1.20120 1.02086 0.90654 1.08470 1.20365 0.94551 0.95434 0.97228 0.94792 0.94870 0.89523 0.93558 0.92979 0.89139 0.89355 0.76870 0.90762 0.90209 0.89449 0.89425 0.87797 0.85528 0.90839 0.86799 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.35 -5.18 7.37 -59.35 -0.44 -5.62 16 3 C 0.05 0.53 5.36 37.16 0.20 0.73 16 4 C 0.14 1.41 3.30 -66.95 -0.22 1.19 16 5 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.12 -0.79 6.21 -24.89 -0.15 -0.94 16 7 C 0.09 0.55 4.44 -24.46 -0.11 0.44 16 8 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 9 O -0.56 -3.17 13.47 -35.23 -0.47 -3.64 16 10 C 0.07 0.50 6.44 -2.41 -0.02 0.48 16 11 N -0.62 -6.86 3.06 -162.89 -0.50 -7.36 16 12 C 0.52 7.66 7.58 -10.99 -0.08 7.58 16 13 O -0.47 -9.24 13.31 -18.56 -0.25 -9.49 16 14 C -0.07 -0.99 4.83 -29.03 -0.14 -1.13 16 15 C -0.16 -2.98 4.38 -104.57 -0.46 -3.44 16 16 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 17 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 18 C 0.16 4.07 6.65 -39.10 -0.26 3.81 16 19 O -0.20 -5.98 9.16 0.07 0.00 -5.98 16 20 C -0.47 -13.70 9.49 30.88 0.29 -13.41 16 21 H 0.08 2.26 5.20 -52.49 -0.27 1.99 16 22 C 0.01 0.26 5.49 -17.52 -0.10 0.16 16 23 N -0.88 -27.04 13.70 55.48 0.76 -26.28 16 24 Si 1.10 24.34 29.92 -169.99 -5.09 19.26 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 28 C -0.19 -4.33 9.99 -39.39 -0.39 -4.73 16 29 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 37 H 0.38 0.57 9.12 45.56 0.42 0.99 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.45 7.48 -51.93 -0.39 0.06 16 40 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.09 0.96 7.80 -51.93 -0.40 0.56 16 42 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.13 2.97 5.64 -52.48 -0.30 2.67 16 44 H 0.28 8.83 7.97 -40.82 -0.33 8.50 16 45 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 46 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -37.22 381.61 -7.66 -44.88 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.97 Total: 4.87 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.45 Total: -16.39 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.26 Total: -33.64 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -1.16 Total: -24.73 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.09 Total: 19.26 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.22 -7.66 -44.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846453530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.243 kcal (2) G-P(sol) polarization free energy of solvation -37.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds