Wall clock time and date at job start Tue Mar 31 2020 19:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99558 * 2 1 4 4 C 1.53006 * 109.47070 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46947 * 64.99872 * 4 3 2 6 6 C 1.37100 * 120.00300 * 264.46461 * 5 4 3 7 7 H 1.07999 * 119.99815 * 140.16858 * 6 5 4 8 8 C 1.38954 * 119.99705 * 320.17348 * 6 5 4 9 9 N 1.31411 * 119.99815 * 340.60569 * 8 6 5 10 10 Si 1.86794 * 119.99971 * 160.60939 * 8 6 5 11 11 H 1.48498 * 109.47165 * 89.99323 * 10 8 6 12 12 H 1.48496 * 109.47461 * 209.99604 * 10 8 6 13 13 H 1.48506 * 109.46916 * 329.99681 * 10 8 6 14 14 C 1.34779 * 119.99573 * 84.46368 * 5 4 3 15 15 O 1.21293 * 120.00483 * 5.29239 * 14 5 4 16 16 C 1.50707 * 119.99707 * 185.29009 * 14 5 4 17 17 H 1.09000 * 109.55561 * 316.24657 * 16 14 5 18 18 C 1.53261 * 109.55663 * 76.46040 * 16 14 5 19 19 C 1.53263 * 108.84255 * 174.47090 * 18 16 14 20 20 O 1.43091 * 108.94291 * 305.47240 * 19 18 16 21 21 C 1.42969 * 113.76684 * 57.97178 * 20 19 18 22 22 H 1.08999 * 109.47086 * 61.20708 * 21 20 19 23 23 C 1.50704 * 109.47252 * 181.20179 * 21 20 19 24 24 C 1.38240 * 119.99496 * 119.72480 * 23 21 20 25 25 C 1.38231 * 119.99448 * 180.30842 * 24 23 21 26 26 C 1.38236 * 120.00327 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99951 * 359.97438 * 26 25 24 28 28 C 1.38227 * 119.99933 * 300.00526 * 23 21 20 29 29 O 1.42963 * 109.47275 * 301.20387 * 21 20 19 30 30 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47368 * 299.99707 * 1 2 3 32 32 H 1.08997 * 109.47271 * 59.99739 * 1 2 3 33 33 H 1.08996 * 109.47584 * 60.00348 * 3 2 1 34 34 H 1.08997 * 109.47409 * 299.99540 * 3 2 1 35 35 H 1.08997 * 109.47191 * 305.00511 * 4 3 2 36 36 H 1.08994 * 109.47416 * 185.00103 * 4 3 2 37 37 H 0.97004 * 119.99458 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.57444 * 54.65968 * 18 16 14 39 39 H 1.08999 * 109.68339 * 294.33978 * 18 16 14 40 40 H 1.09001 * 109.55630 * 185.63683 * 19 18 16 41 41 H 1.09000 * 109.64939 * 65.36571 * 19 18 16 42 42 H 1.07996 * 120.00147 * 0.27940 * 24 23 21 43 43 H 1.07999 * 119.99944 * 180.02562 * 25 24 23 44 44 H 1.07999 * 120.00107 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00102 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.00314 * 359.71993 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2062 -0.7859 -1.3049 7 1 3.9052 -1.3520 -2.1740 8 6 4.8272 -1.4263 -0.2394 9 7 5.5264 -0.7300 0.6284 10 14 4.6680 -3.2768 -0.0408 11 1 5.7746 -3.9496 -0.7674 12 1 4.7368 -3.6277 1.4005 13 1 3.3661 -3.7242 -0.5976 14 6 4.1538 1.3216 -2.3535 15 8 4.0434 2.5275 -2.2847 16 6 4.4904 0.6697 -3.6700 17 1 5.2464 -0.0997 -3.5133 18 6 3.2288 0.0356 -4.2659 19 6 3.5570 -0.5002 -5.6638 20 8 4.1159 0.5585 -6.4476 21 6 5.2928 1.1373 -5.8786 22 1 6.0681 0.3757 -5.7947 23 6 5.7809 2.2555 -6.7632 24 6 5.8673 3.5425 -6.2659 25 6 6.3089 4.5693 -7.0792 26 6 6.6645 4.3092 -8.3894 27 6 6.5791 3.0220 -8.8863 28 6 6.1365 1.9953 -8.0733 29 8 4.9900 1.6540 -4.5805 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8514 0.5683 0.8408 36 1 3.9784 2.1766 0.0889 37 1 5.9601 -1.1771 1.3720 38 1 2.4419 0.7864 -4.3379 39 1 2.8943 -0.7840 -3.6299 40 1 2.6456 -0.8637 -6.1385 41 1 4.2770 -1.3147 -5.5844 42 1 5.5894 3.7457 -5.2423 43 1 6.3768 5.5747 -6.6907 44 1 7.0099 5.1114 -9.0247 45 1 6.8573 2.8187 -9.9098 46 1 6.0690 0.9899 -8.4617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848215106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:30 Heat of formation + Delta-G solvation = -148.786211 kcal Electronic energy + Delta-G solvation = -30145.216979 eV Core-core repulsion = 26000.018639 eV Total energy + Delta-G solvation = -4145.198339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58154 -40.39557 -39.50317 -38.52975 -36.87198 -36.43829 -34.28181 -33.55140 -31.97419 -31.74597 -30.90431 -27.85116 -27.26938 -26.64248 -26.38068 -23.87134 -23.43088 -22.74272 -22.01743 -21.04398 -19.31072 -18.57737 -17.98935 -17.76010 -17.22252 -17.13792 -17.03189 -16.76554 -16.40760 -16.26741 -15.98276 -15.75820 -15.58840 -15.38332 -15.09998 -14.63515 -14.40325 -14.25050 -14.10364 -13.69118 -13.63273 -13.35591 -13.03131 -12.91614 -12.75478 -12.71961 -12.56649 -12.54439 -12.19615 -12.08126 -11.96686 -11.86712 -11.77529 -11.34536 -10.96227 -10.82084 -10.55485 -10.23412 -9.83144 -9.77139 -9.46021 -8.28468 -6.04371 0.31040 0.49289 1.42094 1.51481 1.62342 1.83147 2.14989 2.40810 2.51629 2.95672 2.97224 3.05931 3.22219 3.71750 3.77378 3.79864 3.89964 4.07603 4.10665 4.17800 4.21319 4.24225 4.34790 4.38968 4.43787 4.50714 4.56072 4.59598 4.62956 4.63484 4.73245 4.77570 4.78119 4.85438 5.00489 5.01593 5.15542 5.28491 5.46860 5.52549 5.58123 5.62171 5.84743 5.97690 6.07729 6.10814 6.37291 6.41314 7.14009 7.53454 7.95858 8.76462 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.003461 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.981631 B = 8088.946573 C = 8547.573430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.065 3.935 4 C 0.119 3.881 5 N -0.429 5.429 6 C -0.344 4.344 7 H 0.100 0.900 8 C 0.010 3.990 9 N -0.895 5.895 10 Si 0.979 3.021 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.259 1.259 14 C 0.465 3.535 15 O -0.626 6.626 16 C 0.094 3.906 17 H 0.085 0.915 18 C -0.166 4.166 19 C 0.062 3.938 20 O -0.396 6.396 21 C 0.286 3.714 22 H 0.076 0.924 23 C -0.104 4.104 24 C -0.109 4.109 25 C -0.133 4.133 26 C -0.110 4.110 27 C -0.123 4.123 28 C -0.097 4.097 29 O -0.391 6.391 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.271 0.729 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.138 0.862 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -0.307 -13.463 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.005 4.005 5 N -0.147 5.147 6 C -0.471 4.471 7 H 0.118 0.882 8 C -0.193 4.193 9 N -0.532 5.532 10 Si 0.803 3.197 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.182 1.182 14 C 0.254 3.746 15 O -0.514 6.514 16 C 0.034 3.966 17 H 0.103 0.897 18 C -0.205 4.205 19 C -0.014 4.014 20 O -0.317 6.317 21 C 0.191 3.809 22 H 0.093 0.907 23 C -0.104 4.104 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.127 4.127 27 C -0.140 4.140 28 C -0.115 4.115 29 O -0.312 6.312 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.148 0.852 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.156 0.844 44 H 0.174 0.826 45 H 0.177 0.823 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.345 0.328 -13.343 13.551 hybrid contribution -0.183 -0.618 1.264 1.419 sum -2.528 -0.289 -12.078 12.343 Atomic orbital electron populations 1.22898 0.80576 1.03479 1.00206 1.88055 1.20465 1.27372 1.95302 1.22787 0.94200 0.84842 0.99442 1.21332 0.91513 0.97681 0.89976 1.43367 1.56451 1.07723 1.07202 1.19654 1.38741 0.82046 1.06680 0.88237 1.26149 0.92963 1.04011 0.96169 1.70048 1.28861 1.38751 1.15507 0.85158 0.79234 0.77872 0.77464 1.19605 1.21159 1.18250 1.20496 0.80670 0.86392 0.87025 1.90493 1.57989 1.15959 1.86949 1.21661 0.97210 0.90007 0.87745 0.89727 1.22595 0.96625 1.02058 0.99187 1.22903 1.00749 0.88528 0.89217 1.88086 1.43902 1.51919 1.47821 1.21971 0.86976 0.92022 0.79934 0.90697 1.19420 1.02558 0.93224 0.95239 1.21090 0.98522 0.92957 1.00201 1.21409 0.99651 0.99176 0.94851 1.21605 0.98115 0.97999 0.95014 1.21499 0.99277 0.92298 1.00949 1.21106 0.97657 1.01217 0.91514 1.88116 1.84338 1.36578 1.22170 0.88498 0.93068 0.94349 0.91371 0.95314 0.88777 0.92832 0.91966 0.92209 0.87936 0.85218 0.90426 0.87838 0.84446 0.82642 0.82316 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.96 16 2 O -0.39 -15.96 10.44 -148.98 -1.56 -17.52 16 3 C 0.06 2.69 6.24 71.98 0.45 3.14 16 4 C 0.12 5.84 5.32 86.38 0.46 6.30 16 5 N -0.43 -21.95 2.47 -635.51 -1.57 -23.52 16 6 C -0.34 -17.00 7.90 84.04 0.66 -16.34 16 7 H 0.10 4.54 5.59 -2.91 -0.02 4.53 16 8 C 0.01 0.51 4.93 84.93 0.42 0.93 16 9 N -0.89 -47.56 11.59 21.66 0.25 -47.31 16 10 Si 0.98 39.01 29.59 68.60 2.03 41.04 16 11 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 14 C 0.47 24.17 6.89 87.66 0.60 24.77 16 15 O -0.63 -36.35 16.23 15.34 0.25 -36.10 16 16 C 0.09 4.08 2.35 29.94 0.07 4.15 16 17 H 0.09 3.65 7.40 -2.39 -0.02 3.63 16 18 C -0.17 -5.92 5.44 30.77 0.17 -5.76 16 19 C 0.06 1.71 6.96 72.07 0.50 2.21 16 20 O -0.40 -12.89 10.41 -126.22 -1.31 -14.20 16 21 C 0.29 9.95 3.54 71.24 0.25 10.20 16 22 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 23 C -0.10 -3.34 5.56 -19.87 -0.11 -3.45 16 24 C -0.11 -3.68 9.38 22.27 0.21 -3.47 16 25 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 26 C -0.11 -2.19 10.05 22.27 0.22 -1.96 16 27 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 28 C -0.10 -2.38 9.61 22.27 0.21 -2.17 16 29 O -0.39 -17.17 8.26 -119.49 -0.99 -18.16 16 30 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 4.92 5.70 -2.39 -0.01 4.90 16 36 H 0.05 2.75 7.52 -2.39 -0.02 2.73 16 37 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.10 3.54 6.32 -2.39 -0.02 3.53 16 40 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 4.16 7.00 -2.91 -0.02 4.14 16 43 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 46 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -70.63 378.92 3.90 -66.73 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.98 Total: 33.89 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 5.82 Total: 15.15 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.32 Total: -70.83 kcal Atomic # 8 Polarization: -82.38 SS G_CDS: -3.61 Total: -85.98 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -70.63 3.90 -66.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848215106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.058 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds