Wall clock time and date at job start Tue Mar 31 2020 19:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99555 * 2 1 4 4 C 1.53001 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47382 * 65.00184 * 4 3 2 6 6 C 1.37103 * 119.99654 * 275.98713 * 5 4 3 7 7 H 1.07999 * 119.99763 * 36.86156 * 6 5 4 8 8 C 1.38948 * 119.99737 * 216.85997 * 6 5 4 9 9 N 1.31410 * 120.00065 * 5.03404 * 8 6 5 10 10 Si 1.86798 * 119.99869 * 185.03104 * 8 6 5 11 11 H 1.48507 * 109.47151 * 90.00467 * 10 8 6 12 12 H 1.48506 * 109.47246 * 209.99910 * 10 8 6 13 13 H 1.48492 * 109.47254 * 330.00172 * 10 8 6 14 14 C 1.34776 * 120.00378 * 95.98208 * 5 4 3 15 15 O 1.21284 * 120.00182 * 185.13337 * 14 5 4 16 16 C 1.50709 * 119.99630 * 5.14142 * 14 5 4 17 17 H 1.09000 * 109.55474 * 307.99170 * 16 14 5 18 18 C 1.53253 * 109.55940 * 68.21220 * 16 14 5 19 19 C 1.53253 * 108.95384 * 65.35968 * 18 16 14 20 20 O 1.43364 * 108.79537 * 54.46675 * 19 18 16 21 21 C 1.42971 * 113.83730 * 302.10563 * 20 19 18 22 22 H 1.09008 * 109.46986 * 298.79320 * 21 20 19 23 23 C 1.50703 * 109.47385 * 178.80006 * 21 20 19 24 24 C 1.38235 * 119.99537 * 239.72684 * 23 21 20 25 25 C 1.38238 * 119.99604 * 179.78587 * 24 23 21 26 26 C 1.38235 * 119.99895 * 0.43924 * 25 24 23 27 27 C 1.38231 * 120.00019 * 359.80943 * 26 25 24 28 28 C 1.38232 * 120.00261 * 359.97438 * 27 26 25 29 29 O 1.42965 * 109.47236 * 58.79541 * 21 20 19 30 30 H 1.09000 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46847 * 299.99449 * 1 2 3 32 32 H 1.08991 * 109.47275 * 59.99821 * 1 2 3 33 33 H 1.09003 * 109.47232 * 60.00393 * 3 2 1 34 34 H 1.08998 * 109.47415 * 300.00030 * 3 2 1 35 35 H 1.08999 * 109.47238 * 304.99608 * 4 3 2 36 36 H 1.09010 * 109.47133 * 185.00208 * 4 3 2 37 37 H 0.96997 * 120.00074 * 184.64632 * 9 8 6 38 38 H 1.08998 * 109.57172 * 185.23485 * 18 16 14 39 39 H 1.09000 * 109.57536 * 305.48421 * 18 16 14 40 40 H 1.09004 * 109.56267 * 174.42731 * 19 18 16 41 41 H 1.09003 * 109.55808 * 294.74441 * 19 18 16 42 42 H 1.07996 * 120.00152 * 359.97438 * 24 23 21 43 43 H 1.07997 * 120.00020 * 180.27423 * 25 24 23 44 44 H 1.07997 * 119.99664 * 179.83643 * 26 25 24 45 45 H 1.08005 * 119.99889 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.99837 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 3.9796 -0.8008 -1.3770 7 1 3.1962 -1.3869 -0.9198 8 6 4.9916 -1.4304 -2.0913 9 7 5.9973 -0.7286 -2.5634 10 14 4.9224 -3.2746 -2.3805 11 1 4.1971 -3.5502 -3.6468 12 1 6.3032 -3.8132 -2.4738 13 1 4.2121 -3.9265 -1.2512 14 6 4.3768 1.3361 -2.2824 15 8 4.6523 0.8288 -3.3490 16 6 4.4830 2.8294 -2.1083 17 1 3.5479 3.2170 -1.7041 18 6 5.6312 3.1534 -1.1464 19 6 6.9552 2.7277 -1.7904 20 8 7.0632 3.3487 -3.0780 21 6 5.9854 3.0345 -3.9633 22 1 5.9644 1.9595 -4.1429 23 6 6.1817 3.7583 -5.2705 24 6 5.2261 4.6525 -5.7156 25 6 5.4082 5.3197 -6.9125 26 6 6.5415 5.0859 -7.6687 27 6 7.4946 4.1878 -7.2260 28 6 7.3147 3.5239 -6.0270 29 8 4.7492 3.4434 -3.3730 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8515 0.5683 0.8409 36 1 3.9785 2.1767 0.0890 37 1 6.6682 -1.1554 -3.1188 38 1 5.6496 4.2249 -0.9476 39 1 5.4887 2.6110 -0.2118 40 1 7.7860 3.0428 -1.1590 41 1 6.9731 1.6440 -1.9057 42 1 4.3388 4.8321 -5.1268 43 1 4.6638 6.0217 -7.2581 44 1 6.6825 5.6052 -8.6050 45 1 8.3799 4.0048 -7.8171 46 1 8.0591 2.8220 -5.6814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848215116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:44 Heat of formation + Delta-G solvation = -104.216475 kcal Electronic energy + Delta-G solvation = -30981.060081 eV Core-core repulsion = 26837.794430 eV Total energy + Delta-G solvation = -4143.265651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.12096 -38.76055 -37.79242 -36.89483 -35.02428 -34.03442 -32.84229 -31.74316 -30.61826 -30.30543 -28.84640 -26.39919 -25.85495 -25.08926 -24.19988 -22.49348 -22.21828 -21.25112 -20.77330 -19.24190 -17.17203 -16.65573 -16.51262 -16.10253 -15.80113 -15.59907 -15.26656 -15.11953 -14.92701 -14.76134 -14.29046 -14.10387 -14.03057 -13.62320 -13.29068 -13.07099 -12.98547 -12.68901 -12.44465 -12.29182 -12.26676 -11.75923 -11.47185 -11.28618 -11.04978 -10.95853 -10.91847 -10.77492 -10.69794 -10.57011 -10.41853 -10.30293 -10.03313 -9.67537 -9.29684 -9.23412 -8.82995 -8.64280 -8.52681 -7.53365 -7.02546 -5.89430 -3.79553 1.57491 1.68438 3.35422 3.41602 3.41975 3.91956 4.05705 4.15371 4.29798 4.41454 4.45696 4.88939 5.16177 5.21836 5.24634 5.30501 5.32844 5.37768 5.45373 5.47737 5.53737 5.62229 5.70585 5.72339 5.81526 5.85275 5.85394 5.86612 5.93639 6.02599 6.14896 6.18033 6.22985 6.29518 6.30750 6.45443 6.49163 6.67882 6.71538 6.74084 6.91765 7.25077 7.47332 7.60536 7.76009 7.79937 8.30808 9.09071 9.21658 9.71247 10.33713 11.04273 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.004265 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.447979 B = 6564.090796 C = 7510.316360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.048 3.952 4 C 0.095 3.905 5 N -0.445 5.445 6 C -0.309 4.309 7 H 0.091 0.909 8 C 0.038 3.962 9 N -0.818 5.818 10 Si 0.915 3.085 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.425 3.575 15 O -0.495 6.495 16 C 0.075 3.925 17 H 0.103 0.897 18 C -0.179 4.179 19 C 0.054 3.946 20 O -0.399 6.399 21 C 0.270 3.730 22 H 0.126 0.874 23 C -0.064 4.064 24 C -0.090 4.090 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.093 4.093 29 O -0.377 6.377 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 9.902 0.915 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.031 4.031 4 C -0.030 4.030 5 N -0.168 5.168 6 C -0.436 4.436 7 H 0.109 0.891 8 C -0.170 4.170 9 N -0.456 5.456 10 Si 0.743 3.257 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.200 1.200 14 C 0.212 3.788 15 O -0.370 6.370 16 C 0.014 3.986 17 H 0.121 0.879 18 C -0.217 4.217 19 C -0.023 4.023 20 O -0.320 6.320 21 C 0.177 3.823 22 H 0.142 0.858 23 C -0.065 4.065 24 C -0.108 4.108 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.146 4.146 28 C -0.112 4.112 29 O -0.296 6.296 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.595 9.704 0.142 9.835 hybrid contribution -0.404 -0.834 0.207 0.949 sum -1.998 8.870 0.349 9.099 Atomic orbital electron populations 1.22669 0.82752 1.02140 0.99003 1.88103 1.18042 1.27237 1.95063 1.23123 0.95943 0.85099 0.98886 1.21791 0.91253 0.98747 0.91179 1.43294 1.59499 1.05797 1.08238 1.19353 1.07834 0.80137 1.36317 0.89127 1.25186 0.94748 0.98550 0.98513 1.69978 1.10316 1.35461 1.29820 0.86124 0.76887 0.84192 0.78479 1.20981 1.21519 1.19961 1.20214 0.86503 0.86499 0.85589 1.90431 1.48669 1.72529 1.25413 1.22176 0.97964 0.94389 0.84076 0.87923 1.22802 0.97056 1.01937 0.99940 1.22763 0.95981 1.00137 0.83386 1.87999 1.45798 1.73120 1.25068 1.22536 0.75225 0.99776 0.84812 0.85770 1.19534 0.95281 0.96953 0.94684 1.21047 0.99316 0.94533 0.95895 1.21103 0.97930 1.00471 0.95299 1.21097 0.94714 0.98765 0.99662 1.21039 0.99442 0.97672 0.96431 1.20920 0.96796 0.99303 0.94134 1.87922 1.39626 1.67401 1.34700 0.90175 0.95014 0.94639 0.93930 0.93856 0.90486 0.90303 0.93163 0.91059 0.89359 0.89703 0.89057 0.85139 0.86275 0.86475 0.86163 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.70 9.23 -35.23 -0.33 -7.03 16 3 C 0.05 0.77 6.28 37.16 0.23 1.01 16 4 C 0.10 1.72 5.22 -4.04 -0.02 1.70 16 5 N -0.45 -10.44 2.59 -114.81 -0.30 -10.74 16 6 C -0.31 -8.16 8.98 -14.93 -0.13 -8.29 16 7 H 0.09 2.41 6.83 -52.49 -0.36 2.06 16 8 C 0.04 1.04 4.84 -17.47 -0.08 0.95 16 9 N -0.82 -22.81 9.75 55.50 0.54 -22.27 16 10 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.43 10.26 5.12 -10.98 -0.06 10.21 16 15 O -0.50 -13.96 10.55 -14.12 -0.15 -14.11 16 16 C 0.08 1.50 2.89 -27.75 -0.08 1.42 16 17 H 0.10 1.78 7.59 -51.93 -0.39 1.39 16 18 C -0.18 -3.12 5.37 -26.47 -0.14 -3.26 16 19 C 0.05 1.03 6.74 37.29 0.25 1.29 16 20 O -0.40 -8.30 10.42 -59.03 -0.61 -8.92 16 21 C 0.27 5.80 3.12 36.01 0.11 5.91 16 22 H 0.13 3.15 5.35 -51.92 -0.28 2.88 16 23 C -0.06 -1.22 5.56 -104.62 -0.58 -1.81 16 24 C -0.09 -1.54 9.38 -39.58 -0.37 -1.91 16 25 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 27 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 28 C -0.09 -1.59 9.61 -39.59 -0.38 -1.97 16 29 O -0.38 -7.98 8.70 -66.19 -0.58 -8.56 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 36 H 0.08 1.21 4.21 -51.92 -0.22 0.99 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.42 5.67 -51.93 -0.29 1.12 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.09 2.09 7.11 -51.93 -0.37 1.72 16 42 H 0.13 2.22 7.00 -52.49 -0.37 1.85 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 46 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -32.57 365.78 -8.76 -41.32 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.49 Total: 7.83 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.34 Total: 0.29 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.24 Total: -33.01 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.66 Total: -38.61 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.57 -8.76 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848215116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.892 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds