Wall clock time and date at job start Tue Mar 31 2020 19:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99558 * 2 1 4 4 C 1.53006 * 109.47070 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46947 * 64.99872 * 4 3 2 6 6 C 1.37100 * 120.00300 * 264.46461 * 5 4 3 7 7 H 1.07999 * 119.99815 * 140.16858 * 6 5 4 8 8 C 1.38954 * 119.99705 * 320.17348 * 6 5 4 9 9 N 1.31411 * 119.99815 * 340.60569 * 8 6 5 10 10 Si 1.86794 * 119.99971 * 160.60939 * 8 6 5 11 11 H 1.48498 * 109.47165 * 89.99323 * 10 8 6 12 12 H 1.48496 * 109.47461 * 209.99604 * 10 8 6 13 13 H 1.48506 * 109.46916 * 329.99681 * 10 8 6 14 14 C 1.34779 * 119.99573 * 84.46368 * 5 4 3 15 15 O 1.21293 * 120.00483 * 5.29239 * 14 5 4 16 16 C 1.50707 * 119.99707 * 185.29009 * 14 5 4 17 17 H 1.09000 * 109.55561 * 316.24657 * 16 14 5 18 18 C 1.53261 * 109.55663 * 76.46040 * 16 14 5 19 19 C 1.53263 * 108.84255 * 174.47090 * 18 16 14 20 20 O 1.43091 * 108.94291 * 305.47240 * 19 18 16 21 21 C 1.42969 * 113.76684 * 57.97178 * 20 19 18 22 22 H 1.08999 * 109.47086 * 61.20708 * 21 20 19 23 23 C 1.50704 * 109.47252 * 181.20179 * 21 20 19 24 24 C 1.38240 * 119.99496 * 119.72480 * 23 21 20 25 25 C 1.38231 * 119.99448 * 180.30842 * 24 23 21 26 26 C 1.38236 * 120.00327 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99951 * 359.97438 * 26 25 24 28 28 C 1.38227 * 119.99933 * 300.00526 * 23 21 20 29 29 O 1.42963 * 109.47275 * 301.20387 * 21 20 19 30 30 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47368 * 299.99707 * 1 2 3 32 32 H 1.08997 * 109.47271 * 59.99739 * 1 2 3 33 33 H 1.08996 * 109.47584 * 60.00348 * 3 2 1 34 34 H 1.08997 * 109.47409 * 299.99540 * 3 2 1 35 35 H 1.08997 * 109.47191 * 305.00511 * 4 3 2 36 36 H 1.08994 * 109.47416 * 185.00103 * 4 3 2 37 37 H 0.97004 * 119.99458 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.57444 * 54.65968 * 18 16 14 39 39 H 1.08999 * 109.68339 * 294.33978 * 18 16 14 40 40 H 1.09001 * 109.55630 * 185.63683 * 19 18 16 41 41 H 1.09000 * 109.64939 * 65.36571 * 19 18 16 42 42 H 1.07996 * 120.00147 * 0.27940 * 24 23 21 43 43 H 1.07999 * 119.99944 * 180.02562 * 25 24 23 44 44 H 1.07999 * 120.00107 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00102 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.00314 * 359.71993 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2062 -0.7859 -1.3049 7 1 3.9052 -1.3520 -2.1740 8 6 4.8272 -1.4263 -0.2394 9 7 5.5264 -0.7300 0.6284 10 14 4.6680 -3.2768 -0.0408 11 1 5.7746 -3.9496 -0.7674 12 1 4.7368 -3.6277 1.4005 13 1 3.3661 -3.7242 -0.5976 14 6 4.1538 1.3216 -2.3535 15 8 4.0434 2.5275 -2.2847 16 6 4.4904 0.6697 -3.6700 17 1 5.2464 -0.0997 -3.5133 18 6 3.2288 0.0356 -4.2659 19 6 3.5570 -0.5002 -5.6638 20 8 4.1159 0.5585 -6.4476 21 6 5.2928 1.1373 -5.8786 22 1 6.0681 0.3757 -5.7947 23 6 5.7809 2.2555 -6.7632 24 6 5.8673 3.5425 -6.2659 25 6 6.3089 4.5693 -7.0792 26 6 6.6645 4.3092 -8.3894 27 6 6.5791 3.0220 -8.8863 28 6 6.1365 1.9953 -8.0733 29 8 4.9900 1.6540 -4.5805 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8514 0.5683 0.8408 36 1 3.9784 2.1766 0.0889 37 1 5.9601 -1.1771 1.3720 38 1 2.4419 0.7864 -4.3379 39 1 2.8943 -0.7840 -3.6299 40 1 2.6456 -0.8637 -6.1385 41 1 4.2770 -1.3147 -5.5844 42 1 5.5894 3.7457 -5.2423 43 1 6.3768 5.5747 -6.6907 44 1 7.0099 5.1114 -9.0247 45 1 6.8573 2.8187 -9.9098 46 1 6.0690 0.9899 -8.4617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848215106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:31 Heat of formation + Delta-G solvation = -130.760378 kcal Electronic energy + Delta-G solvation = -30144.435320 eV Core-core repulsion = 26000.018639 eV Total energy + Delta-G solvation = -4144.416681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13227 -38.91689 -38.14719 -36.95128 -35.33432 -34.59875 -32.93175 -31.64754 -30.83592 -30.62583 -29.26611 -26.37504 -25.73010 -25.40851 -24.62709 -22.46300 -22.18377 -21.42565 -20.72315 -19.17327 -17.68938 -17.10616 -16.64970 -16.19865 -15.81775 -15.61543 -15.49804 -15.37076 -14.95713 -14.69257 -14.44703 -14.35945 -14.25044 -13.93827 -13.67742 -13.30037 -13.12880 -12.82694 -12.66851 -12.51978 -12.05266 -11.63701 -11.52425 -11.29435 -11.22234 -11.19766 -11.07021 -11.01452 -10.92000 -10.75455 -10.53515 -10.39683 -10.05970 -9.87784 -9.38004 -9.15283 -9.01300 -8.81445 -8.72217 -8.35519 -7.51681 -6.38971 -4.09074 1.34196 1.51406 3.10707 3.22276 3.26832 3.54549 3.64014 3.87014 4.08319 4.14332 4.45896 4.75306 4.95269 5.00278 5.01119 5.08559 5.14431 5.20168 5.25885 5.34362 5.48591 5.61323 5.63195 5.68660 5.72889 5.82105 5.83964 5.93883 5.95465 6.00789 6.01908 6.09898 6.17250 6.27720 6.31745 6.49853 6.50548 6.61252 6.67330 6.71764 7.06428 7.13264 7.20226 7.39338 7.53617 7.76995 7.95868 8.31532 9.06570 9.45405 9.87186 10.64779 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.003461 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.981631 B = 8088.946573 C = 8547.573430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.425 5.425 6 C -0.335 4.335 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.860 5.860 10 Si 0.913 3.087 11 H -0.279 1.279 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.483 3.517 15 O -0.588 6.588 16 C 0.090 3.910 17 H 0.088 0.912 18 C -0.177 4.177 19 C 0.060 3.940 20 O -0.391 6.391 21 C 0.290 3.710 22 H 0.064 0.936 23 C -0.079 4.079 24 C -0.078 4.078 25 C -0.128 4.128 26 C -0.117 4.117 27 C -0.131 4.131 28 C -0.094 4.094 29 O -0.365 6.365 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.270 0.730 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.141 0.859 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 1.329 -10.908 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.002 4.002 5 N -0.144 5.144 6 C -0.462 4.462 7 H 0.104 0.896 8 C -0.155 4.155 9 N -0.496 5.496 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.271 3.729 15 O -0.472 6.472 16 C 0.029 3.971 17 H 0.105 0.895 18 C -0.215 4.215 19 C -0.016 4.016 20 O -0.312 6.312 21 C 0.195 3.805 22 H 0.081 0.919 23 C -0.079 4.079 24 C -0.096 4.096 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.149 4.149 28 C -0.112 4.112 29 O -0.285 6.285 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.159 0.841 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.894 1.981 -10.778 11.121 hybrid contribution -0.326 -1.200 0.480 1.333 sum -2.220 0.781 -10.298 10.564 Atomic orbital electron populations 1.22647 0.83385 1.01741 0.98893 1.88126 1.17400 1.27707 1.95056 1.23066 0.96527 0.84341 0.98759 1.21377 0.89031 0.99154 0.90625 1.43140 1.56955 1.07341 1.07011 1.19276 1.38768 0.82142 1.06020 0.89589 1.25312 0.93614 0.99829 0.96709 1.69934 1.27876 1.36905 1.14849 0.86174 0.78841 0.83201 0.77852 1.20516 1.20761 1.19177 1.19753 0.81036 0.86591 0.85549 1.90539 1.56188 1.14356 1.86137 1.21801 0.95805 0.90475 0.88983 0.89468 1.22669 0.98910 1.02792 0.97115 1.22695 0.98808 0.88782 0.91308 1.88095 1.43989 1.51320 1.47789 1.21706 0.86609 0.90990 0.81228 0.91891 1.19310 1.00854 0.93783 0.93970 1.21231 0.95823 0.91408 1.01130 1.21190 1.00062 0.99267 0.94053 1.21180 0.99771 0.96745 0.95761 1.21028 1.01267 0.92980 0.99630 1.20858 0.98025 0.99629 0.92667 1.88119 1.84029 1.35807 1.20543 0.90407 0.95121 0.94986 0.94119 0.94127 0.87234 0.91018 0.92031 0.90451 0.88225 0.88397 0.92586 0.84138 0.85878 0.86250 0.86050 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.49 10.44 -35.23 -0.37 -7.85 16 3 C 0.05 1.03 6.24 37.16 0.23 1.27 16 4 C 0.12 2.86 5.32 -4.04 -0.02 2.84 16 5 N -0.43 -10.47 2.47 -114.80 -0.28 -10.75 16 6 C -0.33 -8.17 7.90 -14.93 -0.12 -8.29 16 7 H 0.09 1.98 5.59 -52.49 -0.29 1.69 16 8 C 0.05 1.28 4.93 -17.47 -0.09 1.19 16 9 N -0.86 -22.32 11.59 55.50 0.64 -21.68 16 10 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 14 C 0.48 11.92 6.89 -10.98 -0.08 11.84 16 15 O -0.59 -15.96 16.23 -13.71 -0.22 -16.19 16 16 C 0.09 1.88 2.35 -27.74 -0.07 1.81 16 17 H 0.09 1.82 7.40 -51.93 -0.38 1.44 16 18 C -0.18 -3.14 5.44 -26.46 -0.14 -3.28 16 19 C 0.06 0.89 6.96 37.29 0.26 1.15 16 20 O -0.39 -6.54 10.41 -59.03 -0.61 -7.15 16 21 C 0.29 4.98 3.54 36.01 0.13 5.11 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 23 C -0.08 -1.25 5.56 -104.62 -0.58 -1.84 16 24 C -0.08 -1.25 9.38 -39.58 -0.37 -1.62 16 25 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 26 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 27 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 28 C -0.09 -1.24 9.61 -39.59 -0.38 -1.62 16 29 O -0.37 -7.60 8.26 -66.07 -0.55 -8.14 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.11 2.74 5.70 -51.93 -0.30 2.45 16 36 H 0.07 1.72 7.52 -51.93 -0.39 1.33 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.10 1.75 6.32 -51.93 -0.33 1.42 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 2.53 7.00 -52.49 -0.37 2.16 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -30.80 378.92 -8.71 -39.51 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.69 Total: 7.88 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.31 Total: 4.44 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.36 Total: -32.43 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.75 Total: -39.33 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.80 -8.71 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848215106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.248 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds